ID: uc007kyq.19
GENE: Cacna1g(19)
chr11:94295397-94295646-


(15)
AGO2.ip 		(1)
B-CELL 		(33)
BRAIN 		(2)
DGCR8.mut 		(3)
EMBRYO 		(1)
ESC 		(2)
FIBROBLAST 		(1)
LIVER 		(1)
LYMPH 		(3)
OTHER 		(1)
TESTES 		(2)
TOTAL-RNA

Sense strand
GCTTAGTAACTGGCCTCTGGCCTCACAGTTCTATAGACTGAAGCCAGATCCTAACTGAGGCACTGGGTTCCAGACACCACCAGTGAACGTCTCTTCTCCCAGTGTCGATTCCAGGGAGGCTCACAGAATAGGGGCACACAGGAGAAGTGAAGGCCCTTGCAGCCTCTGCTGAGATCATTTCTCCTCTGCTTACCCTGCAGCCAAGTGCCCGAAGCTCCCCGCACAGTCCCTGGAGCGCAGCAAGCAGCTG
................................................................................................................................(((((...((.(((((((((((..((....))...(((....))).))))))))))).))....))))).....................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR206941(GSM723282)
other. (brain)		SRR206940(GSM723281)
other. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
................................................................................................................................TAGGGGCACACAGGAGAAGTGA....................................................................................................22196.0096.0026.0022.0011.0010.006.00-1.001.002.00-1.001.00--1.001.002.00-1.002.00-----1.00-1.00---1.001.00-----1.00-1.001.001.00-----
................................................................................................................................TAGGGGCACACAGGAGAAGT......................................................................................................20117.0017.009.001.00-2.00-----3.00---1.00-------------------------------1.00--
................................................................................................................................TAGGGGCACACAGGAGAAGTG.....................................................................................................2118.008.003.00---1.00-2.00-1.00------------1.00--------------------------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGC....................................................2117.007.00---1.003.00------------1.00-------------------1.00------1.00---
................................................................................................................................TAGGGGCACACAGGAGAAG.......................................................................................................1915.005.001.002.00-1.00--1.00-----------------------------------------
...............................................................................................................................ATAGGGGCACACAGGAGAAGT......................................................................................................2114.004.001.001.002.00---------------------------------------------
.................................................................................................................................AGGGGCACACAGGAGAAGTGA....................................................................................................2114.004.00--1.00-------1.00------------1.00-------------------1.00----
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCA...................................................2214.004.00---1.001.00--1.00------------1.00---------------------------
................................................................................................................................TAGGGGCACACAGGAGAAGTGAA...................................................................................................2313.003.001.00-2.00---------------------------------------------
................................................................................................................................TAGGGGCACACAGGAGAAGGGA....................................................................................................2212.005.00--1.00-------------------------------------------1.00-
................................................................................................................................................................................ATTTCTCCTCTGCTTACCCTGT....................................................222.000.00--2.00---------------------------------------------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCAT..................................................2312.004.001.00-1.00---------------------------------------------
..............................................................................................................................AATAGGGGCACACAGGAGAAGT......................................................................................................2212.002.00---1.00--------------1.00-----------------------------
................................................................................................................................TAGGGGCACACAGGAGAAGTCA....................................................................................................2212.0017.001.00--1.00--------------------------------------------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCAG..................................................2312.002.00--1.00----1.00----------------------------------------
...............................................................................................................................ATAGGGGCACACAGGAGAAG.......................................................................................................2012.002.00--1.00----1.00----------------------------------------
.......................................................TGAGGCACTGGGTTCTAT.................................................................................................................................................................................181.000.00------------1.00-----------------------------------
................................................................................................................................TAGGGGCACACAGGAGAAGTAG....................................................................................................2211.0017.00---1.00--------------------------------------------
..................................................................................................................................................................................TTCTCCTCTGCTTACCCTGCAA..................................................221.000.00---1.00--------------------------------------------
................................................................................................................................TAGGGGCACACAGGAGAAGTGG....................................................................................................2211.008.00----1.00-------------------------------------------
.......................................................TGAGGCACTGGGTTCTGT.................................................................................................................................................................................181.000.00-----1.00------------------------------------------
.......................................................TGAGGCACTGGGTTCGAG.................................................................................................................................................................................181.000.00------------------------1.00-----------------------
................................................................................................................................TAGGGGCACACAGGAGAAGTGAT...................................................................................................2311.0096.00----------1.00-------------------------------------
....................................................................................................................................GGCACACAGGAGAAGTGA....................................................................................................1811.001.001.00-----------------------------------------------
...............................................................................................................................ATAGGGGCACACAGGAGAATTGA....................................................................................................231.000.00---1.00--------------------------------------------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCATAT................................................2511.004.00-----------1.00------------------------------------
................................................................................................................................................................................ATTTCTCCTCTGCTTACCCTGCT...................................................2311.001.00-----------------1.00------------------------------
..............................................................................................................................AATAGGGGCACACAGGAGAAG.......................................................................................................2111.001.00--------1.00---------------------------------------
................................................................................................................................................................................ATTTCTCCTCTGCTTACCCTGCAT..................................................241.000.00-1.00----------------------------------------------
.......................................................TGAGGCACTGGGTTCAGGA................................................................................................................................................................................191.000.00----------------------------------1.00-------------
.................................................................................................................................AGGGGCACACAGGAGAAGGGA....................................................................................................211.000.00---------------1.00--------------------------------
...............................................................................................................................ATAGGGGCACACAGGAGAAGTGT....................................................................................................231.000.00---------------------------------------1.00--------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCAGA.................................................2411.002.00----1.00-------------------------------------------
................................................................................................................................TAGGGGCACACAGGAGACGT......................................................................................................201.000.00-------------1.00----------------------------------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCAA..................................................2311.004.00-----------------------------------1.00------------
................................................................................................................................TAGGGGCACACAGGAGAAGTGTA...................................................................................................2311.008.00----------------------------1.00-------------------
................................................................................................................................TAGGGGCACACAGGAGAAGTA.....................................................................................................2111.0017.001.00-----------------------------------------------
.................................TAGACTGAAGCCAGACAT.......................................................................................................................................................................................................181.000.00----------------------1.00-------------------------
................................................................................................................................TAGGGGCACACAGGAGAATTGA....................................................................................................221.000.00---1.00--------------------------------------------
................................................................................................................................................................................ATTTCTCCTCTGCTTACCCT......................................................2011.001.00--------------1.00---------------------------------
.......................................................TGAGGCACTGGGTTCTGCT................................................................................................................................................................................191.000.00------------1.00-----------------------------------
.................................................................................................................................................................................TTTCTCCTCTGCTTACCCTGCAGC.................................................2411.001.00-----------1.00------------------------------------
......................................................................................................................................................................................................AGCCAAGTGCCCGAACGGA.................................191.000.00------------------------------------1.00-----------
..........................AGTTCTATAGACTGACGA..............................................................................................................................................................................................................181.000.00-----1.00------------------------------------------
................................................................................................................................................................................ATTTCTCCTCTGCTTACCCTGC....................................................2211.001.00----1.00-------------------------------------------

Antisense strand
GCTTAGTAACTGGCCTCTGGCCTCACAGTTCTATAGACTGAAGCCAGATCCTAACTGAGGCACTGGGTTCCAGACACCACCAGTGAACGTCTCTTCTCCCAGTGTCGATTCCAGGGAGGCTCACAGAATAGGGGCACACAGGAGAAGTGAAGGCCCTTGCAGCCTCTGCTGAGATCATTTCTCCTCTGCTTACCCTGCAGCCAAGTGCCCGAAGCTCCCCGCACAGTCCCTGGAGCGCAGCAAGCAGCTG
................................................................................................................................(((((...((.(((((((((((..((....))...(((....))).))))))))))).))....))))).....................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR206941(GSM723282)
other. (brain)		SRR206940(GSM723281)
other. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
................................................................................................................................TAGGGGCACACAGGAGAAGTGA.................................................................................................... 2211.001.00---------------------------------1.00--------------
........................................................................................................................................................GCCCTTGCAGCCTCTGCAAG.............................................................................. 201.000.00-----1.00------------------------------------------
......................................................................................................................................................................................................................CTCCCCGCACAGTCCCTTTCG............... 211.000.00--------------------------1.00---------------------
.........................................................................................................CGATTCCAGGGAGGC.................................................................................................................................. 1511.001.00-----------------------------1.00------------------
.........................................................................................................CGATTCCAGGGAGGCGTTT.............................................................................................................................. 191.000.00------------------------------1.00-----------------
........................................................................................................................................................GCCCTTGCAGCCTCTACA................................................................................ 181.000.00-----1.00------------------------------------------
.........................................................................................................CGATTCCAGGGAGG................................................................................................................................... 1440.500.50-----0.25-----------------------------------------0.25