ID: mmu-mir-7092
GENE: D0HXS9928E(3)
chrX:71562569-71562818+


(1)
AGO.mut
(5)
AGO2.ip
(12)
B-CELL
(25)
BRAIN
(5)
CELL-LINE
(2)
DCR.mut
(2)
DGCR8.mut
(10)
EMBRYO
(11)
ESC
(4)
FIBROBLAST
(4)
HEART
(2)
KIDNEY
(10)
LIVER
(3)
LYMPH
(10)
OTHER
(9)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(5)
SPLEEN
(27)
TESTES
(1)
THYMUS
(6)
TOTAL-RNA
(1)
UTERUS

Sense strand
ATCATTTTCAGGCCAGGCATGTTGGTACACTGATTTTAGGACTTGAGAGGCAGAGGCAGGCAGATCTCTCTGAGTTTGAGCCCACCCTGCTCTACATAGAGAATTACATCCAGGGCTACATAAACGTGATTATGTCTAAAGGCAAACTCACAGAATCATTTTCTGAAAAAATAAAATGTTCTTTGTTTTGTTTGCCTTAGAGATCACCACAAAGAAAAAGAAATTGGGGAAGAACCCTGATGTGGACACA
..........................................................................................................................................(((((((((...(((((.....)))))..((((((((......)))))))))))))))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR206941(GSM723282)
other. (brain)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR073954(GSM629280)
total RNA. (blood)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR553584(SRX182790)
source: Heart. (Heart)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR206940(GSM723281)
other. (brain)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR206939(GSM723280)
other. (brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR206942(GSM723283)
other. (brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
mjLiverWT3()
Liver Data. (liver)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
mjTestesWT3()
Testes Data. (testes)
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAG..................................................241102.00102.0022.009.008.00-2.008.004.006.00--2.004.004.00--3.00--4.003.00--2.00---1.00-1.001.002.001.00--2.001.00---2.00---------2.00-1.00-1.00-------1.00-1.002.00-----------------1.00----------------------------------------------1.00------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAGT.................................................25146.00102.004.00------1.00--1.00-1.008.00-----1.00-4.00---5.00-1.002.00-1.00------2.00-1.002.00-1.00-1.00------------------1.00--1.00-----1.00-----------------1.00----1.001.001.00-------------1.00-----1.00------1.00-----------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTTAG..................................................25143.0043.0010.004.002.00-4.006.00----1.003.001.00------1.00--------------1.00--------2.00---------1.00-----------------1.00---------------------1.00----1.00-1.00-1.00-----------------1.00-----1.00---------
........................................................................................................................................TAAAGGCAAACTCACAGAATCAT...........................................................................................23134.0034.00-2.001.00-3.00----3.001.00-1.00-1.001.00----1.00------2.00-2.00-2.00------1.00---------------2.00--1.00------------1.00-----1.00--1.00-----1.00-----------------1.00-1.00-------1.00-------1.001.00-----1.00-------
.........................................................................................................................................AAAGGCAAACTCACAGAATCATT..........................................................................................23131.0031.00-2.00-------1.00----1.00-------1.00----2.00-----2.00--2.00--------1.002.002.002.00-1.002.00---1.001.00----------1.00-1.00------------------1.00---------------------1.00---1.001.00---1.00----------1.00-----
.........................................................................................................................................AAAGGCAAACTCACAGAATCAT...........................................................................................22122.0022.00----1.00----1.00----1.00-----4.00---3.00-------------1.00------1.00----2.00-----1.00--1.00--------------1.00---1.00----1.00--1.00------------------------------------1.00-1.00----------
........................................................................................................................................TAAAGGCAAACTCACAGAATCATT..........................................................................................24118.0018.00--2.00-1.00----1.00-1.00--2.00-----1.00-1.00--------1.00----1.001.001.00-----1.00--1.00--------------------------1.00-1.00---------------1.00-------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAGA.................................................25116.0016.00----------2.00----2.00-------3.00-1.00--1.00-----1.001.00-----------------------------------1.00---------1.00----------------------1.00----1.00------1.00-------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATCA............................................................................................22114.0014.00---------3.00----1.00---2.00--------------------------1.00--1.00---1.00-------------------1.00--1.00-2.00-----------------------1.00----------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATC.............................................................................................21111.0011.00--2.00-2.00--1.00--1.00-1.00--1.00-------------2.00-----------------------------1.00----------------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATCATTTTCTGT....................................................................................308.000.00----------------8.00-----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCC......................................................2217.007.006.00----------------------1.00----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCCTTAG..................................................2617.007.00-1.00--1.001.00-1.00-----------1.00-----------------------------------------1.00-------------1.00------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAAT..............................................................................................2017.007.00--------------1.00---------1.00--------2.00--------------------------1.00------1.00-----1.00--------------------------------------------------------------
..................................................................................................................................................................................TTCTTTGTTTTGTTTGCCTTAG..................................................2216.006.00------6.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTT....................................................2215.005.00------2.002.00--------------------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTA...................................................2315.005.00------2.00---------------1.00-----------------1.00-------------------------1.00---------------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCA............................................................................................2114.004.00--------------------1.00---2.00---------------------------------------------------------------------------------1.00-----------------------------
......................................................................................................................................TCTAAAGGCAAACTCACAGAAT..............................................................................................2213.003.00---------------------1.001.00------------------------------------------------------------------------------------------------------------1.00----
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTAA...................................................243.000.00-----------------------------------1.00------1.00---------------------------1.00-----------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATC.............................................................................................2013.003.00----1.00----------------------------------------------------------------1.00----------1.00-------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAT..................................................2413.005.001.002.00--------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGC.......................................................1922.502.50-------------------1.00-1.50------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCT.....................................................2112.002.00-------1.00--1.00-----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAAAA................................................2612.005.00-----------------------2.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................AAGGCAAACTCACAGAATCAT...........................................................................................2112.002.00----1.00--------------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTTAGA.................................................2612.002.00---------------1.00---------------------------------------------------------------------------------------------------------------1.00--------
........................................................................................................................................TAAAGGCAAACTCACAGAATCATTT.........................................................................................2512.002.00------------------------------2.00---------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CCACAAAGAAAAAGAAGGA.........................192.000.00----------------------------------------------------------2.00-----------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGGCAATA.............................................................................................................................................................................................252.000.00-----------------------------------------------------------------1.00--1.00-------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAA...............................................................................................1912.002.00---------------------------------------------------------1.00--------------------------1.00---------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCATTTT........................................................................................2512.002.00-------------------------------------------------------1.00----1.00---------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCCT.....................................................2311.001.00---------------------------------------------------------------------------------------------------1.00------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATAATT..........................................................................................2411.007.00-------------------------------------------1.00--------------------------------------------------------------------------------------------
......................................................................................................................................TCTAAAGGCAAACTCACAGAATC.............................................................................................2311.001.00---------1.00------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAAGCA............................................................................................211.000.00----------------------------------------------------------------------------------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................................AAGAACCCTGATGTGGACAC.2011.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAC..................................................2411.005.00------1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTCAGA.................................................2511.002.00-------------------------------------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCCTT....................................................2411.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CCACAAAGAAAAAGAAGAGT........................201.000.00------------------1.00---------------------------------------------------------------------------------------------------------------------
............................ACTGATTTTAGGACTTGAGAGGCAGAGG..................................................................................................................................................................................................2811.001.00--------------------------------------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTCG..................................................2411.005.00-----------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCC......................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................GCCTTAGAGATCACCATG.......................................181.000.00-------------------------------------------------------------------------------1.00--------------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTTAA..................................................251.000.00------------------------------------------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTGAGT.................................................2511.002.00-----------------------------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................GTCTAAAGGCAAACTCACAGAA...............................................................................................2211.001.00----------------------------------------------1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGGGAAGAACCCTGATGTGGACA..2311.001.00-----------------------------------------------------------------------------------------1.00----------------------------------------------
....................................................................................................................................................................................CTTTGTTTTGTTTGCCTTAGTA................................................221.000.00----------------------------------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................TTCTTTGTTTTGTTTGCCTTAGAGT...............................................251.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGGCAGAA.............................................................................................................................................................................................251.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCATA..........................................................................................2311.0022.00------------------------------------------------------------------------------1.00---------------------------------------------------------
..........................................................................................................................................AAGGCAAACTCACAGAATCATT..........................................................................................2211.001.00--------------------------------------------------------------------------------1.00-------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAAC..............................................................................................2011.002.00-------------------------------------------------------------------------1.00--------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGC.......................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................AAGGCAAACTCACAGAATCA............................................................................................2011.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTCTTTGTTTTGTTTGCCTTAGT.................................................241.000.00-------------------------------------------------------------------------------------------1.00--------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTT....................................................2311.001.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
...............GGCATGTTGGTACACTG..........................................................................................................................................................................................................................1711.001.00------------------------------------------------------------------------------------------------------------1.00---------------------------
........................................................................................................................................TAAAGGCAAACTCACAGA................................................................................................1820.500.50------------------------------------------------------------------------------------------------------------------------------------0.50---
..........................................................................................................................................AAGGCAAACTCACAGAAT..............................................................................................1820.500.50---------------------------0.50------------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGGCAGG..............................................................................................................................................................................................2430.330.33--------------------------0.33-------------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAG...................................................................................................................................................................................................1950.200.20--------------------------0.20-------------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGG..................................................................................................................................................................................................2050.200.20-------------------------------------------------------------------------------------------------------------------------------------0.20--
....................................TAGGACTTGAGAGGCAGA....................................................................................................................................................................................................1860.170.17---------------------------------------------------------------------------------------------------------------------------------------0.17
........................................................................................................................................TAAAGGCAAACTCACA..................................................................................................1680.120.12----------------------------------------------------0.12-----------------------------------------------------------------------------------

Antisense strand
ATCATTTTCAGGCCAGGCATGTTGGTACACTGATTTTAGGACTTGAGAGGCAGAGGCAGGCAGATCTCTCTGAGTTTGAGCCCACCCTGCTCTACATAGAGAATTACATCCAGGGCTACATAAACGTGATTATGTCTAAAGGCAAACTCACAGAATCATTTTCTGAAAAAATAAAATGTTCTTTGTTTTGTTTGCCTTAGAGATCACCACAAAGAAAAAGAAATTGGGGAAGAACCCTGATGTGGACACA
..........................................................................................................................................(((((((((...(((((.....)))))..((((((((......)))))))))))))))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR206941(GSM723282)
other. (brain)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR073954(GSM629280)
total RNA. (blood)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR553584(SRX182790)
source: Heart. (Heart)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR206940(GSM723281)
other. (brain)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR206939(GSM723280)
other. (brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR206942(GSM723283)
other. (brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
mjLiverWT3()
Liver Data. (liver)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
mjTestesWT3()
Testes Data. (testes)
.....................................................................................CCTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 27123.0023.00---11.00----6.00--------2.00--------------2.00--------------------------------1.00---------------------1.00------------------------------------------------
....................................................................................CCCTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 2814.004.00---1.00-------------1.00--------------2.00-------------------------------------------------------------------------------------------------------
..................................................................................CACCCTGCTCTACATAGAGAATTACA.............................................................................................................................................. 2612.002.00---1.00----1.00-------------------------------------------------------------------------------------------------------------------------------
.............................................................................GAGCCCACCCTGCTCTACATAGAGAATTA................................................................................................................................................ 2912.002.00---1.00----1.00-------------------------------------------------------------------------------------------------------------------------------
............................................................................TGAGCCCACCCTGCTCTACATAGAGAA................................................................................................................................................... 2712.002.00-----------------2.00----------------------------------------------------------------------------------------------------------------------
...............GGCATGTTGGTACACTGATTTTAGGACTTG............................................................................................................................................................................................................. 3012.002.00--------------------------------------------------------------2.00-------------------------------------------------------------------------
..............................................................................................................CAGGGCTACATAAACGTGATTATGTCTAAA.............................................................................................................. 301.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
..........................................................................TTTGAGCCCACCCTGCTCTACATAGAGA.................................................................................................................................................... 2811.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................................GCTCTACATAGAGAATTACATCCAGGGCTA.................................................................................................................................... 3011.001.00-----------------------------------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................GCCTTAGAGATCACCACAAAGAAAAA............................... 2611.001.00-----------------------------------------1.00----------------------------------------------------------------------------------------------
....................................................................................CCCTGCTCTACATAGAGAATTACATCCAG......................................................................................................................................... 2911.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------
..........................................................................TTTGAGCCCACCCTGCTCTACATAGA...................................................................................................................................................... 2611.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................GCCCACCCTGCTCTACATAGAGAATTA................................................................................................................................................ 2711.001.00---1.00------------------------------------------------------------------------------------------------------------------------------------
......................................................................................CTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 2611.001.00--------------------------------1.00-------------------------------------------------------------------------------------------------------
.................................................................................CCACCCTGCTCTACATAGAGAATTACA.............................................................................................................................................. 2711.001.00---1.00------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGCAGGCAGATCTCTCTGAGGAA............................................................................................................................................................................. 251.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------------
..................................................................................CACCCTGCTCTACATAGAGAATTACATC............................................................................................................................................ 2811.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------
...................................................................................ACCCTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 2911.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GGAAGAACCCTGATGAGT..... 181.000.00----------------------------------------------------------------------------------------------------------------1.00-----------------------
...............................................................................................................................................................................................................CACAAAGAAAAAGAAA........................... 161.000.00----------------------------------------------------------------------------------------------------------------------1.00-----------------
.............................................................................GAGCCCACCCTGCTCTACGAG........................................................................................................................................................ 211.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
..........GGCCAGGCATGTTGGTACACTGATTTTA.................................................................................................................................................................................................................... 2811.001.00-----------------------------------------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TGTTTTGTTTGCCTTAGAGATCACCACAAA..................................... 3011.001.00-----------------------------------------------------------------------------------------------------------1.00----------------------------
.............................................................AGATCTCTCTGAGTTTGAGCC........................................................................................................................................................................ 2140.250.25----------------------0.25-----------------------------------------------------------------------------------------------------------------
..................................................................TCTCTGAGTTTGAGCCCAC..................................................................................................................................................................... 1950.200.20---------------------------------------------------------------------------------0.20------------------------------------------------------
...................................................................CTCTGAGTTTGAGCCCAC..................................................................................................................................................................... 1850.200.20--------------------------------------------------------------------------------------------------------------------------------------0.20-