ID: uc007ksx.3
GENE: Tmem49(3)
chr11:86478242-86478491-


(1)
AGO.mut 		(4)
AGO2.ip 		(6)
B-CELL 		(11)
BRAIN 		(4)
CELL-LINE 		(8)
EMBRYO 		(8)
ESC 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(3)
LYMPH 		(12)
OTHER 		(2)
OTHER.mut 		(2)
PANCREAS 		(3)
PIWI.ip 		(4)
SPLEEN 		(11)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA

Sense strand
ACAGAAGGCTGATCTGAGTTTGGTACTTTGAACTCCTTAAATTTGCATGGTCTTAATGTTAAATCTCATTTATACTTTTGAGGTATTTTTATGCTATTAGAGATACAAGACAGCAAGGTGGGTCGATTTTTTTTTTTCTTTGAAAACGGTAGCACAGATGTTAGGAATTCTCCTTTAACTTCCATGCTGTTGTTTTTCAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGGATCGGGAAGAAAGACAG
............................................................................................................................................(((((((..(((((..((.(((((((....))))..))).))..)))))..))))).))...................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR073955(GSM629281)
total RNA. (blood)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR037903(GSM510439)
testes_rep4. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037937(GSM510475)
293cand2. (cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206941(GSM723282)
other. (brain)		SRR037938(GSM510476)
293Red. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
............................................................................................................................................TGAAAACGGTAGCACAGATGTT........................................................................................22121.0021.00-----3.00--1.00-2.001.002.00--1.001.00-1.00------1.00--1.00---1.00---1.00------1.00-1.00-------1.00--------------1.00---1.00---
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTT........................................................................................23111.0011.00-2.00--1.00------1.00---1.001.00-------------1.00-------------1.00-1.00--------1.00----------1.00---------
............................................................................................................................................TGAAAACGGTAGCACAGATGT.........................................................................................2116.006.00---3.00-------------------------1.00---1.00---------------------------------1.00--------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGT.........................................................................................2215.005.00--------1.00-----------2.00----------------------------1.001.00-------------------------
............................................................................................................................................TGAAAACGGTAGCACAGATGTTA.......................................................................................2314.004.00----1.00----------------1.00-----------------1.00-----------------------------1.00------
..........................................................................................................................................TTTGAAAACGGTAGCACAGATGT.........................................................................................2313.003.002.00-------------------------------------------------------1.00-------------------
......................................................................................................................................................................................................................CATGAGAAGAAGAGAAGGGATCGGG...........2513.003.003.00---------------------------------------------------------------------------
...................................................................................................................................................................................TTCCATGCTGTTGTTTTTCAGT.................................................223.000.00----------------------------------1.00-------------1.00--------------1.00------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTTAGGAAT..................................................................................2912.002.00------2.00---------------------------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGGATCGGGAAGAAAGACATAA262.000.002.00---------------------------------------------------------------------------
...................................................................................................................................................................................................................................GAAGGGATCGGGAAGAAAGACCGA241.000.00------------------1.00---------------------------------------------------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGATCGGGAA.........2511.001.00-------------1.00--------------------------------------------------------------
.................................................................................................................................................................................................................CAGTTCATGAGAAGAAGAGAAGGGA................2511.001.00----------------------------------------------------------------------1.00-----
..........................................................................................................................................TTTGAAAACGGTAGCACAGATGTT........................................................................................2411.001.00-1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................................GAGAAGGGATCGGGAAGAAAGA...2211.001.00----------------------1.00-----------------------------------------------------
.............................................................................................................................................................................TTTAACTTCCATGCTGTTGTTTTTCAG..................................................2711.001.00---------------------------------------------------1.00------------------------
............................................................................................................................................TGAAAACGGTAGCACAGATG..........................................................................................2011.001.00-----------------------------------------------------------1.00----------------
........................................................................................................................................................................................................................................GATCGGGAAGAAAGACAG1811.001.00--1.00-------------------------------------------------------------------------
...............................................................................................................................................................................................................TTCAGTTCATGAGAAGAAGAGAAGGG.................2611.001.00-------------------1.00--------------------------------------------------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGATCGGGAAGT.......2711.001.00-------------------1.00--------------------------------------------------------
.................................................................................................................................................................................................................................GAGAAGGGATCGGGAAGAAAG....2111.001.00--1.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................GTTCATGAGAAGAAGAGAAGGGA................2311.001.00-------------------------------1.00--------------------------------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTTA.......................................................................................2411.001.00-------1.00--------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGATCGGGAAG........2611.001.00-----------------------------------1.00----------------------------------------
..............................................................................................................................................................................................................................GAAGAGAAGGGATCGGGAAGA.......2111.001.00-------------1.00--------------------------------------------------------------
...............................................................................................................................................................................................................................AAGAGAAGGGATCGGGAAGAAAG....2311.001.00-----------------------1.00----------------------------------------------------
.............................................................................................................................................GAAAACGGTAGCACAGATGTTA.......................................................................................2211.001.00-------1.00--------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGGGATCGGGAAGAAAGAC..2411.001.00---------1.00------------------------------------------------------------------
............................................................................................................................................................................................................................AAGAAGAGAAGGGATCGGGA..........2011.001.00---------1.00------------------------------------------------------------------
.............................................................................................................................................GAAAACGGTAGCACAGATGTT........................................................................................2111.001.00--------------------------1.00-------------------------------------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGGTGT.........................................................................................221.000.00-------------------------------------1.00--------------------------------------
....................................................................................................................................................................................TCCATGCTGTTGTTTTTCAG..................................................2011.001.00--------------------------------------1.00-------------------------------------
........................................................TGTTAAATCTCATTTTGC................................................................................................................................................................................181.000.00----------------------------------------------------------1.00-----------------
.............................................................................................................................ATTTTTTTTTTTCTTTGG...........................................................................................................181.000.00-----------------------------------------------1.00----------------------------
.............................................................................................................................................................................................................................AGAAGAGAAGGGATCGGGAAGAA......2311.001.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGAAGAGAAGGGATCACTG..........191.000.00--------------------------------------------------------------1.00-------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTA........................................................................................2311.005.00------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................................GAAGAGAAGGGATCGGGAAG........2011.001.00----1.00-----------------------------------------------------------------------
...........................................................................................................................CGATTTTTTTTTTTCTCTG............................................................................................................191.000.00------------------------------------------------------------1.00---------------
...........................................................................................................................................................................................................................................CGGGAAGAAAGACAGAAG181.000.00-1.00--------------------------------------------------------------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATG..........................................................................................2111.001.00----------------------------------------------------------------1.00-----------
...................................................................................................................................................................................................................GTTCATGAGAAGAAGAGAAGG..................2111.001.00------------------------------------------------------1.00---------------------
.........................................................................................................................................................................................................................GAGAAGAAGAGAAGGGATCGGGAAGT.......261.000.00---------------------------1.00------------------------------------------------
.....................................................................................................................................................................................................................................AGGGATCGGGAAGAAAGA...1820.500.50-----------------------0.50----------------------------------------------------
..........................................................................................................................................................................................................................AGAAGAAGAGAAGGGATCG.............1920.500.50-------------------------------------------------------------------------0.50--
.........................................................................................................................................................................................................................GAGAAGAAGAGAAGGGAT...............1840.500.50---------------------0.50------------------------------------------------------
.................................................................................................................................................................................ACTTCCATGCTGTTGTTTTTC....................................................2120.500.50----------------------0.50-----------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGGATCGGGAAGAA......1820.500.50---------------------------------------------------------------------------0.50
............................................................................................................................................................................................................CTCTTCAGTTCATGAGA.............................1720.500.50--------------------------------------------------------------------------0.50-
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGA................1840.250.25---------------------0.25------------------------------------------------------

Antisense strand
ACAGAAGGCTGATCTGAGTTTGGTACTTTGAACTCCTTAAATTTGCATGGTCTTAATGTTAAATCTCATTTATACTTTTGAGGTATTTTTATGCTATTAGAGATACAAGACAGCAAGGTGGGTCGATTTTTTTTTTTCTTTGAAAACGGTAGCACAGATGTTAGGAATTCTCCTTTAACTTCCATGCTGTTGTTTTTCAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGGATCGGGAAGAAAGACAG
............................................................................................................................................(((((((..(((((..((.(((((((....))))..))).))..)))))..))))).))...................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR073955(GSM629281)
total RNA. (blood)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR037903(GSM510439)
testes_rep4. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037937(GSM510475)
293cand2. (cell line)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206941(GSM723282)
other. (brain)		SRR037938(GSM510476)
293Red. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
........................................................................................................................GGTCGATTTTTTTTTGCGC............................................................................................................... 193.000.00-----------------2.00-----------------------------------------------------1.00----
...........................................................................................................................................................................CCTTTAACTTCCATGTATC............................................................ 191.000.00------------------------1.00---------------------------------------------------
........................................................................................................................GGTCGATTTTTTTTTTTGG............................................................................................................... 191.000.00---------------------------------------------------------1.00------------------
........CTGATCTGAGTTTGGTAA................................................................................................................................................................................................................................ 181.000.00----------------------------------------------------1.00-----------------------
...GAAGGCTGATCTGAGGC...................................................................................................................................................................................................................................... 171.000.00--------------1.00-------------------------------------------------------------
................................................................................................................................................................................................TTTTTCAGACCCCTCAAA........................................ 181.000.00-----------------------------------------------------------------1.00----------
...............................................................................................................AGCAAGGTGGGTCGATCT......................................................................................................................... 181.000.00--------------1.00-------------------------------------------------------------
..............................................................................................................................TTTTTTTTTTTCTTTGAAAAAAAA.................................................................................................... 241.000.00----------------------------------------1.00-----------------------------------
.........................................................................................................................................................ACAGATGTTAGGAATATG............................................................................... 181.000.00-----------------------------------------1.00----------------------------------