ID: uc007apf.10
GENE: mKIAA1112(10)
chr1:34867731-34867980+


(2)
AGO1.ip 		(14)
AGO2.ip 		(2)
AGO3.ip 		(2)
B-CELL 		(30)
BRAIN 		(1)
CELL-LINE 		(2)
DGCR8.mut 		(3)
EMBRYO 		(4)
ESC 		(2)
LIVER 		(2)
LYMPH 		(4)
OTHER 		(1)
OTHER.mut 		(1)
OVARY 		(2)
PIWI.ip 		(4)
SKIN 		(2)
SPLEEN 		(6)
TESTES 		(1)
UTERUS

Sense strand
TGGCTCAGGGAGCTTCGTTCTCTCCCTTGGCTGGCAAGACAGAATGGATGAGCAGGTGAGGGAAGTCCCTGCCATGCCAGGCTGTCTCAAGCGTGATAGGAATGGGGCACAGGAGGATAGCACCTGGACTAGAAAGCCCTCCAGGGAGGCACATGAGCAGCTGAAGGCAAGGTGGGGTCTCACATGTGTCCTTCCTCCAGGCTTCTCCATCACCGAGCTGCAGAGGAAGCAGGCCATGCTGAACGCCAGC
..............................................................................................................................................(((((((((((((......((.((((........)))))))))))).)))))))......................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR206941(GSM723282)
other. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM640577(GSM640577)
small RNA in the liver with paternal control . (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR014234(GSM319958)
Ovary total. (ovary)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
...........................................................................................................................................TCCAGGGAGGCACATGAGCAGC.........................................................................................22119.0019.003.003.00-1.00-2.001.00-2.00-1.001.00-1.00------1.00---------1.00----------1.00---------1.00----------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAG..........................................................................................21119.0019.007.00-1.002.00--------1.00-1.00-------1.00---1.00------1.00---1.00------------1.00--1.00------1.00-
..................................................................................................................................................................................CTCACATGTGTCCTTCCTCCAG..................................................2218.008.00-2.00--1.00-1.00----1.00----------------------1.00-------1.00-------------1.00-----
.................................................................................................................................................................................TCTCACATGTGTCCTTCCTCCA...................................................2215.005.00------1.00---1.00-----------1.00--1.00--------------------------1.00---------
...........................................................................................................................................TCCAGGGAGGCACATGAGC............................................................................................1914.004.00--1.00-----------2.00----------------1.00------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGA............................................................................................193.000.002.00--------------1.00----------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAA..........................................................................................2113.001.00--------1.00--------------1.00--------1.00-----------------------------
..................................................................................................................................................................................CTCACATGTGTCCTTCCTCCAGA.................................................2312.008.00-----1.00--------------1.00-----------------------------------------
............................................................................................................................................CCAGGGAGGCACATGAGCAG..........................................................................................2012.002.00--1.00------------------1.00----------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAGT.........................................................................................2212.0019.00---1.00-------------------------------------------1.00--------------
.................................................................................................................................................................................TCTCACATGTGTCCTTCCTCCAGT.................................................2412.001.00----1.00----------------------------------------1.00----------------
................................................................................................................................................GGAGGCACATGAGCAGCTGAAGGCAAGGTGGG..........................................................................3212.002.00-------------------2.00------------------------------------------
...................................................................................................................................................................................TCACATGTGTCCTTCCTCCAGT.................................................222.000.001.00-1.00-----------------------------------------------------------
................................................................................................................................................................................................................................GGAAGCAGGCCATGCTGAACGCCA..2411.001.00-----------------------------1.00--------------------------------
.............................................................................................................................................................................................................TCCATCACCGAGCTGCAGAGGAAGCA...................2611.001.00---------1.00----------------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAGCTAT......................................................................................251.000.00------------------------------------1.00-------------------------
...................................AAGACAGAATGGATGAGCAG...................................................................................................................................................................................................2011.001.00------------------------1.00-------------------------------------
...........................................................................................................................................................................................................................GCAGAGGAAGCAGGCCATGCTGAACGT....271.000.00---------1.00----------------------------------------------------
.................................................................................................................................................................................TCTCACATGTGTCCTTCCTCTAGT.................................................241.000.00----1.00---------------------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAGCA........................................................................................2311.0019.001.00-------------------------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAAA.........................................................................................2211.001.00------------1.00-------------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAT..........................................................................................2111.001.00----------------------------------------------1.00---------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCA...........................................................................................2011.001.00--1.00-----------------------------------------------------------
...................................................................................................................................................................................................................ACCGAGCTGCAGAGGAAGC....................1911.001.00---------------------------------------1.00----------------------
.............................................................................................................................................CAGGGAGGCACATGAGCAGCT........................................................................................2111.001.00---------------1.00----------------------------------------------
..................................................................................................................................................................................................................CACCGAGCTGCAGAGGAA......................1811.001.00-------------------------------------------1.00------------------
.................................................................................................................................................................................TCTCACATGTGTCCTTCCTCC....................................................2111.001.00-----------1.00--------------------------------------------------
.................................................................................................................................................................................TCTCACATGTGTCCTTCCTCCAG..................................................2311.001.00-------------------------------------------------------1.00------
............................................................................................................................................CCAGGGAGGCACATGAGCAGCAA.......................................................................................231.000.00----------------1.00---------------------------------------------
..................................................................................................................................................................................CTCACATGTGTCCTTCCTCCA...................................................2111.001.00----1.00---------------------------------------------------------
..........................TTGGCTGGCAAGACAGAATGGATGAGCA....................................................................................................................................................................................................2811.001.00------------------1.00-------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGT............................................................................................191.000.00------------1.00-------------------------------------------------
............................GGCTGGCAAGACAGAACT............................................................................................................................................................................................................181.000.00------------------------------------------------1.00-------------
..........................................................................................................................................................................................................TTCTCCATCACCGAGCTGCAGAGGAAGC....................2811.001.00---------1.00----------------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAGA.........................................................................................2211.0019.00---------------------1.00----------------------------------------
...................................AAGACAGAATGGATGAGCAGGT.................................................................................................................................................................................................2211.001.00-----------------------------------1.00--------------------------
...........................TGGCTGGCAAGACAGAATGGATGAGCAG...................................................................................................................................................................................................2811.001.00------------------1.00-------------------------------------------
...........................................................................................................................................TCCAGGGAGGCACATGAGCAGCTT.......................................................................................241.000.00--------------------------------------1.00-----------------------
..................................................................................................................................................................................CTCACATGTGTCCTTCCTCC....................................................2011.001.00----------1.00---------------------------------------------------
.....................................................................................................................................................................................................................................CAGGCCATGCTGAACG.....1650.800.80-----------------------0.80--------------------------------------
........................................................................................AAGCGTGATAGGA.....................................................................................................................................................1390.110.11-------------------------------------------------------------0.11

Antisense strand
TGGCTCAGGGAGCTTCGTTCTCTCCCTTGGCTGGCAAGACAGAATGGATGAGCAGGTGAGGGAAGTCCCTGCCATGCCAGGCTGTCTCAAGCGTGATAGGAATGGGGCACAGGAGGATAGCACCTGGACTAGAAAGCCCTCCAGGGAGGCACATGAGCAGCTGAAGGCAAGGTGGGGTCTCACATGTGTCCTTCCTCCAGGCTTCTCCATCACCGAGCTGCAGAGGAAGCAGGCCATGCTGAACGCCAGC
..............................................................................................................................................(((((((((((((......((.((((........)))))))))))).)))))))......................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR206941(GSM723282)
other. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM640577(GSM640577)
small RNA in the liver with paternal control . (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR014234(GSM319958)
Ovary total. (ovary)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
..............................................................................................................................................AGGGAGGCACATGAGCAGCTGAAGGCA................................................................................. 2712.002.00-------2.00------------------------------------------------------
...........................................................................................CGTGATAGGAATGGGGAA............................................................................................................................................. 182.000.00-------------1.00---------------------------------------------1.00--
.....................................................................................................................................................................................................CAGGCTTCTCCATCACCGAGCTGCA............................ 2511.001.00-----------------1.00--------------------------------------------
..................................................................................................................................................................................................................CACCGAGCTGCAGAGGAGGGG................... 211.000.00------------------------------------------------------1.00-------
...........................................................................................CGTGATAGGAATGGGAA.............................................................................................................................................. 171.000.00-------------1.00------------------------------------------------
...............................................................................................................GGAGGATAGCACCTGGACTAGAACCT................................................................................................................. 261.000.00----------------------------------------------------------1.00---
................................................................................................................................................GGAGGCACATGAGCAGCTGAAGGCA................................................................................. 2511.001.00-------1.00------------------------------------------------------
........................................................................................................................................................................................................GCTTCTCCATCACCGAGCTGCA............................ 2211.001.00-----------------1.00--------------------------------------------
..............................................................................................................................................................................................................CCATCACCGAGCTGCCG........................... 171.000.001.00-------------------------------------------------------------
..........................................................................................................................................................................................TGTCCTTCCTCCAGGCGA.............................................. 181.000.00----------------------------1.00---------------------------------
.................................................................TCCCTGCCATGCCAGGCTGTCTCAAG............................................................................................................................................................... 2611.001.00-------------------------------------------------1.00------------
....................................................................CTGCCATGCCAGGCTGTCTCAA................................................................................................................................................................ 221.000.00----------------1.00---------------------------------------------
.............TTCGTTCTCTCCCTTGG............................................................................................................................................................................................................................ 1711.001.00--------------------------------------------1.00-----------------
.......................................................................................................................................GCCCTCCAGGGAGGCACATGAGCAGCTGA...................................................................................... 2911.001.00---------------------------------------------------------1.00----
.................................................................TCCCTGCCATGCCAGGCTGTCTCAA................................................................................................................................................................ 2511.001.00----------------------------------------1.00---------------------
..........................................................................TGCCAGGCTGTCTCAAGC.............................................................................................................................................................. 1811.001.00---------------------------1.00----------------------------------