ID: uc007mtj.0
GENE: Arhgdia(5)
chr11:120440695-120440879-


(1)
AGO.mut 		(2)
AGO1.ip 		(4)
AGO2.ip 		(2)
AGO3.ip 		(6)
B-CELL 		(7)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(12)
ESC 		(3)
FIBROBLAST 		(1)
KIDNEY 		(7)
LIVER 		(1)
LUNG 		(3)
LYMPH 		(7)
OTHER 		(10)
OTHER.mut 		(2)
OVARY 		(7)
PIWI.ip 		(2)
PIWI.mut 		(6)
SKIN 		(5)
SPLEEN 		(32)
TESTES 		(2)
THYMUS 		(2)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CGTGTCCGGCATGAAGTACATCCAACACACATACAGGAAAGGGGTCAAAAGTGAGTGGGCGGGCCATAGAGTGGGGAGCCATTGGGCCTGGGAGGGGCGTGCAGCACCAGTAATCCTGCCTCTCCTGTCCCTCAGTTGACAAGACTGACTACATGGTCGGGAGCTATGGGCCGAGGGCCGAGGAG
...........................................................................(((.....((((..(((((((((((((.......)))....)))))))))))))))))....................................................
...........................................................................76.........................................................135................................................
SizePerfect hitTotal NormPerfect NormmjTestesWT4()
Testes Data. (testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjTestesWT3()
Testes Data. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjLiverWT1()
Liver Data. (liver)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR038741(GSM527276)
small RNA-Seq. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR037900(GSM510436)
testes_rep1. (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR206942(GSM723283)
other. (brain)		GSM475281(GSM475281)
total RNA. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
................................................................................ATTGGGCCTGGGAGGGGCGTGC...................................................................................22131.0031.00-12.001.00-----1.00---------2.00--1.001.001.00--------------1.00---1.00----------1.00--2.00--1.00--1.00-------------1.00-----------1.00-1.00----1.00-----1.00---------
................................ACAGGAAAGGGGTCAAAATT.....................................................................................................................................20219.001.50--4.00---6.50----1.50-------0.50-1.001.502.001.500.50-------------------------------------------------------------------------------------
.................................................................................................................................................TGACTACATGGTCGGGAGCTATGGGC..............26113.0013.00---------------1.00----------3.00---2.00-1.00---1.00------2.001.00---1.00--------------------1.00-----------------------------------------
............GAAGTACATCCAACACACAT.........................................................................................................................................................20111.0011.00--5.00--------2.00-------1.00-----3.00-------------------------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGC...................................................................................21110.0010.00-4.001.00--1.00----------------1.00--------1.00-----1.00-------------------------------------------1.00-----------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGCA..................................................................................2319.009.002.001.00--------------------------1.001.00---------------1.00-----1.00--1.00---------1.00----------------------------------------------
...................................................................................................................CTGCCTCTCCTGTCCCTCAGT.................................................2119.009.00---6.00------1.00--------------------------------------------1.00--1.00----------------------------------------------------
...........................................................................................................................................................GTCGGGAGCTATGGGCCGAGGGCCGAG...2717.007.00---------7.00-----------------------------------------------------------------------------------------------------
..................................................................................................................CCTGCCTCTCCTGTCCCTCAGT.................................................2216.006.00---1.00-----------------1.00------------2.00---------------------------------1.00------------------------1.00-----------------
...................................................................................................................CTGCCTCTCCTGTCCCTCAGA.................................................2115.001.00---1.00------3.00---------------------------------------------------------------------------------------1.00------------
................................................................................ATTGGGCCTGGGAGGGGCGTG....................................................................................2115.005.00--------1.00----1.00------1.00------1.00-------------------------------------------1.00---------------------------------------
..............................................................................................................................................................GGGAGCTATGGGCCGAGGGCCGAG...2415.005.00----------------5.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................TACATGGTCGGGAGCTGAC.................194.000.004.00--------------------------------------------------------------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGCAA.................................................................................2414.009.00---------------1.00-----1.00-----------1.00-------------------------------1.00---------------------------------------------
....................TCCAACACACATACAGGAAAGGGGTC...........................................................................................................................................2613.003.00---------------1.00-------------------1.00-----1.00---------------------------------------------------------------------
...........TGAAGTACATCCAACACACATACAGGAAA.................................................................................................................................................2913.003.00---------------1.00----------------1.00----------------------------------------------------------1.00-------------------
....................................................................................................................TGCCTCTCCTGTCCCTCAGA.................................................203.000.00---------------------------------2.00-------------------------1.00---------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGT...................................................................................213.000.00-----3.00---------------------------------------------------------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGCT..................................................................................2313.0031.00-2.00----------------------------------------------------1.00--------------------------------------------------------
.......................AACACACATACAGGAAAGGGGTCAAAATT.....................................................................................................................................292.000.00------------------------------1.00---------------------------------------------------1.00----------------------------
..TGTCCGGCATGAAGTACATCCT.................................................................................................................................................................222.000.00-------------2.00-------------------------------------------------------------------------------------------------
..................................................................................................................CCTGCCTCTCCTGTCCCTCAGA.................................................222.000.00----------1.00--------------------------------------------1.00-------------------------------------------------------
...................................................................................................................................................ACTACATGGTCGGGAGCT....................1822.002.00--------------------0.50---0.50---0.50---------0.50------------------------------------------------------------------------
...............................TACAGGAAAGGGGTCAAAA.......................................................................................................................................1912.002.00-------------------1.00---1.00---------------------------------------------------------------------------------------
........................................................................................................................................TGACAAGACTGACTACATGGTCGGGAGC.....................2812.002.00---------------1.00-----------------------------------------------1.00-----------------------------------------------
..................................................................................................................................................GACTACATGGTCGGGAGC.....................1822.002.00-------------------------0.50---1.50---------------------------------------------------------------------------------
......................................................................................................................................................ACATGGTCGGGAGCTATGGGCCGAGGGC.......2812.002.00-------------------------------1.00-----------------------------1.00-------------------------------------------------
...............................TACAGGAAAGGGGTCAA.........................................................................................................................................1712.002.00----------------------------------------------2.00----------------------------------------------------------------
..................................................................................................................................................GACTACATGGTCGGGAGCT....................1922.002.00-----------1.00----------0.50-0.50--------------------------------------------------------------------------------------
........................................................................................................................................................ATGGTCGGGAGCTATGGG...............1812.002.00-----2.00---------------------------------------------------------------------------------------------------------
................................ACAGGAAAGGGGTCAAAA.......................................................................................................................................1821.501.50--1.00--------0.50---------------------------------------------------------------------------------------------------
..................................................................................................................................................GACTACATGGTCGGGAGCTAT..................2121.501.50-----------0.50--------0.50---0.50--------------------------------------------------------------------------------------
........................................................................................................................................................ATGGTCGGGAGCTATGGGCCGAG..........2311.001.00--------------------------------------------------------------------------------1.00------------------------------
.....................................................................................................................................................TACATGGTCGGGAGCTATGGGCT.............231.000.00---------------------------------------------------------1.00-----------------------------------------------------
......................................................................................................................................................ACATGGTCGGGAGCTATGGGC..............2111.001.00---------------------------------------------------------------------------1.00-----------------------------------
..................................................GTGAGTGGGCGGGCCATAGAGTGGGGAGC..........................................................................................................2911.001.001.00--------------------------------------------------------------------------------------------------------------
..................................................................................TGGGCCTGGGAGGGGCGTGTT..................................................................................2111.001.00------------------------------------------------------------------------------1.00--------------------------------
.............................................................................................................................................................CGGGAGCTATGGGCCGAGGGCCGA....2411.001.00-----------------------------------------------1.00---------------------------------------------------------------
............GAAGTACATCCAACACACA..........................................................................................................................................................1911.001.00--1.00------------------------------------------------------------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGGGC...................................................................................221.000.00-----------------------------------------------------------------------------------1.00---------------------------
..................................................................................................................................................GACTACATGGTCGGGAGCTATGGGC..............2511.001.00------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................TGACTACATGGTCGGGAGCTATGGGG..............261.000.00----------------------------------------------------1.00----------------------------------------------------------
..............................................................................................................................................................GGGAGCTATGGGCCGAGGGCC......2111.001.00------------------1.00--------------------------------------------------------------------------------------------
..................................................................................................................CCTGCCTCTCCTGTCCCTCAGC.................................................221.000.00---1.00-----------------------------------------------------------------------------------------------------------
..................................................................................TGGGCCTGGGAGGGGCGTGCTAA................................................................................2311.001.00------1.00--------------------------------------------------------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGA...................................................................................2211.005.00-----------------------------------------------------------------------------1.00---------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGAA..................................................................................2311.005.00---------------------------1.00-----------------------------------------------------------------------------------
......CGGCATGAAGTACATCCAACACACATACA......................................................................................................................................................2911.001.00------------------------------------------------1.00--------------------------------------------------------------
......................................................................................................................................................ACATGGTCGGGAGCTAT..................1721.001.00-----------0.50------------------------------------------------0.50--------------------------------------------------
...................................................................................................................CTGCCTCTCCTGTCCCTCAG..................................................2011.001.00---1.00-----------------------------------------------------------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGTT..................................................................................2311.005.00--------------------------------------------------1.00------------------------------------------------------------
...................................................................................GGGCCTGGGAGGGGCGTGCAAAT...............................................................................231.000.00----------------------------------------1.00----------------------------------------------------------------------
.GTGTCCGGCATGAAGTACATA...................................................................................................................................................................211.000.00------------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................TTGACAAGACTGACTACATGGTCGGGA.......................2711.001.00------------------------------------------------------------------1.00--------------------------------------------
...........TGAAGTACATCCAACACACATACAGG....................................................................................................................................................2611.001.00------------------------------------------------------------------------1.00--------------------------------------
...............................TACAGGAAAGGGGTCAAAATTGA...................................................................................................................................2311.002.00--------1.00------------------------------------------------------------------------------------------------------
..................................................................................TGGGCCTGGGAGGGGCGTG....................................................................................1911.001.00---------------------------------------------------------------------------------------------------1.00-----------
................................................................................ATTGGGCCTGGGAGGGGCGTGATTT................................................................................2511.005.00---------------------------------------------1.00-----------------------------------------------------------------
....................................................................................................................TGCCTCTCCTGTCCCTCCGT.................................................201.000.00----------------------------------1.00----------------------------------------------------------------------------
........................................................................................................................................................ATGGTCGGGAGCTATGGGCC.............2011.001.00-----1.00---------------------------------------------------------------------------------------------------------
.GTGTCCGGCATGAAGTACATC...................................................................................................................................................................2111.001.00------------1.00--------------------------------------------------------------------------------------------------
...............................................................................CATTGGGCCTGGGAGGGGCGTG....................................................................................2211.001.00--------------------------------------------------1.00------------------------------------------------------------
................................................................................................................ATCCTGCCTCTCCTGTCCCT.....................................................2011.001.00--------------------------------------------------------------------------------------1.00------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGCATA................................................................................2511.009.00-------------------------------------------------------------------------------------1.00-------------------------
.........................................................................................................................................................................GCCGAGGGCCGAGGACA171.000.00-----------------------------1.00---------------------------------------------------------------------------------
.......................................................................TGGGGAGCCATTGGGCCTGGGAGGGG........................................................................................2611.001.00----------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................TGCCTCTCCTGTCCCTCAGTAT...............................................221.000.00-1.00-------------------------------------------------------------------------------------------------------------
.......................AACACACATACAGGAAAGGGGTCAAA........................................................................................................................................2611.001.00-------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................CAAGACTGACTACATGGTCGGGAGCT....................2621.001.00---------------------------------------0.50----------------------0.50------------------------------------------------
......CGGCATGAAGTACATCCA.................................................................................................................................................................1811.001.00-----------------------------------------------1.00---------------------------------------------------------------
................TACATCCAACACACATACAGG....................................................................................................................................................2111.001.00-------------------------------------------------1.00-------------------------------------------------------------
.......................................................................................................................................TTGACAAGACTGACTACATGT.............................211.000.00---------------------------------------------------------------------------------------1.00-----------------------
.......................................................................TGGGGAGCCATTGGGCCTGGGAGGGGCGTG....................................................................................3011.001.00------------------------------------------------------------------------------------1.00--------------------------
...........................CACATACAGGAAAGGGGTCAAAAT......................................................................................................................................241.000.00------------------------------------------1.00--------------------------------------------------------------------
..............AGTACATCCAACACACATACAGGA...................................................................................................................................................2411.001.00--1.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................GAGCTATGGGCCGAGGGCCGAGGAG2511.001.00--------1.00------------------------------------------------------------------------------------------------------
........................................................................................................................................TGACAAGACTGACTACATGGTCGGGA.......................2611.001.00-----------------------------------1.00---------------------------------------------------------------------------
...............................................................................CATTGGGCCTGGGAGGGGC.......................................................................................1911.001.00------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................TGACAAGACTGACTACATG..............................1911.001.00-------------------1.00-------------------------------------------------------------------------------------------
...................................................................................................................................................ACTACATGGTCGGGAGCTATGGGCCGAGGG........3011.001.00-----------------1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................GACTACATGGTCGGGAGCTATGGGCCGAGGG........3111.001.00--------------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................ACTACATGGTCGGGAGCTATGGGC..............2411.001.00-------------------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................GAGCTATGGGCCGAGGGCCGAG...2211.001.00----------------------------------------1.00----------------------------------------------------------------------
.....CCGGCATGAAGTACATCCAACACACATAC.......................................................................................................................................................2911.001.00------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................TGACTACATGGTCGGGAGCTATGGGCC.............2711.001.00--------------------------------------------1.00------------------------------------------------------------------
...............................................................................CATTGGGCCTGGGAGGGGCGTGC...................................................................................2311.001.00------------------1.00--------------------------------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGCAAA................................................................................2411.001.00-----------------------------------------------------1.00---------------------------------------------------------
................................................................................................................................................................GAGCTATGGGCCGAGGGCCGAGG..2311.001.00--------1.00------------------------------------------------------------------------------------------------------
....TCCGGCATGAAGTACATCCAACACACAT.........................................................................................................................................................2811.001.00--------------------------1.00------------------------------------------------------------------------------------
..................................................................................TGGGCCTGGGAGGGGCGTGC...................................................................................2011.001.00-----1.00---------------------------------------------------------------------------------------------------------
........................................................................................................................................................ATGGTCGGGAGCTATGGGCCGAGGGCCGAGGA.3211.001.00-------------1.00-------------------------------------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGCAA.................................................................................2311.001.00------------------------1.00--------------------------------------------------------------------------------------
...................................................................................................................................................ACTACATGGTCGGGAGCTATGGGCCGAGT.........291.000.00------------------------------------------------------------------------------------------------1.00--------------
...............................................................................CATTGGGCCTGGGAGGGGCGTGAAGT................................................................................2611.001.00----------------------------------------------------------------------1.00----------------------------------------
.......................AACACACATACAGGAAAGGGGTC...........................................................................................................................................2311.001.00----------------------------------------------------1.00----------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGCAT.................................................................................2411.009.00--------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................TCGGGAGCTATGGGCCGAGGGCCGAGGAG2911.001.00-------1.00-------------------------------------------------------------------------------------------------------
..................................AGGAAAGGGGTCAAAATTGA...................................................................................................................................201.000.00---------------------------------------1.00-----------------------------------------------------------------------
...........TGAAGTACATCCAACACACATACAGGAA..................................................................................................................................................2811.001.00-------------------------------------------------1.00-------------------------------------------------------------
..............AGTACATCCAACACACA..........................................................................................................................................................1711.001.00----------------------------------------------------------------------------------------------------1.00----------
..................................................GTGAGTGGGCGGGCCATAGAGTGGG..............................................................................................................2511.001.00-----------------1.00---------------------------------------------------------------------------------------------
..................CATCCAACACACATACAGG....................................................................................................................................................1911.001.00-------------------------------------------------------------------------1.00-------------------------------------
....................................................................................................................TGCCTCTCCTGTCCCTCCGAT................................................211.000.00----------1.00----------------------------------------------------------------------------------------------------
............................ACATACAGGAAAGGGGTCAAAATT.....................................................................................................................................241.000.00-------------------1.00-------------------------------------------------------------------------------------------
..TGTCCGGCATGAAGTACATC...................................................................................................................................................................2011.001.00------------1.00--------------------------------------------------------------------------------------------------
................................................................................ATTGGGCCTGGGAGGGGCGTGT...................................................................................2211.005.00---------------------------1.00-----------------------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGTTT.................................................................................231.000.00---------------------------1.00-----------------------------------------------------------------------------------
..TGTCCGGCATGAAGTACATCCAACACA............................................................................................................................................................2711.001.00-----------------------------------1.00---------------------------------------------------------------------------
...............................TACAGGAAAGGGGTCAAAAT......................................................................................................................................2011.002.00-------------------------------------------------------------------------------1.00-------------------------------
....TCCGGCATGAAGTACATCCA.................................................................................................................................................................2011.001.00--------------------1.00------------------------------------------------------------------------------------------
........................................................................................................................................TGACAAGACTGACTACATGGTCGGGAG......................2711.001.00-------------------------------------------------------------------------------------------------1.00-------------
..............AGTACATCCAACACACAT.........................................................................................................................................................1811.001.00--------------------1.00------------------------------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGTGG.................................................................................231.000.00--------------------------------------1.00------------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGCA..................................................................................2211.001.00---------------------------------------------------------1.00-----------------------------------------------------
.....CCGGCATGAAGTACATCCAACACACATACA......................................................................................................................................................3011.001.00--------------------------------1.00------------------------------------------------------------------------------
....................................................................................................................TGCCTCTCCTGTCCCTCCGTA................................................211.000.00---1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................GACTGACTACATGGTCGGGGG......................211.000.00-----------------------------------------1.00---------------------------------------------------------------------
.................................................................................TTGGGCCTGGGAGGGGCGTGA...................................................................................211.000.00-1.00-------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GGAGCTATGGGCCGAGGGCC......2011.001.00-----------------------------------------------------------------------------------------1.00---------------------
.................................................................................................................................................TGACTACATGGTCGGGAGGA....................201.000.00-------------------------------------1.00-------------------------------------------------------------------------
...........................CACATACAGGAAAGGGGTCA..........................................................................................................................................2011.001.00--------1.00------------------------------------------------------------------------------------------------------
......................................................................................................................CCTCTCCTGTCCCTCAGT.................................................1811.001.00----------------------------------------------------------1.00----------------------------------------------------
.................ACATCCAACACACATACA......................................................................................................................................................1830.670.67-------------------------------------0.67-------------------------------------------------------------------------
............................................................................................................................................AAGACTGACTACATGGTCGGGAGCT....................2520.500.50---------------------0.50-----------------------------------------------------------------------------------------
.............................................................................................................................................AGACTGACTACATGGTCGG.........................1920.500.50---------------------------------------0.50-----------------------------------------------------------------------
.........................................................................................................................................GACAAGACTGACTACATGGTCGGGAGC.....................2720.500.50---------------------------------------------------------------0.50-----------------------------------------------
...........................................................................................................................................CAAGACTGACTACATGGTC...........................1920.500.50------------------------------------------------------------------------------------------------------0.50--------
................................................................................................................................................CTGACTACATGGTCGG.........................1620.500.50---------------------------------------------------0.50-----------------------------------------------------------
..................................................................................................................................................GACTACATGGTCGGG........................1520.500.50-------------------------------------------------------------0.50-------------------------------------------------
.........................................................................................................................................GACAAGACTGACTACATGGTCGGG........................2420.500.50----------------------0.50----------------------------------------------------------------------------------------
.................................CAGGAAAGGGGTCAAAA.......................................................................................................................................1720.500.50---------------------------------------0.50-----------------------------------------------------------------------
............................................................................................................................................AAGACTGACTACATGGTCGGGAG......................2320.500.50----------------------------------------0.50----------------------------------------------------------------------
................................................................................................................................................CTGACTACATGGTCGGGAGCTATGG................2520.500.50---------------------------------------------------0.50-----------------------------------------------------------
.................................CAGGAAAGGGGTCAAAATT.....................................................................................................................................1920.500.50--------------------0.50------------------------------------------------------------------------------------------
................................................................................................................................................CTGACTACATGGTCGGGAG......................1920.500.50---------------------------------------------------------------------------------------------------------0.50-----
.........................................................................................................................................GACAAGACTGACTACATGGT............................2020.500.50--------------------------------------------------------------------------------------------------------0.50------
..................................................GTGAGTGGGCGGGCC........................................................................................................................1540.250.25----------------------------------------------------------------------------------------------------------0.25----
.............................................................................................................................................AGACTGACTACATGG.............................1550.200.20-----------------------------------------------------------------------------------------------------------0.20---
..........................................................................GGAGCCATTGGGCCT................................................................................................1560.170.17------------------------------------------------------------------------------------------------------------0.17--
..................................................................................TGGGCCTGGGAGGGGC.......................................................................................1680.120.12--------------------------------------------------------------------------------------------------------------0.12

Antisense strand
CGTGTCCGGCATGAAGTACATCCAACACACATACAGGAAAGGGGTCAAAAGTGAGTGGGCGGGCCATAGAGTGGGGAGCCATTGGGCCTGGGAGGGGCGTGCAGCACCAGTAATCCTGCCTCTCCTGTCCCTCAGTTGACAAGACTGACTACATGGTCGGGAGCTATGGGCCGAGGGCCGAGGAG
...........................................................................(((.....((((..(((((((((((((.......)))....)))))))))))))))))....................................................
...........................................................................76.........................................................135................................................
SizePerfect hitTotal NormPerfect NormmjTestesWT4()
Testes Data. (testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjTestesWT3()
Testes Data. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjLiverWT1()
Liver Data. (liver)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR038741(GSM527276)
small RNA-Seq. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR037900(GSM510436)
testes_rep1. (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR206942(GSM723283)
other. (brain)		GSM475281(GSM475281)
total RNA. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
......................................................................................................................CCTCTCCTGTCCCTCAGTTGACA............................................ 2317.007.007.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................TGCCTCTCCTGTCCCTCAGTTGACA............................................ 2517.007.004.00------3.00-------------------------------------------------------------------------------------------------------
..................................................................................................................CCTGCCTCTCCTGTCCCTCAGTTGACA............................................ 2716.006.006.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................................GCCTCTCCTGTCCCTCAGTTGACAA........................................... 2514.004.00----1.00---------1.00--2.00---------------------------------------------------------------------------------------------
....TCCGGCATGAAGTACATCCAACACACA.......................................................................................................................................................... 2714.004.00----4.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................GCCTCTCCTGTCCCTCAGTTGACAAGACT....................................... 2913.003.00----3.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................GCCTCTCCTGTCCCTCAGTTGACA............................................ 2413.003.00----1.00--2.00-------------------------------------------------------------------------------------------------------
......................................................................................CCTGGGAGGGGCGTGCAGCACCAGTA......................................................................... 2612.002.00--------------2.00------------------------------------------------------------------------------------------------
...............................................................................CATTGGGCCTGGGAGGGGCGTGCAGCA............................................................................... 2711.001.00-------------------------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................................GCCGAGGGCCGAGGATC 171.000.00------------------------------------------------------------1.00--------------------------------------------------
.....................................................................................................................GCCTCTCCTGTCCCTCAGTTGACAAGAC........................................ 2811.001.00-------1.00-------------------------------------------------------------------------------------------------------
...........TGAAGTACATCCAACAAA............................................................................................................................................................ 181.000.00--------------------------------------------------------------------------1.00------------------------------------
......................................................................................................................CCTCTCCTGTCCCTCAGTTGACAAGAC........................................ 2711.001.00-----------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................GCCTCTCCTGTCCCTCAGTTGACAAGA......................................... 2711.001.00--------------------------------------------------------------------------------------------1.00------------------
.........................................................................................................................CTCCTGTCCCTCAGTTGAC............................................. 1911.001.00----------------------------------------------------------------------------------------------1.00----------------
......................................................................................................................CCTCTCCTGTCCCTCAGTTGACAAGACT....................................... 2811.001.00--------------1.00------------------------------------------------------------------------------------------------
.....................CCAACACACATACAGGAA.................................................................................................................................................. 1820.500.50-------------------------------------------------------------------------------------------------------0.50-------
.....................................................................................................................GCCTCTCCTGTCCCTC.................................................... 1680.120.12-------------------------------------------------------------------------------------------------------------0.12-