ID: uc007ofw.29
GENE: Ltbp2(29)
chr12:86170318-86170567-


(4)
AGO2.ip 		(1)
B-CELL 		(10)
BRAIN 		(4)
CELL-LINE 		(1)
DGCR8.mut 		(2)
EMBRYO 		(2)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(1)
LIVER 		(1)
LUNG 		(6)
OTHER 		(2)
SPLEEN 		(6)
TESTES

Sense strand
GGGGTTACCGCTTCTTCTTGTCCTGGGGTTGGAGGTGGGGCAGTGCTCTGGTTACAATAACAGGCAAAGAAATGGAAGGGGGCTTTTGGTGAGGCGCCCAGTCTGGAGCCTGCCTGCCTGACGGTGGTGGGCACTCTTCACAGGGCAGAAGTGAGGTTAGGAGCCTGTTTCTCGGCTCTGATCCCAACCCTTCTGCCCAGCCTCTGTGAACCCCTCGCTGGTGAAGGTGCAAATTCATCACCCGCCTGAG
..............................................................................................................................................(((((((((((.((...((((((........))))))...))))...)))))))))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT1()
Testes Data. (testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR553586(SRX182792)
source: Testis. (testes)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCAGT.................................................25123.0012.007.007.002.00---1.002.00------1.00------2.00-------1.00-----------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCAG..................................................24112.0012.002.002.00----1.00-1.003.00---------------1.001.00----------1.00---
................................................................................................................................................................................TCTGATCCCAACCCTTCTGC......................................................20111.0011.005.001.00----1.00-1.00-----------------------1.00-1.00-1.00----
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCAGA.................................................25110.0012.001.005.00-3.00---1.00---------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCC....................................................2217.007.005.00-----1.00-------------------------------1.00--
............................................................................................................................................CAGGGCAGAAGTGAGGTTAGGA........................................................................................2217.007.00--1.00--1.00---------3.00--1.00---------1.00------------
.............................................................................................................................................AGGGCAGAAGTGAGGTTAGGAGC......................................................................................2316.006.00--1.004.00----------------1.00--------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCC.....................................................2115.005.002.00----------3.00-----------------------------
............................................................................................................................................CAGGGCAGAAGTGAGGTTAGGAG.......................................................................................2315.005.00--2.00--1.00----1.00---------1.00--------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCA...................................................2314.004.002.00------1.001.00--------------------------------
.............................................................................................................................................AGGGCAGAAGTGAGGTTAGGAGT......................................................................................2314.003.00--2.00--1.00------------1.00----------------------
.............................................................................................................................................AGGGCAGAAGTGAGGTTAGGAG.......................................................................................2213.003.00-----1.00-------1.001.00--------------------------
............................................................................................................................................CAGGGCAGAAGTGAGGTTAGGAGT......................................................................................2412.005.00--1.00---------------------1.00----------------
.................................................................................................................................................................................CTGATCCCAACCCTTCTGCCCAGA.................................................242.000.00---1.00---------1.00---------------------------
..................................................................................................................................................................................TGATCCCAACCCTTCTGCCCAGT.................................................2312.001.001.00----------------------------------1.00-----
................................................................................................................................................................................TCTGATCCCAACCCTTCTG.......................................................1911.001.001.00----------------------------------------
............................................................................................................................................CAGGGCAGAAGTGAGGTTAGG.........................................................................................2111.001.00----------1.00------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCCGT.................................................2511.007.00--------------1.00--------------------------
......................CTGGGGTTGGAGGTGCCC..................................................................................................................................................................................................................181.000.00-------------------------------1.00---------
..................................................................................................................................................................................TGATCCCAACCCTTCTGCCCAG..................................................2211.001.00-1.00---------------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCAA....................................................2211.0011.00------1.00----------------------------------
.......................TGGGGTTGGAGGTGGGAT.................................................................................................................................................................................................................181.000.00----------------1.00------------------------
...............................................................................................................................................................................CTCTGATCCCAACCCTTCTGCCCAGA.................................................261.000.00-----------------1.00-----------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCATT.................................................2511.004.001.00----------------------------------------
.................................................................................................................................................CAGAAGTGAGGTTAGGAGC......................................................................................1911.001.00---1.00-------------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCA....................................................2211.005.001.00----------------------------------------
..............................................................................................................................................GGGCAGAAGTGAGGTTAGGAGC......................................................................................2211.001.00---------------------------------------1.00-
............................................................................................................................................CAGGGCAGAAGTGAGGTTAG..........................................................................................2011.001.00----------1.00------------------------------
.................................................................................................................................................................................CTGATCCCAACCCTTCTGCCCAGT.................................................241.000.00--------1.00--------------------------------
........................................................................TGGAAGGGGGCTTTTGTTC...............................................................................................................................................................191.000.00----1.00------------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCAGTT................................................2611.0012.00-1.00---------------------------------------
...............................................................................................................................................................................CTCTGATCCCAACCCTTCTGCCC....................................................2311.001.00-----------------1.00-----------------------
............................................................................................................................................................TTAGGAGCCTGTTTCTATGT..........................................................................201.000.00----1.00------------------------------------
.............................................................................................................................................AGGGCAGAAGTGAGGTTAGGA........................................................................................2111.001.00--1.00--------------------------------------
...........................................................................................................................................ACAGGGCAGAAGTGAGGTTAGGAG.......................................................................................2411.001.00-----1.00-----------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGAAA....................................................2211.001.001.00----------------------------------------
................................................................................................................................................................................TCTGATCCCAACCCTTCTGCCCAAA.................................................2511.004.00-1.00---------------------------------------

Antisense strand
GGGGTTACCGCTTCTTCTTGTCCTGGGGTTGGAGGTGGGGCAGTGCTCTGGTTACAATAACAGGCAAAGAAATGGAAGGGGGCTTTTGGTGAGGCGCCCAGTCTGGAGCCTGCCTGCCTGACGGTGGTGGGCACTCTTCACAGGGCAGAAGTGAGGTTAGGAGCCTGTTTCTCGGCTCTGATCCCAACCCTTCTGCCCAGCCTCTGTGAACCCCTCGCTGGTGAAGGTGCAAATTCATCACCCGCCTGAG
..............................................................................................................................................(((((((((((.((...((((((........))))))...))))...)))))))))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT1()
Testes Data. (testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR553586(SRX182792)
source: Testis. (testes)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
.....................................................................................................................................CTCTTCACAGGGCAGGTG................................................................................................... 183.000.00------------3.00----------------------------
..............................................................................................................................................................................................TTCTGCCCAGCCTCTTTT.......................................... 182.000.00-----------------------1.00----------------1.00
..........CTTCTTCTTGTCCTGGTTA............................................................................................................................................................................................................................. 191.000.00-------------1.00---------------------------
...................................................................................................................................................................................................CCCAGCCTCTGTGAATTAT.................................... 191.000.00----------------------1.00------------------
...................................................................................................................GCCTGACGGTGGTGGGCACTC.................................................................................................................. 2111.001.00------------------------------1.00----------
.................................GGTGGGGCAGTGCTCTGGTTACAATA............................................................................................................................................................................................... 2611.001.00---------------------------------1.00-------
..............................................................................................CGCCCAGTCTGGAGCCTGT......................................................................................................................................... 191.000.00----1.00------------------------------------
.........GCTTCTTCTTGTCCTTC................................................................................................................................................................................................................................ 171.000.00-------------------1.00---------------------
......ACCGCTTCTTCTTGTC.................................................................................................................................................................................................................................... 161.000.00----1.00------------------------------------
...GTTACCGCTTCTTCTTT...................................................................................................................................................................................................................................... 171.000.00---------------------------1.00-------------
...........................................................................................................................................................................................CCCTTCTGCCCAGCCAGTG............................................ 191.000.00-------------------1.00---------------------
......................................................................................................................................................................................................AGCCTCTGTGAACCCCTG.................................. 181.000.00----1.00------------------------------------
...................................................................................................................................................................................................CCCAGCCTCTGTGAAGTG..................................... 181.000.00----------------1.00------------------------