ID: mmu-mir-7040
GENE: Loxl3(9)
chr6:82999591-82999817+


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
B-CELL 		(10)
BRAIN 		(4)
CELL-LINE 		(1)
DCR.mut 		(3)
EMBRYO 		(5)
ESC 		(7)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(12)
OTHER 		(2)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(2)
SPLEEN 		(6)
TESTES 		(1)
TOTAL-RNA 		(3)
UTERUS

Sense strand
CTGCAAGAAGACGGGAACCCGCTTCACTGCGGGGGTCATCTGTTCTGAAAGTGAGTAGTATCAGCTAGAGCTAATTGGAGGGGCTGTGCTGTGATCTGCCTCGAGAGAAGCCAGTCTCCCATACGGAGGGAGATGGAGGCGCCCTCAGTGGTAACCGCCACCCTCTCTCTCACGTAGCTGCTTCAGATCTGCTGCTGCACTCGGCACTGGTACAGGAAACTGCTTAT
.........................................................................................................................((((((((((((.((.((((.((.....))....)))).)).)))))))).))))...................................................
..................................................................................................................115...........................................................177................................................
SizePerfect hitTotal NormPerfect NormSRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM416732(GSM416732)
MEF. (cell line)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR206941(GSM723282)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR306534(GSM750577)
19-24nt. (ago2 brain)
.......................................................................................................................CATACGGAGGGAGATGGAGGCG......................................................................................22145.0045.003.004.007.005.003.002.001.006.00-5.00--1.00---------2.00-1.00---1.00-1.00-------------------1.001.00-------1.00--
........................................................................................................................ATACGGAGGGAGATGGAGGCG......................................................................................21111.0011.001.00-1.00--1.00--1.00-4.00---------1.00---------------------------1.00----1.00--------
...........................................................................................................................................................CGCCACCCTCTCTCTCACGTAGT.................................................2310.000.00---1.002.00----1.00---2.00-----------1.00---1.00------------1.00----1.00--------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCGT.....................................................................................2316.0045.001.00--1.00--1.00-----------------------------1.00----1.00--1.00-----------------
.......................................................................................................................CATACGGAGGGAGATGGAGGC.......................................................................................2116.006.00--4.00-1.00--------------------------------------------1.00------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCGA.....................................................................................2315.0045.001.002.00-1.00-1.00--------------------------------------------------------
............................................................................................................................................................GCCACCCTCTCTCTCACGTAGT.................................................225.000.00--------5.00-----------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGT.....................................................................................2214.0011.001.00--1.00--------------------1.00---------------------1.00---------------
........................................................................................................................ATACGGAGGGAGATGGAG.........................................................................................1813.003.001.002.00------------------------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGGCGT.....................................................................................243.000.00------1.00------------------------1.001.00-----------------------------
.......................................................................................................................CATACGGAGGGAGATGGA..........................................................................................1813.003.001.00--------------------2.00----------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGC.....................................................................................2113.003.00-1.00-1.00--1.00-------------------------------------------------------
....................................................................................................................................................................................................GCACTCGGCACTGGTACAGGAAACT......2513.003.00--------------3.00-----------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCG......................................................................................2012.002.001.00----1.00--------------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGG........................................................................................2012.002.001.00--1.00----------------------------------------------------------
..........................................................................................................................ACGGAGGGAGATGGAGGCGT.....................................................................................202.000.00------2.00-------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGAA......................................................................................212.000.002.00-------------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAA.........................................................................................181.000.001.00-------------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGT.....................................................................................2111.002.001.00-------------------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCGTAA...................................................................................2511.0045.00----------------------------------1.00---------------------------
........................................................................................................................ATACGGAGGGAGATGGAGAAAG.....................................................................................2211.003.00----------------------------------------------------------1.00---
................................................................................................................................................................................................................GGTACAGGAAACTGCG...161.000.00---------------------------1.00----------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGG........................................................................................2111.001.00-1.00------------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGTAA...................................................................................2411.0011.00---------------------------------1.00----------------------------
................................................................................GGGCTGTGCTGTGATAAC.................................................................................................................................181.000.00-----------------1.00--------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCAA.....................................................................................221.000.00-------------------------------------------------------1.00------
.........................................................................................................................TACGGAGGGAGATGGAGGC.......................................................................................1911.001.001.00-------------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGAAA...................................................................................2311.002.001.00-------------------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCAA.....................................................................................2311.006.00----------------------------------------------------1.00---------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCCAT..................................................................................2411.001.00----1.00---------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGA........................................................................................181.000.001.00-------------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGAC....................................................................................2311.0011.00-----1.00--------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGTAAA..................................................................................2411.002.00------------------------------------------------------1.00-------
......................................................GTAGTATCAGCTAGAGCTAATTGGAGGT.................................................................................................................................................281.000.00-------------------------------------1.00------------------------
........AGACGGGAACCCGCTAGAG........................................................................................................................................................................................................191.000.00---------------1.00----------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGTT....................................................................................2211.002.00-1.00------------------------------------------------------------
..........................................................................................................................................GCGCCCTCAGTGGTAACCG......................................................................1911.001.00----------------------------------------1.00---------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGAAT...................................................................................2411.0011.00--------------------------------------------------------1.00-----
.......................TCACTGCGGGGGTCATCTGTTCT.....................................................................................................................................................................................2311.001.00------------1.00-------------------------------------------------
...................................................................................CTGTGCTGTGATCTGCCAGCC...........................................................................................................................211.000.00--------------------------------------1.00-----------------------
................................................................................GGGCTGTGCTGTGATGAAA................................................................................................................................191.000.00-------------------1.00------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGT........................................................................................2111.001.001.00-------------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGTAA...................................................................................2311.002.00-1.00------------------------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAG.........................................................................................2011.001.00-------------------------------------------1.00------------------
........................................................................................................................................................................................................TCGGCACTGGTACAGGAAAC.......2011.001.00--------------------1.00-----------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCAA...................................................................................2311.003.00---1.00----------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCC....................................................................................2211.001.00----1.00---------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCCAA..................................................................................2411.001.001.00-------------------------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGGCGA.....................................................................................241.000.00------1.00-------------------------------------------------------
...........................................................ATCAGCTAGAGCTAATACA.....................................................................................................................................................191.000.00---------------------------------------------------------1.00----
.........................................................................................................................................................................................................CGGCACTGGTACAGGAAACTGCTT..2411.001.00------------1.00-------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGA.....................................................................................2211.0011.00---------------------------------------1.00----------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGA.....................................................................................2111.002.00-----1.00--------------------------------------------------------
.....................CTTCACTGCGGGGGTCATCTGTTCTGA...................................................................................................................................................................................2711.001.00-----------------------------------1.00--------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGAAA.....................................................................................2111.001.00-----1.00--------------------------------------------------------
..........................................................................................................................ACGGAGGGAGATGGAGGCGTT....................................................................................211.000.00--------------------------1.00-----------------------------------
..............................................................................................................................AGGGAGATGGAGGCGGAG...................................................................................181.000.00----------------1.00---------------------------------------------
......................................................................................................................................................................................TCAGATCTGCTGCTGCACTCGGCCC....................251.000.00------------------------------------------------------------1.00-
.........................................................................................................................TACGGAGGGAGATGGAGG........................................................................................1811.001.00----1.00---------------------------------------------------------
...........................................................................................................................................................................ACGTAGCTGCTTCA..........................................1460.170.17---------------0.17----------------------------------------------

Antisense strand
CTGCAAGAAGACGGGAACCCGCTTCACTGCGGGGGTCATCTGTTCTGAAAGTGAGTAGTATCAGCTAGAGCTAATTGGAGGGGCTGTGCTGTGATCTGCCTCGAGAGAAGCCAGTCTCCCATACGGAGGGAGATGGAGGCGCCCTCAGTGGTAACCGCCACCCTCTCTCTCACGTAGCTGCTTCAGATCTGCTGCTGCACTCGGCACTGGTACAGGAAACTGCTTAT
.........................................................................................................................((((((((((((.((.((((.((.....))....)))).)).)))))))).))))...................................................
..................................................................................................................115...........................................................177................................................
SizePerfect hitTotal NormPerfect NormSRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM416732(GSM416732)
MEF. (cell line)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR206941(GSM723282)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR306534(GSM750577)
19-24nt. (ago2 brain)
...............................................................................................CTGCCTCGAGAGAAGCCAGTCTCCCATACG...................................................................................................... 3013.003.00-----------3.00--------------------------------------------------
.............................................................................................................................................................CCACCCTCTCTCTCACGTA................................................... 1912.002.00------------------2.00-------------------------------------------
.................CCCGCTTCACTGCGGC.................................................................................................................................................................................................. 162.000.00-----------------1.00---------------------------1.00----------------
........................................................................................................................................................................................................TCGGCACTGGTACAGGAAAC....... 2012.002.00-----------------------2.00--------------------------------------
.........................................................................................................................................GGCGCCCTCAGTGGTACTT....................................................................... 191.000.00---------------1.00----------------------------------------------
......................................................................CTAATTGGAGGGGCTGTG........................................................................................................................................... 1811.001.00-------------1.00------------------------------------------------
.....................................................................................................................................................................TCTCTCACGTAGCTGCCT............................................ 181.000.00-------------------1.00------------------------------------------
............................................................................................................................................................................CGTAGCTGCTTCAGATCTGC................................... 2011.001.00-1.00------------------------------------------------------------
.................................................................................................GCCTCGAGAGAAGCCAGTCTCCCATACGGG.................................................................................................... 301.000.00-----------1.00--------------------------------------------------
............................................................................................................................................................GCCACCCTCTCTCTCACGTA................................................... 2011.001.00----1.00---------------------------------------------------------
.......................................................................................GCTGTGATCTGCCTCTTA.......................................................................................................................... 181.000.001.00-------------------------------------------------------------
................................................................................................TGCCTCGAGAGAAG..................................................................................................................... 14100.100.10-------------------------------------------------------------0.10