ID: uc007kpj.2
GENE: Ccl9(2)
chr11:83389899-83390148-


(1)
B-CELL 		(3)
BRAIN 		(1)
CELL-LINE 		(1)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(2)
LUNG 		(7)
OTHER 		(1)
OTHER.mut 		(1)
SPLEEN 		(1)
TESTES

Sense strand
TGTTTTGTTTTGTTTTTTAAGATCCCAGAAAAATCTCATGTCACCTAAGGGGATAAATGAGTCTAGAGCAGATCCTAGACTCCAAGTGTGTGATGGTGGTCCTCAGCAGAGCCTTCTCAGCCTTGGCAAGAATCGGGGTGGGGATGGTGAGTAGAGATGCTAAGACAATGATGCTAACCTCTGCCCTCTGTCTCTTCCAGCAACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCAAGGGCTT
........................................................................................................................................((.((((((((...((((((..((............))....))))))...)))))))).))....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		mjLiverWT1()
Liver Data. (liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		mjLiverWT3()
Liver Data. (liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
.........................................................................................................................................GTGGGGATGGTGAGTAGAGAT............................................................................................21125.0025.0020.00-1.00---1.00-1.00---2.00----------
...................................................................................................................................................................................TCTGCCCTCTGTCTCTTCCAGT.................................................22120.004.001.0014.00---1.00-3.00------1.00--------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGA.............................................................................................20115.0015.009.00-2.003.00--1.00----------------
........................................................................................................................................GGTGGGGATGGTGAGTAG................................................................................................1819.009.009.00----------------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGA.............................................................................................2119.009.007.00--1.00--1.00----------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGAT............................................................................................2218.008.008.00----------------------
...................................................................................................................................................................................TCTGCCCTCTGTCTCTTCCAGTTT...............................................2416.004.00----6.00------------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAGAGAT............................................................................................2316.006.006.00----------------------
.......................................................................................................................................GGGTGGGGATGGTGAGTA.................................................................................................1816.006.006.00----------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTAGAGA.............................................................................................2315.005.002.00-2.00------------------1.00-
...................................................................................................................................................................................TCTGCCCTCTGTCTCTTCCAG..................................................2114.004.00----2.00----------1.00--1.00----
....................................................................................................................................TCGGGGTGGGGATGGTGAGTAGAGA.............................................................................................2514.004.003.00-----1.00----------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAGAGA.............................................................................................2214.004.004.00----------------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGATT...........................................................................................2214.0025.002.00-1.001.00-------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATGCTA........................................................................................2413.003.001.00-------2.00--------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGAA............................................................................................2113.0015.001.00--1.00--1.00----------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAG................................................................................................1913.003.003.00----------------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGAA............................................................................................2213.009.003.00----------------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGATA...........................................................................................2213.0025.003.00----------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATG...........................................................................................2113.003.001.00-2.00--------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATGCT.........................................................................................2313.003.002.00------------1.00---------
....................................................................................................................................TCGGGGTGGGGATGGTGAGTAGA...............................................................................................2313.003.003.00----------------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAGA...............................................................................................2013.003.003.00----------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATGCTT........................................................................................2412.003.001.00-1.00--------------------
....................................................................................................................................................................................................................AAGAAGTCCAGAGCAGTCTGAAGGC.............2512.002.00-----2.00-----------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGATG...........................................................................................2212.002.002.00----------------------
.....................................................................................................................................CGGGGTGGGGATGGTGAGTAGAGA.............................................................................................2412.002.002.00----------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTA.................................................................................................1912.002.002.00----------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATGC..........................................................................................2212.002.001.00-1.00--------------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGAAA...........................................................................................2312.009.002.00----------------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAGAAAAT...........................................................................................2411.003.001.00----------------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGAC............................................................................................2111.0015.001.00----------------------
.......................................................................................................................................................................................................................AAGTCCAGAGCAGTCTGAAGGC.............2211.001.00-----1.00-----------------
...............................................................................................................................AAGAATCGGGGTGGGGATGGTG.....................................................................................................2211.001.00---1.00-------------------
....................................................................................................................................TCGGGGTGGGGATGGTGAGTAGAG..............................................................................................2411.001.001.00----------------------
....................................................................................................................................................................................................................AAGAAGTCCAGAGCAGTCTGAA................2211.001.00-----1.00-----------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGATAA..........................................................................................2311.0025.00---1.00-------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTAGAG..............................................................................................2211.001.001.00----------------------
............................................................................................................................................GGGATGGTGAGTAGAGATGCTA........................................................................................2211.001.001.00----------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTAGA...............................................................................................2111.001.001.00----------------------
...........................................................................................................................................................................................................CAGAGACAAAAGAAGTCCAG...........................2011.001.001.00----------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATT...........................................................................................2111.001.001.00----------------------
........................................................................................................................................GGTGGGGATGGTGAGAAGA...............................................................................................191.000.001.00----------------------
..................................................................................................................................................................................................................................AGTCTGAAGGCACAGCAAG.....1911.001.00---------1.00-------------
........................................................................................................................................GGTGGGGATGGTGAGCAG................................................................................................181.000.001.00----------------------
...............................................................................................................................................................................AACCTCTGCCCTCTGTAGCT.......................................................201.000.00-----------1.00-----------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGATTT..........................................................................................2411.008.00--------1.00--------------
.....................................................................................................................................CGGGGTGGGGATGGTGAGTAGAGATGC..........................................................................................2711.001.001.00----------------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAGAGATG...........................................................................................2411.001.00--------------------1.00--
......................................................................................................................AGCCTTGGCAAGAATCGGGG................................................................................................................2011.001.001.00----------------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAGAAA...........................................................................................2211.0015.001.00----------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTAGAAA.............................................................................................2311.001.001.00----------------------
..............................................................................................................................CAAGAATCGGGGTGGGGATGG.......................................................................................................2111.001.001.00----------------------
...................................................................................................................................................................................TCTGCCCTCTGTCTCTTCCAGG.................................................2211.004.00-------1.00---------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAAAT............................................................................................221.000.00--1.00--------------------
.........................................................................................................................................................................GATGCTAACCTCTGCGAAC..............................................................191.000.00-------------------1.00---
........................................................................................................................................GGTGGGGATGGTGAGTAGAG..............................................................................................2011.001.001.00----------------------
................................................................................................................................AGAATCGGGGTGGGGCTC........................................................................................................181.000.00-----------1.00-----------
...........................................................................................................................................................................................................CAGAGACAAAAGAAGTCCAGAGCAG......................2511.001.00-------------1.00---------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGATA...........................................................................................2311.008.001.00----------------------
................................................................................................................................................................................ACCTCTGCCCTCTGTCTCTTC.....................................................2111.001.001.00----------------------
................................................................................................................................................................................ACCTCTGCCCTCTGTCTCTTCC....................................................2211.001.001.00----------------------
..................................................................................................................................................................................................................AAAAGAAGTCCAGAGCAGTCTGAAGG..............2611.001.001.00----------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTAGAGT.............................................................................................2311.001.001.00----------------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGT.............................................................................................2111.001.001.00----------------------
....................................................................................................................................TCGGGGTGGGGATGGAGT....................................................................................................181.000.00----------1.00------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATGA..........................................................................................2211.003.00---1.00-------------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGAT............................................................................................2011.001.001.00----------------------
.......................................................................................................................................GGGTGGGGATGGTGAGTAGAGATTT..........................................................................................2511.006.001.00----------------------
................................................................................................................................AGAATCGGGGTGGGGATGGA......................................................................................................201.000.00--1.00--------------------
......................................................................................................................................GGGGTGGGGATGGTGAGTAG................................................................................................2011.001.001.00----------------------
........................................................................................TGTGATGGTGGTCCTCAGCAGAGCC.........................................................................................................................................2511.001.00----------------1.00------
....................................................................................................................................TCGGGGTGGGGATGGAT.....................................................................................................171.000.00----------1.00------------
..................................................................................................................................................................................................................AAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCA.......3311.001.00---------1.00-------------
..........................................................................................................................................TGGGGATGGTGAGTAGATATG...........................................................................................211.000.00---1.00-------------------
........................................................................................................................................GGTGGGGATGGTGAGTAGAGATTTT.........................................................................................2511.008.001.00----------------------
......................................................................................................................................................................................................................GAAGTCCAGAGCAGTCTGAAGGCA............2411.001.00---------1.00-------------
..........................................................................................................................................TGGGGATGGTGAGTAGAGATGCAA........................................................................................2411.002.00---1.00-------------------
.........................................................................................................................................GTGGGGATGGTGAGTAGAG..............................................................................................1920.500.500.50----------------------
..................................................................................................................................AATCGGGGTGGGGA..........................................................................................................14100.100.10----------------------0.10

Antisense strand
TGTTTTGTTTTGTTTTTTAAGATCCCAGAAAAATCTCATGTCACCTAAGGGGATAAATGAGTCTAGAGCAGATCCTAGACTCCAAGTGTGTGATGGTGGTCCTCAGCAGAGCCTTCTCAGCCTTGGCAAGAATCGGGGTGGGGATGGTGAGTAGAGATGCTAAGACAATGATGCTAACCTCTGCCCTCTGTCTCTTCCAGCAACAGAGACAAAAGAAGTCCAGAGCAGTCTGAAGGCACAGCAAGGGCTT
........................................................................................................................................((.((((((((...((((((..((............))....))))))...)))))))).))....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		mjLiverWT1()
Liver Data. (liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		mjLiverWT3()
Liver Data. (liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TCTGCCCTCTGTCTCTAGA.................................................... 191.000.00-----------------1.00-----
.......................................................................................................................................................................ATGATGCTAACCTCTGCCCTCT............................................................. 2211.001.001.00----------------------