ID: mmu-mir-7045
GENE: Chd4
chr6:125046905-125047154+


(1)
AGO.mut
(2)
AGO1.ip
(14)
AGO2.ip
(2)
AGO3.ip
(10)
B-CELL
(31)
BRAIN
(3)
CELL-LINE
(1)
DCR.mut
(1)
DGCR8.mut
(11)
EMBRYO
(2)
ESC
(2)
FIBROBLAST
(2)
KIDNEY
(4)
LIVER
(1)
LUNG
(2)
LYMPH
(9)
OTHER
(9)
OTHER.mut
(1)
PIWI.ip
(1)
PIWI.mut
(5)
SKIN
(4)
SPLEEN
(16)
TESTES
(3)
THYMUS
(5)
TOTAL-RNA
(1)
UTERUS

Sense strand
TGCCCTCGGGGGCGTCATTCCCTCTTCTTGGGGGCTCCTGCTGGGGAGCCGGCTCACGGGCTGTCCCCGAGGAGTGTGGAACTAAGTTCAGCCTGAGTGGTTCGGGTGCTTGGCTAGGGTGGTAGGGCAGGGGGGCGGAAAGAGCGGGTGGGGGAGGGGGACTGCGCGTCACTCACTGTTCTCCCCCCTCCCCCGCACAGTGACTCGGGCCAGTGCAGAGGGCCCCAGGCCGCAGGCAGGAGCAGCTGGG
...................................................................................................................................................(((((((((((((...(((.((.....)))))....)))))))))))))......................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR306526(GSM750569)
19-24nt. (ago2 brain)
SRR206941(GSM723282)
other. (brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR206940(GSM723281)
other. (brain)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR073955(GSM629281)
total RNA. (blood)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
GSM416732(GSM416732)
MEF. (cell line)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGT.................................................22157.0057.009.004.004.001.006.002.002.004.00----2.00-1.00---1.00-1.00-1.00----2.001.00-2.001.00--2.00-1.00---2.00---1.00--1.00-1.00-------------------------1.00------1.00-----1.00------1.00-1.00-------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGA.................................................22113.009.00--1.00---1.00------------------1.001.00-1.00-------------------------1.00-1.00------1.00---------1.00------1.00------1.00--------------1.001.00-------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAG..................................................2119.009.002.003.00-----------------1.00-1.00-------------------2.00---------------------------------------------------------------------
..............................................................................................................................................AGCGGGTGGGGGAGGGGGACTGT.....................................................................................236.000.002.00--------------------1.00---------------1.00-1.00------1.00----------------------------------------------------------------
....................................................................................................................................................................................CTCCCCCCTCCCCCGCACAGT.................................................2114.004.00-1.00---2.00-------------------------------------------------------------1.00-------------------------------------------
..........................................................................................................................................................................................................ACTCGGGCCAGTGCAGAG..............................1813.003.00---------2.00-----------------------------------------------------------------------------------1.00-----------------
............................................................................................................................................................................................................TCGGGCCAGTGCAGAGGG............................1813.003.00----------3.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGTT................................................2313.0057.00--1.00-------------1.00----------------------------1.00-----------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACA...................................................2022.002.00-0.50------------------0.50------------------------0.500.50----------------------------------------------------------------
..................................................................................................................................................................................TTCTCCCCCCTCCCCCGCACAG..................................................2212.002.00--1.00-------------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTGACTCGGGCCAGTGCAGAG..............................2112.002.00-----------------------------1.00---------------------------------------------------1.00-----------------------------
...................................................................................................................................................GTGGGGGAGGGGGACTGC.....................................................................................1822.002.00------------------------------------------0.500.50-------------------------------------------------------------0.50---0.50-
........................................................................................................................................................................................................................................CAGGCAGGAGCAGCTGGG1812.002.00--------------------------------------2.00------------------------------------------------------------------------
.................................................................................................................................................................................GTTCTCCCCCCTCCCCCGCAC....................................................2112.002.00---------------------------------2.00-----------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGGCCGCAGGCAGGAGCAG.....1912.002.00-------------------------------------------------------------------------------------1.00----1.00--------------------
.................................................................................................................................................................................GTTCTCCCCCCTCCCCCGCACAGT.................................................2412.002.00--------------------------------------------------------------------1.00------------------------------1.00-----------
................................................................................................................................................CGGGTGGGGGAGGGGGACTGC.....................................................................................2112.002.001.00-----------------------------------------1.00--------------------------------------------------------------------
..............................................................................................................................................AGCGGGTGGGGGAGGGGGACTGA.....................................................................................232.000.00---------------------------------------------------------------------1.00----------------1.00------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGC.................................................2212.009.00--1.00---1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................AGCGGGTGGGGGAGGGGGACT.......................................................................................2112.002.00------------------------------------------------------------------------------1.00-----1.00--------------------------
..................................................................CCGAGGAGTGTGGAACTAAGTTCAGCCTGAGTGGT.....................................................................................................................................................3511.001.00-----------------------------------------------------------------------1.00---------------------------------------
.....................................................................AGGAGTGTGGAACTAAG....................................................................................................................................................................1711.001.00------------------------------------------------------------1.00--------------------------------------------------
................................................................................................................................................................................................................GCCAGTGCAGAGGGCTGT........................181.000.00-----------1.00---------------------------------------------------------------------------------------------------
......................................................CACGGGCTGTCCCCGAGGAGTGTGGAAT........................................................................................................................................................................281.000.00------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GCCGCAGGCAGGAGCAGC....1811.001.00-----------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCAAGCT.................................................221.000.00------------------------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................GGCCGCAGGCAGGAGCAGC....1911.001.00----------------------------------------------------------------------------------------------------1.00----------
.............................................................................................................TTGGCTAGGGTGGTAGGGC..........................................................................................................................1911.001.00---1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGTAT...............................................2411.0057.001.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTCTCCCCCCTCCCCCGCACA...................................................2211.001.00-----------------------------------1.00---------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGGAT...............................................2411.009.001.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................AGCGGGTGGGGGAGGGGGGCTG......................................................................................221.000.00-------------------------------------------------------1.00-------------------------------------------------------
..................................................................................................................................GGGGGCGGAAAGAGCGGGTG....................................................................................................2011.001.00--------------------------------1.00------------------------------------------------------------------------------
...................................................................................................................................................................................................................AGTGCAGAGGGCCCCAGGCCGCAGG..............2511.001.00-----------------------------------------------------------------------------------1.00---------------------------
.....................................................................................................................................................GGGGGAGGGGGACTGCGTA..................................................................................191.000.00---------------1.00-----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CGCAGGCAGGAGCAGCTG..1811.001.00----1.00----------------------------------------------------------------------------------------------------------
.............................................................TGTCCCCGAGGAGTGTGGA..........................................................................................................................................................................1911.001.00---------1.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTCCCCCCTCCCCCGCACAG..................................................2011.001.00--------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................................................................TCCCCCGCACAGTGACTCGGGCCAGTG...................................2711.001.00---1.00-----------------------------------------------------------------------------------------------------------
............................................................................................................................................................GGGGACTGCGCGTCA...............................................................................1511.001.00--------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................CAGGGGGGCGGAAAGACATG.......................................................................................................201.000.00-------------------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................TTCTCCCCCCTCCCCCGCACAGT.................................................2311.001.00--1.00------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................GCCCCAGGCCGCAGGCAGGA.........2011.001.00---1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACT...................................................2021.000.50------0.50-----0.50--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACTT..................................................2121.000.500.500.50-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCCCTA..................................................211.000.00-1.00-------------------------------------------------------------------------------------------------------------
.............................................................................................TGAGTGGTTCGGGTGCTTGGCTAG.....................................................................................................................................2411.001.00---------------------------------------------------------1.00-----------------------------------------------------
................................................................................................................................................CGGGTGGGGGAGGGGGACTGA.....................................................................................2111.001.00------------------------------------------------------------------1.00--------------------------------------------
.GCCCTCGGGGGCGTCGGGT......................................................................................................................................................................................................................................191.000.00--------------------------------------------------------------------------1.00------------------------------------
....................................................................................................................................................................................................................GTGCAGAGGGCCCCAGGCCGCA................2211.001.00-------------------------------------------1.00-------------------------------------------------------------------
.....................................................................................................................................................................................TCCCCCCTCCCCCGCACAGT.................................................2011.001.00--------------1.00------------------------------------------------------------------------------------------------
.......................................................................GAGTGTGGAACTAAGTTTA................................................................................................................................................................191.000.00-------------------------------------------------------------------------------------------1.00-------------------
.....................................................TCACGGGCTGTCCCCGAGGAGTGTG............................................................................................................................................................................2511.001.00----------------------------------------------------------------1.00----------------------------------------------
..............................................................................................................................................................................ACTGTTCTCCCCCCTCCCCCGCACAGT.................................................2711.001.00--------------------------------------------------------------1.00------------------------------------------------
................................................................................................................................................CGGGTGGGGGAGGGGGACTG......................................................................................2011.001.001.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GGCCGCAGGCAGGAGCAGCTG..2111.001.00-------------------------------------1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CCGCAGGCAGGAGCAGCTGG.2011.001.00--------------------------------------------------1.00------------------------------------------------------------
.......................................................................................................................................................................................................................CAGAGGGCCCCAGGCCGCAGGCAGGGG........271.000.00-----------------------------------------------------------------------------1.00---------------------------------
......CGGGGGCGTCATTCCCTCTTCTTGGGGGCT......................................................................................................................................................................................................................3011.001.00----------------------------------------------------------------------1.00----------------------------------------
..........................................................................................................................................................................ACTCACTGTTCTCCCCCCTCCCCCGC......................................................2611.001.00-------------------1.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCGCGT..................................................211.000.00--1.00------------------------------------------------------------------------------------------------------------
.....................................................................................................................................GGCGGAAAGAGCGGGT.....................................................................................................1611.001.00--------1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GAGGGCCCCAGGCCGCAA...............181.000.00--------------------------------------------------------------------------------------------------------1.00------
....................................................................................................................................................TGGGGGAGGGGGACTGCGCGTC................................................................................2211.001.00---------------------------------------1.00-----------------------------------------------------------------------
............................................................................................................................................AGAGCGGGTGGGGGAGGGGG..........................................................................................2011.001.00-------------------------1.00-------------------------------------------------------------------------------------
....................................................................................................................................................................................CTCCCCCCTCCCCCGCATT...................................................191.000.00----------------------1.00----------------------------------------------------------------------------------------
.......................................................ACGGGCTGTCCCCGAGGAGTGTGGAACT.......................................................................................................................................................................2811.001.00---1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGTAA...............................................2411.0057.00-----------------------------------------------------------------------------------------1.00---------------------
.................................................................................................................CTAGGGTGGTAGGGCAGGGGGGCG.................................................................................................................2411.001.00-----------------------------1.00---------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GCAGGCAGGAGCAGCTGGGCA211.000.00-----------------------------------------------------1.00---------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGTGA...............................................2411.001.00-----------------------------------------------------------1.00---------------------------------------------------
.........................................................GGGCTGTCCCCGAGGAGTGTGGAAC........................................................................................................................................................................2511.001.00------------------------------------------------------------------------------------------------1.00--------------
......................................................................................................................................................................................CCCCCCTCCCCCGCACAGAT................................................201.000.00-1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................TCGGGTGCTTGGCTAGGGTGG................................................................................................................................2111.001.00------------------------1.00--------------------------------------------------------------------------------------
..................................................................................................................................................................TGCGCGTCACTCACTGTTCTCCCCCCTCCCCC........................................................3211.001.00--------------------------------------------------------------------------------------------------1.00------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACAGAT................................................2311.009.001.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACCG..................................................2120.500.50--0.50------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACCGAT................................................2320.500.50----------------------------------------------------------------------------------------------------------0.50----
..................................................................................................................................................................................................GCACAGTGACTCGGGC........................................1620.500.50--------0.50------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................GCACAGTGACTCGGGCTCT.....................................1920.500.50-----------0.50---------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACCGT.................................................2220.500.50-----0.50---------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCAC....................................................1920.500.50--------------------0.50------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACTTTT................................................2320.500.50---0.50-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACCGC.................................................2220.500.50------------------------------------------------------------------------------------------------------------0.50--
...................................................................................................................................................................................TCTCCCCCCTCCCCCGCACCCGT................................................2320.500.50--------------------------------------------0.50------------------------------------------------------------------
.................................................................................................................................................GGGTGGGGGAGGGGGACT.......................................................................................1850.400.40--------------------------------------------------------------------------------------------------------------0.40
.....................................................................AGGAGTGTGGAACTA......................................................................................................................................................................1550.200.20-------------0.20-------------------------------------------------------------------------------------------------

Antisense strand
TGCCCTCGGGGGCGTCATTCCCTCTTCTTGGGGGCTCCTGCTGGGGAGCCGGCTCACGGGCTGTCCCCGAGGAGTGTGGAACTAAGTTCAGCCTGAGTGGTTCGGGTGCTTGGCTAGGGTGGTAGGGCAGGGGGGCGGAAAGAGCGGGTGGGGGAGGGGGACTGCGCGTCACTCACTGTTCTCCCCCCTCCCCCGCACAGTGACTCGGGCCAGTGCAGAGGGCCCCAGGCCGCAGGCAGGAGCAGCTGGG
...................................................................................................................................................(((((((((((((...(((.((.....)))))....)))))))))))))......................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR306526(GSM750569)
19-24nt. (ago2 brain)
SRR206941(GSM723282)
other. (brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR206940(GSM723281)
other. (brain)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR073955(GSM629281)
total RNA. (blood)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
GSM416732(GSM416732)
MEF. (cell line)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR073954(GSM629280)
total RNA. (blood)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
...........................................................................................................................................................................CTCACTGTTCTCCCCCCT............................................................. 1812.002.00-----------------------1.00-----------------------------------------------------------------------------1.00---------
......................................................CACGGGCTGTCCCCGAGGA................................................................................................................................................................................. 1912.002.00-----------------1.00----------------------------------1.00----------------------------------------------------------
..............................................................................................GAGTGGTTCGGGTGCTTTT......................................................................................................................................... 191.000.00-------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CTCACTGTTCTCCCCGTG............................................................. 181.000.00--------1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CCCCCCTCCCCCGCACAGTCGA.............................................. 221.000.00-------------------------------------------------------------1.00-------------------------------------------------
...........................................................GCTGTCCCCGAGGAGTGTGGAACTAA..................................................................................................................................................................... 261.000.00--------------------------------------------------------------------------------------------1.00------------------
....................................................................................................................................................................CGCGTCACTCACTGTTCTCCCC................................................................ 2211.001.00-----------------------------------------------------------------1.00---------------------------------------------
......................................................CACGGGCTGTCCCCGAGGAGT............................................................................................................................................................................... 2111.001.00---------------------------------------------------1.00-----------------------------------------------------------
......................................................CACGGGCTGTCCCCGAGGAG................................................................................................................................................................................ 2011.001.00------------------------------------------------1.00--------------------------------------------------------------
...........................................................................GTGGAACTAAGTTCAGCCT............................................................................................................................................................ 1911.001.00------------------1.00--------------------------------------------------------------------------------------------
...........................................GGGAGCCGGCTCACGGGCTGTCCCCG..................................................................................................................................................................................... 2611.001.00-----------------------1.00---------------------------------------------------------------------------------------
.................................................CGGCTCACGGGCTGTCCCCGAGG.................................................................................................................................................................................. 2311.001.00-----------------------------------1.00---------------------------------------------------------------------------
.....................................................TCACGGGCTGTCCCCGAGGAGTG.............................................................................................................................................................................. 2311.001.00-------------------------------------------------------------------------------1.00-------------------------------
.................................................................................CTAAGTTCAGCCTGACGCT...................................................................................................................................................... 191.000.00-----------1.00---------------------------------------------------------------------------------------------------
.................................................................CCCGAGGAGTGTGGAACT....................................................................................................................................................................... 1811.001.00----------------------------------------------------------1.00----------------------------------------------------
...................................................................................AAGTTCAGCCTGAGTGGT..................................................................................................................................................... 1811.001.00----------------------------------------------------------------------------1.00----------------------------------
..............................................................................GAACTAAGTTCAGCCT............................................................................................................................................................ 1611.001.00------------------------------------------------------------------------1.00--------------------------------------
..........................................................GGCTGTCCCCGAGGAGTGTGGAACT....................................................................................................................................................................... 2511.001.00--------------------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................CCCCGCACAGTGACTAG........................................... 171.000.00-------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CTCGGGCCAGTGCAGGGAC............................ 191.000.00----------------------------------------------------------------------------------------------1.00----------------
...........................................................................................................................................................................................................CTCGGGCCAGTGCAGGGAG............................ 191.000.00---------------1.00-----------------------------------------------------------------------------------------------
................................................CCGGCTCACGGGCTGTCCCCGAGG.................................................................................................................................................................................. 2411.001.00---1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................CCTGAGTGGTTCGGG................................................................................................................................................ 1520.500.50-----------------------------------------------------------------------------------------------------------0.50---
.....................CTCTTCTTGGGGGCTCCT................................................................................................................................................................................................................... 1820.500.50---0.50-----------------------------------------------------------------------------------------------------------