ID: uc007jqe.16
GENE: Kdm6b(6)
chr11:69220781-69220976-


(1)
AGO.mut 		(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(18)
BRAIN 		(5)
CELL-LINE 		(4)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(10)
ESC 		(3)
FIBROBLAST 		(3)
KIDNEY 		(9)
LIVER 		(1)
LUNG 		(4)
LYMPH 		(23)
OTHER 		(1)
OTHER.ip 		(8)
OTHER.mut 		(6)
PIWI.ip 		(3)
PIWI.mut 		(2)
SKIN 		(3)
SPLEEN 		(1)
TDRD1.ip 		(39)
TESTES 		(2)
THYMUS 		(2)
TOTAL-RNA 		(3)
UTERUS

Sense strand
ATGGAGGAAGCTTCGCCGAGCTGGGACCCCGGATTGGCCGCTTGCAGCAGGTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCCAGGCCCAGCTCTGGAACTTTCATGCCGGTTCCTGTCAGCACAGAGCCAAGGT
...................................................(((((...(((((((.(((((.(((....(((((((......)))))))....))).)))))..)))...((.....))....))))..)))))...................................................
..................................................51.............................................................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesWT4()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjTestesWT3()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR014235(GSM319959)
2 dpp total. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553586(SRX182792)
source: Testis. (testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjLiverWT1()
Liver Data. (liver)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR206940(GSM723281)
other. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR037937(GSM510475)
293cand2. (cell line)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM475281(GSM475281)
total RNA. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR065050(SRR065050)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR073955(GSM629281)
total RNA. (blood)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
..................................................GTGGGACGAGGCAGGACATTAGGTGG........................................................................................................................261342.00342.0091.00-30.0038.0030.0029.0020.0019.003.00-14.00-17.00-1.001.0012.004.004.006.00--2.001.00-----1.003.001.00--2.00-1.00-----2.002.002.00------1.001.00------------1.00--1.00------------1.00--------------1.00-------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGC.......................................................................................................................271197.00197.0016.0066.0017.0010.006.0013.007.003.0017.008.001.00-1.00-11.00---2.003.001.00-2.00--1.00--1.001.00-1.00----------1.00---1.00-5.00-------------------1.00--------------------------------------------1.00--------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTG.........................................................................................................................251197.00197.0025.0013.0027.0014.0016.0014.009.0012.004.0010.009.00-5.00-1.00-2.007.006.001.00-----1.00---1.001.001.00-1.002.00-1.00---------1.00----2.001.00----1.00-1.00--1.00-1.001.00-1.001.00-----------------1.00------------------------1.00------------------------1.00---------
..................................................GTGGGACGAGGCAGGACATTAGG...........................................................................................................................23177.0077.001.00-6.001.004.001.001.001.003.00-1.002.00--1.004.00-3.00-2.00-3.00-3.00-1.00-4.00-1.00-1.002.00---1.002.001.002.00---1.001.003.001.00------2.00--1.00--1.001.00----1.00-1.00-1.00--1.00------1.00------1.00----1.00--1.00------------1.00------1.00------1.00------------1.001.00--1.00-------
..................................................GTGGGACGAGGCAGGACATTAGGT..........................................................................................................................24163.0063.003.00-5.00-4.00-1.00-2.00--2.00--1.003.00-2.001.00--4.00-1.0012.00--1.00-1.00---1.00-1.001.00-------1.00-1.002.00--1.00-----1.00-1.001.00-3.00-2.00-------1.00---1.00-----------------------1.00-1.00--------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCT......................................................................................................................28160.0060.003.00-1.002.003.00-1.00-8.00--1.00--------1.00--3.00-1.00-1.006.00--1.001.00--5.001.00-1.00----1.00--------------2.00----------1.00-1.00-----2.00------2.00---2.00-2.00-1.00-------1.00---1.001.001.00-----1.00--------------1.00------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGT........................................................................................................................26148.00197.0012.00-5.007.002.008.00-2.001.003.003.00-2.00---1.00--1.001.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGT.......................................................................................................................27129.00342.0018.00--2.00-1.001.001.00--2.00-1.00-----1.001.00--------------------------------1.00---------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAG............................................................................................................................22127.0027.001.00-----4.00----5.00-----------2.00-1.00---1.00--------1.004.00-------------2.00--------1.00---------1.00---1.00-----1.00------------------------------------------------1.001.00-------------
..................................................GTGGGACGAGGCAGGACAT...............................................................................................................................19126.0026.00--------------------2.00-9.00----------1.00------5.003.00-------------1.00----------2.001.00---------------------1.00------------------------------------1.00-------------------
..................................................GTGGGACGAGGCAGGACATT..............................................................................................................................20126.0026.00--1.00--------1.00---------2.00----2.001.00---1.002.001.00---1.00---2.00------------2.002.001.001.00--1.00------------------------------1.00-----------1.00------------1.00-1.00--------------1.00------------
..................................................GTGGGACGAGGCAGGACATTAGGTGA........................................................................................................................26122.00197.00-17.002.001.00-1.00------------------------------------1.00-------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGG........................................................................................................................25119.0019.002.00-1.006.002.00-----1.00-3.00---1.00-------------1.001.00-----------1.00------------------------------------------------------------------------------------------------------
............................CCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................22111.0011.00---------11.00----------------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGC.......................................................................................................................26110.0010.003.00-1.00-1.001.00----4.00---------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTA.....................................................................................................................2919.009.001.00------1.001.003.00--------------------------1.00-------------------------------------------1.00----------------------------------1.00------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGCTA.....................................................................................................................2819.009.001.008.00------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GGGACGAGGCAGGACATTAGGTGGC.......................................................................................................................2519.009.00-7.00--1.00---------------------------------------------------------1.00-----------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCAGT.................................................229.000.00-----------2.00-------------------------------------2.00-------------1.00--------------2.001.00------------------------------1.00-----------------------------------
..................................................GTGGGACGAGGCAGGACATTAT............................................................................................................................2218.008.00---------------2.00----1.00-----------1.001.00-------------1.00-------------------------------------1.00---------------------------------------------------1.00--------
..................................................GTGGGACGAGGCAGGACATTA.............................................................................................................................2118.008.00-------1.00------------------1.001.00-1.00--1.00------------------------1.001.00--------------------------------------1.00------------------------------------------------
..................................................GTGGGACGAGGCAGGACA................................................................................................................................1817.007.00--------1.00------1.00-1.00--1.00-----------------1.00-------------------------------1.00--------------------------------------1.00------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGA...........................................................................................................................2316.0027.00-----------1.00--2.00--------------------------------1.00------1.00-------------------------------------------1.00-----------------------------------------------
..................................................GTGGGACGAGGCAGGAC.................................................................................................................................1716.006.00-------1.00------------1.002.00-----1.00----------1.00-----------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGGGG........................................................................................................................2616.0077.002.00--2.00--1.00------------1.00------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGA.......................................................................................................................2715.00342.00--2.00-2.001.00--------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTA.........................................................................................................................2515.0063.001.00--2.001.00----------------------------------------------------------------------------------------------------------------1.00----------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCCA...................................................9515.005.00-------------5.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGC........................................................................................................................2614.00197.002.00--1.00-----------------------------1.00----------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAA............................................................................................................................2214.008.00-------1.00-------1.00--------------------------1.00-----------------1.00-------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGA..........................................................................................................................2414.0077.00----1.00-1.00---------------------------------------------------------------1.00----------------------1.00----------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAG...................................................................................................................3114.004.00------1.00---------------------2.00-------------------------1.00-------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGT...........................................................................................................................2314.0027.00-----------1.00---1.00-----------------1.00-------------------------------------------------------1.00--------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGGGGC.......................................................................................................................2713.0077.001.002.00------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTT.........................................................................................................................2513.0063.00-------1.00------------1.001.00----------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTG.........................................................................................................................2413.003.002.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACT................................................................................................................................1813.006.00--------------------------------------------------3.00-----------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTA.....................................................................................6113.003.00-------------3.00------------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGCT......................................................................................................................2713.003.00-----1.00--------1.00-1.00---------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGT..................................................................................................................3213.003.00----1.00------1.00-------1.00------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCC....................................................9413.003.00-------------3.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGA..................................................................................................................................1632.672.67--------------1.33-----0.331.00----------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGG...................................................................................................................................1552.202.20--------------------0.20----------------------------------------------------2.00------------------------------------------------------------------------
.......................GGACCCCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................2712.002.00---------------2.00----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAA....................................................................................................................3012.002.00------------------1.00----------1.00--------------------------------------------------------------------------------------------------------------------
.........................................................GAGGCAGGACATTAGGTG.........................................................................................................................1812.002.00---------------------------------------------2.00----------------------------------------------------------------------------------------------------
.........GCTTCGCCGAGCTGGGACCCCGGA...................................................................................................................................................................2412.002.00-------------------------------------1.00-----------1.00------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAT....................................................................................................................3012.009.00----------------------------------------------------1.00----------------------------------------------------------------------------1.00----------------
..................................................GTGGGACGAGGCAGGACATTAGGCGG........................................................................................................................2612.0077.00---1.00--------------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................CTTTGCCCTTTGCCCCTCCCAGAA................................................2412.001.00-----------2.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGGG.........................................................................................................................2512.0077.00-------1.00------------1.00-----------------------------------------------------------------------------------------------------------------------------
....................................................GGGACGAGGCAGGACATTAGGTGGCTA.....................................................................................................................2712.002.001.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................GCCGGTTCCTGTCAGCACAGA........2112.002.00-------------------------------------1.00--------------------------------------------1.00---------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTATT...................................................................................................................3112.009.00----1.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAA...................................................................................................................3112.002.00----------------------------------2.00---------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCC............................................................................................................3812.002.00-------------2.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTATT...........................................................................................................................2312.008.00--------------------2.00-----------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGCTAAT...................................................................................................................3012.001.00----------------------------------------------------------------1.00---------------1.00-----------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCC........................................................................7412.002.00-------------2.00------------------------------------------------------------------------------------------------------------------------------------
......................GGGACCCCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................2812.002.00---------------1.00---------1.00------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCC...........................................................................................5512.002.00-------------2.00------------------------------------------------------------------------------------------------------------------------------------
........................GACCCCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................2612.002.00----1.00----------------------------------------------------------------------------------1.00----------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTACGTG.........................................................................................................................2511.008.00------------------1.00-------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGCTAA....................................................................................................................2911.001.00----------------------------------------------------------------1.00---------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGC..........................................................................................................................2411.0077.00---------------1.00----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCAAGT................................................231.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
...............................................................GGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCCAGAT................................................851.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAA........................................................................................5811.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCAGA.................................................221.000.00------------------------------------------------------------------------------------------------------------1.00-------------------------------------
.......................................................................................................................................................................GCCGGTTCCTGTCAGCAC...........1811.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCCAG..................................................9511.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGG..........................................................................................................................2411.0077.00------------------------------------------------------------------1.00-------------------------------------------------------------------------------
..GGAGGAAGCTTCGCCGAGC...............................................................................................................................................................................1911.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGCGGA.......................................................................................................................2711.0077.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGG.......................................................................................................................2611.0019.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACCTTA.............................................................................................................................2111.006.00---------------------------------------------------------------------------1.00----------------------------------------------------------------------
....................................................GGGACGAGGCAGGACATT..............................................................................................................................1811.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGA.......................................................................................................................2611.0019.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TTGCCCTTTGCCCCTCCCAGTT................................................2211.001.00--------------------------------------------------------------------------------------------------------------------------1.00-----------------------
..................AGCTGGGACCCCGGATTTTTT.............................................................................................................................................................211.000.00-----------------------------------------------------------------------------------------------------------------------1.00--------------------------
...........................................GCAGCAGGTGGGACGAGGCAGG...................................................................................................................................2211.001.00-----------------------------------------------------------------------------------1.00--------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTATGT..........................................................................................................................2411.008.00------------------------------------------------------------1.00-------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTATTT..................................................................................................................3211.009.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------
...........................CCCGGATTGGCCGCTTGCAGCAGGTGGGAC...........................................................................................................................................3011.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACACT..............................................................................................................................2011.007.00-------------------------------------------------------1.00------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAAGTG.........................................................................................................................2511.008.00-------1.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCAGTT................................................231.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTTG........................................................................................................................2611.0063.00------------------1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TTGCCCTTTGCCCCTCCCAG..................................................2011.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................TTTCATGCCGGTTCCTGTCAGCACAG.........2611.001.00------------------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................CTTTGCCCTTTGCCCCTCCCAGT.................................................2311.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTTT........................................................................................................................2611.0063.00----------------------------------------------------------------------------------------------------------------------------1.00---------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCC.....................................................9311.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
........................................................CGAGGCAGGACATTAGGT..........................................................................................................................1811.001.00---------------1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................TAGGTGGCTAAGTTGAGC.............................................................................................................181.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGAGG........................................................................................................................2611.0077.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................ATGCCGGTTCCTGTCAGCACAGAGC......2511.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTTTT.......................................................................................................................2711.0063.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCA....................................................9411.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCAGTAT...............................................241.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
..............GCCGAGCTGGGACCCCGGATT.................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------1.00------------------------------------------------------------
...........................................................................................................................................................TGGAACTTTCATGCCGGTTCCTGTCAGC.............2811.001.00---------------------------------------------------------------------------------1.00----------------------------------------------------------------
.TGGAGGAAGCTTCGCCGA.................................................................................................................................................................................1811.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCCCCC....................................................941.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACTTA..............................................................................................................................2011.006.00---------------------------------------------------------------------------------------------------------------------------1.00----------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGTTT.....................................................................................................................2911.00342.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................AGCTGGGACCCCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................3211.001.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------------
....................................................GGGACGAGGCAGGACATTAGGTGGCTAAGT..................................................................................................................3011.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCC..........................................................................................5611.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGCGGT.......................................................................................................................2711.0077.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTT................................................................................6611.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCAGAAT...............................................241.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TTTGCCCTTTGCCCCTCCCATT.................................................221.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................CTTTGCCCTTTGCCCCTCCCAGTT................................................2411.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTGG............................................................................................................................2211.0026.00----------------------------------------------------------------------------1.00---------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGCG.........................................................................................................................2511.0077.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCGAA....................................................................................................................3011.00197.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
........................................................................GTGGCTAAGTTGTGCCTTCTAGCACAATGT..............................................................................................3011.001.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACAT...............................................................................................................................1811.001.00------------------------------------------------------------------------------------------------------------------------1.00-------------------------
..................................................GTGGGACGAGGCAGGACATTAGTTGT........................................................................................................................2611.0027.00-----------------------------------------------------------1.00--------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACAA...............................................................................................................................1911.007.00---------------------------------------------------------1.00----------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTGGGT..........................................................................................................................2411.0026.00----------------------------------------------1.00---------------------------------------------------------------------------------------------------
............................................................................................................................CTTTGCCCTTTGCCCCTCCCAGA.................................................2311.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAAT.......................................................................................5911.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAG............................................................................................................................2111.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACAAAA.............................................................................................................................2111.007.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------------
..............................................................................AAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCCAGT.................................................691.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGTT.......................................................................................................................2711.00197.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGTTTT....................................................................................................................3011.00342.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTCAGCACAGAGCCAAGGT1911.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGT...............................................................................................................3511.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTC............................................................................7011.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGTAA......................................................................................................................2811.00197.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
................................ATTGGCCGCTTGCAGCAG..................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------------------------------------------------1.00---------------
.TGGAGGAAGCTTCGCCGAGCTGGGACC........................................................................................................................................................................2711.001.00---------------------------------------------------1.00----------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGAG.........................................................................................................................2511.0077.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
.....................TGGGACCCCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................2911.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------------
.................................................................ACATTAGGTGGCTAAGTTGTGCCTT..........................................................................................................2511.001.00------------------------------1.00-------------------------------------------------------------------------------------------------------------------
.........GCTTCGCCGAGCTGGGACCC.......................................................................................................................................................................2011.001.00---------------------------1.00----------------------------------------------------------------------------------------------------------------------
......................GGGACCCCGGATTGGCCGCTTGCA......................................................................................................................................................2411.001.00-------------------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGGGT........................................................................................................................2611.0077.00---------1.00----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TCTGGAACTTTCATGCCGG........................1911.001.00---------------------------------------------------------------------------------------1.00----------------------------------------------------------
...........................CCCGGATTGGCCGCTTGCAGCAG..................................................................................................................................................2311.001.00---------------------1.00----------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGACGAGGCAGGACATTAGGTGGG.......................................................................................................................2711.00342.00-----1.00--------------------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCC.....................................................9211.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------
..............GCCGAGCTGGGACCCCGGA...................................................................................................................................................................1911.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------
............................................................................................................................CTTTGCCCTTTGCCCCTCCCAG..................................................2211.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................TCATGCCGGTTCCTGTCAGCACAGAT.......261.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................GGCCCAGCTCTGGAACTTTCATGC...........................2411.001.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGCCCAGCTCTGGAACTTTCATGC...........................2511.001.00-----------------------------------------------------------------------------------------------------------------------------1.00--------------------
..................................................GTGGGACGAGGCAGGAGAAA..............................................................................................................................2030.672.67----------------------------------0.67---------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................CCGGTTCCTGTCAGCA............1650.200.20----0.20---------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................CGGTTCCTGTCAGCA............1560.170.17-----------------------------------------------------------------------------------------------------------------------------------------------0.17--
...............................................CAGGTGGGACGAGG.......................................................................................................................................1490.110.11-------------------------------------------------------------------------------------------------------------------------------------------------0.11

Antisense strand
ATGGAGGAAGCTTCGCCGAGCTGGGACCCCGGATTGGCCGCTTGCAGCAGGTGGGACGAGGCAGGACATTAGGTGGCTAAGTTGTGCCTTCTAGCACAATGTCCCCAATTAATCTTCCTCTGCCCTTTGCCCTTTGCCCCTCCCAGGCCCAGCTCTGGAACTTTCATGCCGGTTCCTGTCAGCACAGAGCCAAGGT
...................................................(((((...(((((((.(((((.(((....(((((((......)))))))....))).)))))..)))...((.....))....))))..)))))...................................................
..................................................51.............................................................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesWT4()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjTestesWT3()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR014235(GSM319959)
2 dpp total. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553586(SRX182792)
source: Testis. (testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjLiverWT1()
Liver Data. (liver)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR206940(GSM723281)
other. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR037937(GSM510475)
293cand2. (cell line)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM475281(GSM475281)
total RNA. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR065050(SRR065050)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR073955(GSM629281)
total RNA. (blood)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
..........................................................................................................................CCCTTTGCCCTTTGCCCC........................................................ 1841.501.50--------------------------------------------------------------------------------------------0.250.25--------0.50------------------------------------0.50------
.......................................................................................................................CTGCCCTTTGCCCTTTGCCCC........................................................ 2121.501.50------------------------------------------------------------------------------------------------------0.50-------------------------------------0.500.50----
............................................................................................................................................TCCCAGGCCCAGCTCACA...................................... 181.000.00--------------------------------------------------------1.00-----------------------------------------------------------------------------------------
..........................................TGCAGCAGGTGGGACGCCA....................................................................................................................................... 191.000.00--------------------------------------------------------------------------------------------------------------------------------1.00-----------------
......................................................................................................................TCTGCCCTTTGCCCTTTGCCCCTTT..................................................... 251.000.00-----------------------------------------------------------------------------------1.00--------------------------------------------------------------
.........................................................................................................................GCCCTTTGCCCTTTGCCCC........................................................ 1940.500.50-------------------------------------------------------------------------------------------------------------------------------------------0.25--0.25---
...........................................................................................................................CCTTTGCCCTTTGCCCC........................................................ 1780.380.38--------------------------------0.12-------0.25---------------------------------------------------------------------------------------------------------
.......................................................................................................................CTGCCCTTTGCCCTTTGCCC......................................................... 2040.250.25--------------------------------------------------------------------------------------------0.25-----------------------------------------------------
.......................................................................................................................................GCCCCTCCCAGGCCCA............................................. 1680.120.12------------------------------------------------------------------------------------------------------------------------------------------------0.12-