ID: uc007lgi.12
GENE: Erbb2(13)
chr11:98289311-98289499+


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(5)
BRAIN 		(2)
CELL-LINE 		(1)
DGCR8.mut 		(5)
EMBRYO 		(1)
ESC 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(1)
LUNG 		(5)
OTHER 		(1)
OTHER.mut 		(1)
OVARY 		(1)
PANCREAS 		(3)
PIWI.ip 		(1)
PIWI.mut 		(7)
SKIN 		(1)
SPLEEN 		(8)
TESTES 		(1)
UTERUS

Sense strand
CAGTTCCTCCGGGGCCAGGAGTGTGTGGAGGAGTGCCGAGTATGGAAGGGGTACGAATTGCAGAGGAGTGGGTGGCTTGAGGGGTACTCGGGGTACTCTGCCCCACCCCAACCCCTTACTACACCCACCTCTCTCACAGGCTCCCCAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCATGCCACCCCG
..........................................................((.((((..(((((((...((((((((....(((((.....)))))......))))))))...)))))))..)))))).....................................................
..................................................51......................................................................................139................................................
SizePerfect hitTotal NormPerfect NormAgo1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesWT3()
Testes Data. (testes)		SRR037897(GSM510433)
ovary_rep2. (ovary)
....................................................................................................................TACTACACCCACCTCTCTCACA...................................................22122.0022.0010.004.003.00----1.00--------1.00---1.00----------------1.001.00--
....................................................................................................................TACTACACCCACCTCTCTCAC....................................................21114.0014.008.003.001.00---1.00--------------------1.00-------------
....................................................................................................................TACTACACCCACCTCTCTCACT...................................................2219.0014.001.002.002.00---2.00---2.00------------------------------
....................................................................................................................TACTACACCCACCTCTCTCACC...................................................2219.0014.004.005.00---------------------------------------
.................................TGCCGAGTATGGAAGGG...........................................................................................................................................1717.007.00---7.00-------------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAGT...........................................................................................................2415.002.00-1.002.00-1.001.00-----------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGA.............................................................................................................2214.004.00----1.00---1.00----------------1.00--1.00------------
....................................................................................................................TACTACACCCACCTCTCTCATT...................................................2213.002.001.00----2.00-----------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAG............................................................................................................2312.002.00----1.00------------1.00-----------------------
..................................................................................................................CTTACTACACCCACCTCTCTCA.....................................................2212.002.002.00----------------------------------------
....................................................................................................................TACTACACCCACCTCTCTCA.....................................................2012.002.00-1.00----1.00----------------------------------
...................................................................................................................TTACTACACCCACCTCTCTCAC....................................................2212.002.00-1.00-----------------------------1.00---------
.........................................................TTGCAGAGGAGTGGGTGGCTTGA.............................................................................................................2312.002.00-2.00---------------------------------------
...................................................................................................................TTACTACACCCACCTCTCTCA.....................................................2112.002.001.001.00---------------------------------------
..................................................GTACGAATTGCAGAGGAGTGGGTGGCT................................................................................................................2712.002.00----------------------1.001.00-----------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAT............................................................................................................2312.004.00-1.00--1.00------------------------------------
.....................................................................GGGTGGCTTGAGGGGGGTT.....................................................................................................191.000.00--------------------------------1.00--------
......................GTGTGGAGGAGTGCCGAGT....................................................................................................................................................1911.001.00------------1.00----------------------------
.......TCCGGGGCCAGGAGTGTGTGGAGGA.............................................................................................................................................................2511.001.00-------1.00---------------------------------
...................................................................................................................TTACTACACCCACCTCTCTCTT....................................................2211.001.00--1.00--------------------------------------
.........................................................................................................................................................ATGTGAGGGGCAAGCACTGT................2011.001.00------------------------------------1.00----
..........................................................TGCAGAGGAGTGGGTGGCTTG..............................................................................................................2111.001.00----------------------------------1.00------
....................................................................................................................TACTACACCCACCTCTCTCACCG..................................................2311.0014.001.00----------------------------------------
....................................................................................................................................................GGAGTATGTGAGGGGCAAGCACTGTC...............2611.001.00-----------------------------1.00-----------
...................................................................................................................TTACTACACCCACCTCTCTCACT...................................................2311.002.00-----1.00-----------------------------------
.................................TGCCGAGTATGGAAGGGGTAC.......................................................................................................................................2111.001.00---------------------1.00-------------------
...................................................................................................................TTACTACACCCACCTCTCTCAT....................................................2211.002.00--------------1.00--------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGC.............................................................................................................2211.001.00----1.00------------------------------------
....................................................................................................................TACTACACCCACCTCTCTCC.....................................................201.000.00-1.00---------------------------------------
............................................................CAGAGGAGTGGGTGGCTTGAGA...........................................................................................................221.000.00------------------------------1.00----------
..........................................................TGCAGAGGAGTGGGTGGCTTGAA............................................................................................................2311.004.00--------1.00--------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGATT...........................................................................................................2411.004.00----1.00------------------------------------
..................................................GTACGAATTGCAGAGGAGTGGGTGGC.................................................................................................................2611.001.00-------------1.00---------------------------
...................................................................................................................TTACTACACCCACCTCTCTC......................................................2011.001.00-----------------------------------1.00-----
.............................................................AGAGGAGTGGGTGGCTAT..............................................................................................................181.000.00---------------1.00-------------------------
...................................................................................................................................................................CAAGCACTGTCTGCCATGC.......1911.001.00---------------------------------1.00-------
....................................................................................................................TACTACACCCACCTCTCTCAA....................................................2111.002.00-----1.00-----------------------------------
.........................................................TTGCAGAGGAGTGGGTGG..................................................................................................................1820.500.50-0.50---------------------------------------
..............................................................GAGGAGTGGGTGGCTTGAG............................................................................................................1920.500.50----------------------------------------0.50
............GGCCAGGAGTGTGTGGAG...............................................................................................................................................................1820.500.50---------------------------------------0.50-

Antisense strand
CAGTTCCTCCGGGGCCAGGAGTGTGTGGAGGAGTGCCGAGTATGGAAGGGGTACGAATTGCAGAGGAGTGGGTGGCTTGAGGGGTACTCGGGGTACTCTGCCCCACCCCAACCCCTTACTACACCCACCTCTCTCACAGGCTCCCCAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCATGCCACCCCG
..........................................................((.((((..(((((((...((((((((....(((((.....)))))......))))))))...)))))))..)))))).....................................................
..................................................51......................................................................................139................................................
SizePerfect hitTotal NormPerfect NormAgo1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesWT3()
Testes Data. (testes)		SRR037897(GSM510433)
ovary_rep2. (ovary)
..................................................................................................TGCCCCACCCCAACCCTAAA....................................................................... 201.000.00------------------------1.00----------------
...........................................................................................................CCAACCCCTTACTACACC................................................................ 181.000.00-------------------1.00---------------------
.......................................................................................................................TACACCCACCTCTCTCATAG.................................................. 201.000.00---------1.00-------------------------------
...................................................................................................GCCCCACCCCAACCCCTGGTC..................................................................... 211.000.00------------------1.00----------------------
.......................................................................................................................TACACCCACCTCTCTCA..................................................... 1711.001.00---------1.00-------------------------------
.............................................................................................TACTCTGCCCCACCCCAGCCC........................................................................... 211.000.00-----------1.00-----------------------------
......................................................................................................CCACCCCAACCCCTTAAAA.................................................................... 191.000.00--------------------------1.00--------------
................................................GGGTACGAATTGC................................................................................................................................ 1330.330.33-----------0.33-----------------------------