ID: uc007rrc.5
GENE: Rad17(5)
chr13:101397751-101398000-


(8)
AGO2.ip
(5)
B-CELL
(11)
BRAIN
(1)
CELL-LINE
(1)
DCR.mut
(7)
EMBRYO
(6)
ESC
(1)
FIBROBLAST
(2)
LIVER
(1)
LYMPH
(7)
OTHER
(1)
OTHER.mut
(1)
PIWI.ip
(2)
SPLEEN
(5)
TESTES
(3)
TOTAL-RNA

Sense strand
AAAAGACATAATCCAAAAATCAGAATTCTGAATTTTGTCCTTAGTAGTAGTGTAGTCAAGCTCACTTGTTTTGATGTTTTGGTTTTTAATTTTTAATAGCTTCCTTATTATTTTGACATTAATATAACTAAAGTATTGAAAATGAGCATATGAAAGCGCTGTGATTATAAAGATTAGTAATCGCAGATATTCTTTCATAGGAGCGCCTTTAACAGAGTTAGACTCACCTCGCCTGCCTGCTCACTTGTCA
....................................................................................................................................................((((((((..((((((((((........)))))))))).....))))))))...................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR073955(GSM629281)
total RNA. (blood)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR060845(GSM561991)
total RNA. (brain)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR037911(GSM510448)
newborn_rep4. (total RNA)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
...................................................................................................................................................ATATGAAAGCGCTGTGATTAT..................................................................................21117.0017.004.00-2.001.00---3.001.001.00---1.00------1.00-------1.00----------1.00----1.00------
....................................................................................................................................................TATGAAAGCGCTGTGATTA...................................................................................1918.008.00--1.004.00----3.00------------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATT....................................................................................1917.007.00-2.00---1.00----1.00---------------------1.00-1.00-------------1.00--
..................................................................................................................................................CATATGAAAGCGCTGTGATTA...................................................................................2115.005.00-------1.00--1.002.00------------------------------1.00--------
..................................................................................................................................................CATATGAAAGCGCTGTGATTAT..................................................................................2214.004.00----4.00----------------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTA...................................................................................2014.004.00---------1.00--1.00------1.00----------------1.00--------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGA.................................................224.000.00------------------2.00------------------------1.00-1.00-----
..................................................................................................................................................................................AATCGCAGATATTCTTTCATAGT.................................................233.000.00------3.00--------------------------------------------
.................................................................................................................................................................................TAATCGCAGATATTCTTTCATAG..................................................2313.003.00--------------3.00------------------------------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGT.................................................222.000.00----------------------------------------------1.00--1.00-
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGTT................................................232.000.00--1.00-------1.00----------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATA....................................................................................192.000.00-1.00------------------------1.00------------------------
..................................................................................................................................................................................AATCGCAGATATTCTTTCATAGA.................................................232.000.00-----------------2.00---------------------------------
..................................................................................................................................................CATATGAAAGCGCTGTGATT....................................................................................2012.002.00-----1.00-------------------------------1.00-------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGTTT...............................................242.000.002.00--------------------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATAT...................................................................................202.000.00---------1.00-------------------1.00---------------------
....................................................................................................................................................TATGAAAGCGCTGTGATTAT..................................................................................2012.002.00--1.00--------------------------------1.00---------------
.............................................................................................................................................................................TTAGTAATCGCAGATCAGC..........................................................191.000.00------------1.00--------------------------------------
....................................................................TTTTGATGTTTTGGTCG.....................................................................................................................................................................171.000.00-------------1.00-------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATC....................................................................................191.000.00-1.00-------------------------------------------------
...........................................................................................................................ATAACTAAAGTATTGAAAATGAGCAT.....................................................................................................2611.001.00------------1.00--------------------------------------
........................................................................................................................................TGAAAATGAGCATATGAAAGCGCTGTGATTATAAAGATTAGTAATCGCAGATATTCTTTCATAG..................................................6411.001.00----------------------------------------1.00----------
.........................................................................................................................................................................................................................TTAGACTCACCTCGCCTGCCTGC..........2311.001.00-------------------1.00-------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATATTCTTTC......................................................2311.001.00---------------1.00-----------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTT...................................................................................2011.007.00-----1.00---------------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATG....................................................................................191.000.00-1.00-------------------------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATATTCTTT.......................................................2211.001.00--------------------------------------1.00------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGATA...............................................241.000.00-----1.00---------------------------------------------
...............................................................................................................................................................................................................................TCACCTCGCCTGCCTGCTCACTTG...2411.001.00----------------1.00----------------------------------
...............................................................................................................................................................................................................................TCACCTCGCCTGCCTGCTCACTTGTC.2611.001.00----------------1.00----------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATCA............................................................171.000.00-------------------------1.00-------------------------
..............................................................................................................................................................................TAGTAATCGCAGATATTCTTTCATAG..................................................2611.001.00-----------------------------------------------1.00---
...................................................................................................................................................ATATGAAAGCGCTGTGAGT....................................................................................191.000.00-1.00-------------------------------------------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGAT................................................231.000.00---1.00-----------------------------------------------
.......................................................................................................................................................................................................................AGTTAGACTCACCTCGCC.................1811.001.00-----------------------------------------1.00---------
.................................................................................................................................................................................TAATCGCAGATATTCTT........................................................1711.001.001.00--------------------------------------------------
.....................................................................................................................................................ATGAAAGCGCTGTGATTATAAAGA.............................................................................2411.001.00------------------------------1.00--------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTATA.................................................................................2211.001.00---------------------------------1.00-----------------
..................................................................................................................................................................................AATCGCAGATATTCTTTCATAGTT................................................241.000.00------1.00--------------------------------------------
.................................................................................................................................AAAGTATTGAAAATGAGCATA....................................................................................................2111.001.00--------------------------------------------------1.00
.....................................................................................................................................................ATGAAAGCGCTGTGATTAT..................................................................................1911.001.00---------------1.00-----------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTAA..................................................................................2111.004.00---------------------1.00-----------------------------
.................................................................................................................................................................................TAATCGCAGATATTCTTTCATAGT.................................................2411.003.00-------------1.00-------------------------------------
..................................................................................................................................................CATATGAAAGCGCTGTGATTAA..................................................................................2211.005.00--------------------1.00------------------------------
...............................................................................................................................................................................AGTAATCGCAGAT..............................................................13100.200.20---------------------0.20-----------------------------

Antisense strand
AAAAGACATAATCCAAAAATCAGAATTCTGAATTTTGTCCTTAGTAGTAGTGTAGTCAAGCTCACTTGTTTTGATGTTTTGGTTTTTAATTTTTAATAGCTTCCTTATTATTTTGACATTAATATAACTAAAGTATTGAAAATGAGCATATGAAAGCGCTGTGATTATAAAGATTAGTAATCGCAGATATTCTTTCATAGGAGCGCCTTTAACAGAGTTAGACTCACCTCGCCTGCCTGCTCACTTGTCA
....................................................................................................................................................((((((((..((((((((((........)))))))))).....))))))))...................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR073955(GSM629281)
total RNA. (blood)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR060845(GSM561991)
total RNA. (brain)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR037911(GSM510448)
newborn_rep4. (total RNA)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
.............................................................TCACTTGTTTTGATGTTAAGA........................................................................................................................................................................ 211.000.00---------------------------1.00-----------------------
......................................................................................................................................................................................................................................GCCTGCCTGCTCACTTCTC. 191.000.00-------------------------------1.00-------------------
..............................................................................................AATAGCTTCCTTATTATATA........................................................................................................................................ 201.000.00--1.00------------------------------------------------
......................................................................................................................................................................................................................................GCCTGCCTGCTCACTTGCTCG 211.000.00-----------1.00---------------------------------------
......................................................................................................................................................................................................................................GCCTGCCTGCTCACTCTC.. 181.000.00-----------------------1.00---------------------------
................................................................................................TAGCTTCCTTATTATTTA........................................................................................................................................ 181.000.00----------------------1.00----------------------------
.....................................................AGTCAAGCTCACTTGTGT................................................................................................................................................................................... 181.000.00------------------------1.00--------------------------