ID: mmu-mir-7035
GENE: Rasa4(16)
chr5:136581274-136581523+


(1)
AGO1.ip 		(12)
AGO2.ip 		(5)
B-CELL 		(24)
BRAIN 		(2)
CELL-LINE 		(1)
DGCR8.mut 		(4)
EMBRYO 		(7)
ESC 		(8)
FIBROBLAST 		(7)
HEART 		(2)
KIDNEY 		(7)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(17)
OTHER 		(8)
OTHER.mut 		(4)
PIWI.ip 		(2)
PIWI.mut 		(5)
SPLEEN 		(25)
TESTES 		(1)
THYMUS 		(6)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TCATCAATCAAAAATACCCCACAGGCTTCCCCACAGGTTAATCTGATGGAGACAGCTGCTCATTTGATCACCCCATTCCCAGATTGCTCTAGCTTCTTTGTACCAAGTGGAGAGTCTGTGAGGGGCTGGGAGAGTGGCTCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGCAC
....................................................................................................................................(((((((((((((...((.(((..(((....)))..))).))...)))))))))))))............................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		mjLiverWT3()
Liver Data. (liver)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjTestesWT2()
Testes Data. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGT.................................................221343.00343.00105.0042.0019.0013.0014.0013.009.00-8.007.004.008.004.00-5.006.005.001.002.002.003.002.004.004.003.003.004.002.002.003.002.001.00-4.001.001.004.00-2.00-1.001.002.001.002.001.003.003.001.00--2.001.001.00-1.00--1.002.00--1.00----1.00------1.00------------------------------1.00-----1.00-1.00----1.001.00----
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAG..................................................21186.0086.0012.0012.004.004.003.004.005.003.003.003.001.002.008.00-1.00-2.001.001.002.00--1.002.00---1.00------1.00---1.00----2.00-----1.00-1.00-1.00--------1.00-------------------------1.00--------------1.00-----------1.00--------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGA.................................................22152.0086.004.002.0014.00-1.003.00--2.00-1.003.00----1.00-1.001.00-2.001.00--2.00-1.00--3.00---1.00----1.001.00---1.00-----1.00------1.00--------1.001.00----1.00--------------------1.00------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTA................................................23138.00343.005.004.004.00-2.00-4.0011.001.00-1.00-------------2.00-1.00-----------1.00-----------1.00-----------------------------------------------------------------------1.00-
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTT................................................23117.00343.008.00-1.00-----------1.00-----4.001.00-----1.00-----------1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................TTCTGAGCCGCTGTCCCTGCAG..................................................2219.009.001.00--2.00-----2.00---2.00-----------------------------------------1.00------------------------1.00-------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAGA..............................................2517.00343.00---6.00-----------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCA...................................................2017.007.00-1.002.00------2.00----1.00--------------------------------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAT...............................................2417.00343.00---2.00--------------------1.00---1.00----------------1.00------1.00----------------------------1.00------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAA...............................................2415.00343.00-2.00--------1.00------------------------------------------------------2.00----------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAA..................................................2115.007.00-1.00----1.00------1.00---1.00-------------------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCCGT.................................................2214.003.00-1.00--------1.00------1.00-----------------------------------------------------------------------------1.00----------------------------
.........................................................................................................................................CTCAGAAGAGAGTACCA................................................................................................174.000.00-1.00-----------------------1.00----------------------1.00------------------------------------------------1.00--------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGA...........................................................................................................2014.004.00------------------1.00---------------------------------------------1.00---------------------1.00------------------------------1.00------
............................................................................................................................GCTGGGAGAGTGGCTCAGAAG.........................................................................................................2114.004.00----------------------------1.00--------------------1.00---------------------------------------------------1.00------------------1.00---
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTGT...............................................2214.004.00-------------4.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................CTGGGAGAGTGGCTCAGAAGAG.......................................................................................................2214.004.00----------1.00------------------2.00-----1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGAGCCGCTGTCCCTGCAGT.................................................2114.004.00------1.00--------1.00---1.00-------------------------------------------------------------------1.00------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGC....................................................1913.003.00-1.00------------------------------------------------1.00------------------------------------------------1.00------------------------
.............................................................................................................................CTGGGAGAGTGGCTCAGAAGAGA......................................................................................................2313.003.00-------3.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAA..........................................................................................................2113.003.00----------------------------------------------------------1.00----------------1.00---------------------------------------------1.00--
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAT................................................2313.0086.00----1.00----------------------------------------------------1.00--------1.00---------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGCA................................................2313.0086.00---------------------2.00---------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGC.................................................2213.0086.00-1.00---------------------------------2.00----------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAA.........................................................................................................2213.003.00------------------1.00-----------------------------------1.00---------------------------------------------------------1.00-----------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAG.........................................................................................................2213.003.00---1.00---------------1.00-----------------------------------------1.00--------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTTA...............................................2412.00343.00---------------------------------------------1.00------1.00-----------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAG..................................................1912.002.002.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCTA..........................................................................172.000.00--------------------------------1.00-----------------------1.00-------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAGA........................................................................................................2312.002.00--------------------------------------------------------------------------------------------1.00---------------1.00---------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGATT...............................................2412.0086.002.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TGAACGAGTTGAACCAGTGGCTG.......................2312.002.00---------------------------------------------------------------2.00------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTC................................................2312.00343.00-------1.00----------1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGAGCCGCTGTCCCTGCAGTA................................................2212.004.001.00--1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAA................................................2312.0086.001.00--------------------------------------1.00------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAG...............................................2412.00343.001.00--------------------------------------1.00------------------------------------------------------------------------------------
......................................TAATCTGATGGAGACAGCTGCTCATT..........................................................................................................................................................................................2612.002.00------------------------------------------------------------1.00------------------1.00--------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCGGT.................................................2211.003.00-----------------1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTG................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGTAGT.................................................221.000.00----1.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TGGCTCTGGGGAGGAAGGGGCAGAA........................................................................251.000.00-----------------------------------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCACG.................................................2211.007.00-----------------1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGCAA...............................................2211.002.00-----------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCTAG.........................................................................181.000.00--------------------------------1.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGGA................................................2311.0086.00-----------------------------------------------------------------------------------1.00----------------------------------------
..........................................................................................................................GGGCTGGGAGAGTGGCTCAGAAG.........................................................................................................2311.001.001.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGG.................................................2211.0086.00----------1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCATT.................................................2211.007.00----------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................CTGGGAGAGTGGCTCAGAATAG.......................................................................................................221.000.00----------------------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................................................................................................................TGTGAACGAGTTGAACCAGTGGCTGG......................2611.001.00-----------------------------------------------------------------------------1.00----------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAGTA.......................................................................................................2411.003.00----------------------------------------------------------------------------------------------------------1.00-----------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGGT.........................................................................181.000.00--------------------------------1.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGTGAACGAGTTGAACCAGTGGCTG.......................2511.001.00----------------------------------------------------------------------------------------------------1.00-----------------------
..............................................................................................................................................................................................................AACGAGTTGAACCAGTGGCTGTCTGC..................2611.001.00------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTT................................................2111.001.00-------------------------------1.00--------------------------------------------------------------------------------------------
....................................................................................................TACCAAGTGGAGAGTCTGTGAGGGG.............................................................................................................................2511.001.00-------------------------------------1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTTT...............................................2411.00343.001.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTATA..............................................2511.00343.00-------------------------------------------------------------------------------------1.00--------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAAA..............................................2511.00343.00--------------------------------------------------------------------------------------------------------------------1.00-------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTG................................................2311.001.00----------------------------------------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................................................................TGTGTGAACGAGTTGAACCAGTGGC.........................2511.001.00-----------------------------------------1.00----------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAAT...............................................2411.0086.00--------------------------------------------------------------------------------------------------1.00-------------------------
......................................TAATCTGATGGAGACAGCTGCTCATTT.........................................................................................................................................................................................2711.001.00------------------------------------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................................................GCTGTCCCTGCAGTGGGC.............................................181.000.00-----------------------------------------------------------------------------------------------------------1.00----------------
...........................................................................................................................................CAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCA...................................................6011.001.00------------------------------------------------------------------------------------------------------------------1.00---------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTCA...............................................2411.00343.001.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGGTC...............................................2411.0086.00----------1.00-----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGACG........................................................................191.000.00----------------------------------------------------------------------------------1.00-----------------------------------------
............................................................................................................................GCTGGGAGAGTGGCTCAGA...........................................................................................................1911.001.00----------------------------------------------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAAT.................................................2211.007.00-------------------------------------------------------------1.00--------------------------------------------------------------
...............................................................................................................................GGGAGAGTGGCTCAGTTC.........................................................................................................181.000.00-----------------------------------------------------------------------1.00----------------------------------------------------
.......................................................................................................................................................................................AGCCGCTGTCCCTGCAGTGT...............................................2011.001.00-------------1.00--------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGCAA........................................................................191.000.00------------------------------------------------------------------------------------1.00---------------------------------------
...............................................................................................................................................................................................................ACGAGTTGAACCAGTGGCTGTCTGCATTG..............2911.001.00--------------------------------------------------------------------1.00-------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGT.................................................2011.001.00------------------------------------------------------1.00---------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAGA...............................................2411.0086.00----------1.00-----------------------------------------------------------------------------------------------------------------
.........................................................................................................................GGGGCTGGGAGAGTGGAT...............................................................................................................181.000.00------------------------------------------------------------------------------------------------1.00---------------------------
..................................................................................................................................................................................TTCTGAGCCGCTGTCCCTGCCTGA................................................241.000.00----------------------------------1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ACCAGTGGCTGTCTGCATGA..............201.000.00---------------------------------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAAT..............................................2511.00343.00--------------1.00-------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGCTC........................................................................191.000.00------------------------------------------------------------------------------1.00---------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAAA...............................................2411.0086.00----------------------------------------------------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................CTGAGCCGCTGTCCCTGCAGAA................................................221.000.00------------------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTTT...............................................2211.001.00-------------------------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAGT........................................................................................................2311.003.00-------------------------------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGTAG........................................................................191.000.00--------------------------------1.00-------------------------------------------------------------------------------------------
...........................................TGATGGAGACAGCTGCTCATTTGATC.....................................................................................................................................................................................2611.001.00-------------------------------------1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAGT..............................................2511.00343.00--------------------------------------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................................................................................TGTGAACGAGTTGAACCAGTGGCTGGG.....................2711.001.00------------------------------------------------------------------------------------------1.00---------------------------------
.........................................................................................TAGCTTCTTTGTACCAAGTGGAGAGTC......................................................................................................................................2711.001.00--------------------------------------------------------------------------------------------------------1.00-------------------
.........................................................................................................................GGGGCTGGGAGAGTGGCTCAGAAG.........................................................................................................2411.001.00------------------------------------------1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................CTTCTGAGCCGCTGTCCCTGC....................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCCGA.................................................2211.003.00-1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTGTGTGAACGAGTTGAACCAGTGGC.........................2611.001.00-------------------------------------1.00--------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAT..........................................................................................................2111.004.00-------------------------------------------------------------------------------------------------------------1.00--------------
........................................ATCTGATGGAGACAGCTGCTCATTTG........................................................................................................................................................................................2611.001.00-------------------------------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCTTT.................................................201.000.00-------------1.00--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................AGTTGAACCAGTGGC.........................1560.170.17--------------------------------------------------------------------0.17-------------------------------------------------------
..................................................................................................................................................................................................................AGTTGAACCAGTGGCAGAT.....................1960.170.17---------------------------------------------------------------------------------------------------------------------------0.17

Antisense strand
TCATCAATCAAAAATACCCCACAGGCTTCCCCACAGGTTAATCTGATGGAGACAGCTGCTCATTTGATCACCCCATTCCCAGATTGCTCTAGCTTCTTTGTACCAAGTGGAGAGTCTGTGAGGGGCTGGGAGAGTGGCTCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGCAC
....................................................................................................................................(((((((((((((...((.(((..(((....)))..))).))...)))))))))))))............................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		mjLiverWT3()
Liver Data. (liver)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjTestesWT2()
Testes Data. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
.................CCCACAGGCTTCCCCACAA...................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------1.00-------------------------------------------------------------------
..........................................................................................................................................................................................................................CAGTGGCTGTCTGCAAGG.............. 181.000.00------------------------------------------------------------------------------------------------------1.00---------------------
..........................................................................................................................................................................................CGCTGTCCCTGCAGTGTAA............................................. 191.000.00----------------------------------------------------------------------1.00-----------------------------------------------------
......................................................................................................................................................................GAAGGGGCAGACTTCTGAGTTC.............................................................. 221.000.00-------------------------------------------------------------------------1.00--------------------------------------------------
........................................................................CCATTCCCAGATTGCTCTA............................................................................................................................................................... 1911.001.00-----------------------------------------1.00----------------------------------------------------------------------------------