ID: mmu-mir-7030
GENE: Rab35(4)
chr5:116095442-116095691+


(1)
AGO.mut 		(2)
AGO1.ip 		(15)
AGO2.ip 		(2)
AGO3.ip 		(12)
B-CELL 		(25)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(9)
EMBRYO 		(8)
ESC 		(6)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(8)
LIVER 		(1)
LUNG 		(5)
LYMPH 		(15)
OTHER 		(5)
OTHER.mut 		(6)
PIWI.ip 		(1)
PIWI.mut 		(6)
SKIN 		(9)
SPLEEN 		(19)
TESTES 		(3)
THYMUS 		(3)
TOTAL-RNA

Sense strand
TAGCACGGCAGAGGCAGCAGGAGGATTGTGAGTTTAAGGCTAGGCTGGGCTACAGAGTCATGGCAAAACACCCTGCAACACGTGTGCATGCACACACTAAGGTCTTGAGGACATACATGCAGTTCACAGAGAAATAGAAATATCCTGGGGAGGTGGCTGTGCTAGTCCACGGGGTCAGCCTTGCTCTGTTATCTCTCCAGATGTTCAACTGTATCACAGAGCTGGTTCTGCGAGCAAAGAAAGACAACTT
................................................................................................................................................(((((((((((((.(((((..(((...)))..)))...))...)))))))))))))..................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		mjLiverWT1()
Liver Data. (liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		mjLiverWT3()
Liver Data. (liver)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR206940(GSM723281)
other. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGT.................................................22197.0017.005.004.002.0010.00-8.003.00-4.00-2.00-3.001.001.001.003.00-2.004.00-4.00----1.00-2.001.002.001.002.001.002.00-1.002.003.001.00--1.00--2.00----1.00-------1.00--2.00-1.001.00--1.001.001.00-1.00-1.00-------1.00------1.00------1.00--1.00-----------------------1.001.00-1.00---------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAG..................................................21117.0017.001.00-2.00-----2.00------1.00-1.00--------1.00-1.00----------1.002.00----------1.00-------------2.00---------1.00-1.00---------------------------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGT....................................................................................21116.0016.00-1.00--------2.004.00----1.00-1.00---2.00------------1.00-1.00---1.00----------------1.00------------------------------1.00---------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTAGT....................................................................................24115.0015.00----11.00---------------1.00--------------1.00----------------------------------------------------------------1.00------------1.00---------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGTC...................................................................................22114.0014.00-1.00-----2.00--3.002.00-----1.001.00------1.00-1.00-------------1.00---------------1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTT................................................22114.002.003.00-1.00-------1.001.001.00-5.00--------------------------------------1.00-1.00-------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGC.................................................2219.0017.00--1.00---6.00------1.00---------------------------------------------------------------------------------------1.00---------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTAA...............................................2319.002.00---------9.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGA.................................................2219.009.00-1.00----2.00------1.001.001.00----------------------------------1.00-------------1.00-----------------------------------------1.00----------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCATTT................................................229.000.00------------1.00----4.00-----------------------1.00--------------1.00----------------------------------------1.00-----1.00-------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGTTT...............................................2228.000.50------------0.50-0.50------0.50--1.00-----------------0.50------------------------0.500.500.500.50-------------------------------------------------------0.500.500.500.500.50-0.50--
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCATT.................................................2216.003.001.00---------------------1.00----2.00--------------1.00-------------1.00------------------------------------------------------------------------------
................................................................................................................................................CTGGGGAGGTGGCTGTGCTAGT....................................................................................2216.006.00-1.00-----1.00---2.00------1.00------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTTT...............................................2315.002.00---2.00---------1.00---------------------------------------------1.00---------------------------------------------------1.00-----------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGTT................................................2314.0017.00--------4.00------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTC................................................2214.002.002.00-2.00------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGT.................................................2114.002.00----------------------1.00-------1.00---------1.00--------1.00-------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGACT...............................................2214.002.00-------------1.00-----------1.00-----------------------------------------------------1.00---------------------------1.00---------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGTAA..................................................................................2314.0016.00-------2.00---------------------1.00-------------------1.00-------------------------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTAG.....................................................................................2313.003.00------------------------1.00----1.00--1.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGACC...............................................2213.002.003.00--------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTTA...............................................2313.002.00--1.00-----------------------------------------2.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGAT................................................2313.003.00-----3.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCA...................................................2013.003.00--------------------3.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGA.................................................2113.003.00-------------------1.00--------------------------------------------------------------------------1.00-------------------------1.00--------------
...............................................................................................................................................CCTGGGGAGGTGGCTGTGCTAG.....................................................................................2212.002.00-1.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................................TAAGGTCTTGAGGACATACATGCAG................................................................................................................................2512.002.00-----------------------------------------------1.00--------------------------------------------------------1.00------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGAAT...............................................2212.002.00---------------------------------2.00-----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGA.................................................2012.002.001.00------1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCT.......................................................................................2112.002.00---------------------------------------1.00---1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................CCTGGGGAGGTGGCTGTGCTAGTA...................................................................................2412.001.00------------------------1.00----------1.00---------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCATT.................................................212.000.00-1.00-------------------------------------------------------------1.00-----------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTAA.....................................................................................2312.002.00--------------------------------------------------------------1.00--------------------------------------------------------1.00---------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGAAA...............................................2312.003.00-------1.00----------------------------------------------------------------------------------------1.00--------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGTAT..................................................................................2312.0016.00----------------------------------------------------------------------1.00------------1.00---------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTAGA....................................................................................2412.003.00--------------------------------------------------------------------------------------------1.00---------------1.00--------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGTCT..................................................................................2312.0014.00-1.00--------------1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGGGGAGGTGGCTGTGCTAG.....................................................................................2112.002.00------------------------------------------------------2.00--------------------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTT......................................................................................2212.002.00-1.00----------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAG..................................................2012.002.00-------------2.00-------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTA......................................................................................2212.002.00----------1.00--------------------------------------------------------------------------1.00-------------------------------------------------
.............................................................................................................................................................................................................................CTGGTTCTGCGAGCAAAGAAAGACAA...2612.002.00------------------------------------------------------------2.00--------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGTC................................................2121.500.500.50---------------------0.50-----0.50----------------------------------------------------------------------------------------------------------
...............................................................................................................................................CCTGGGGAGGTGGCTGTGCTAGT....................................................................................2311.001.00-----------------------------------------------------------1.00---------------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCTAGTT...................................................................................2511.0015.00------------------------------------------------------------------------------------------------------1.00--------------------------------
.....................................GGCTAGGCTGGGCTATAAA..................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------------1.00-----------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCGATA....................................................................................241.000.00-------------------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGACA...............................................2311.003.00--1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGAAC...............................................2211.002.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTG.........................................................................................1911.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAT..................................................2111.003.00-------------------------------------------------------------------------------------------------------------1.00-------------------------
.............................................TGGGCTACAGAGTCATGGCAAAACACCCT................................................................................................................................................................................2911.001.00---------------------------------------------------------------------------------------1.00-----------------------------------------------
..............................................................................................................................................TCCTGGGGAGGTGGCTGTGCAAA.....................................................................................231.000.00------------------------1.00--------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TGTTCAACTGTATCACAGAGCTGGT........................2511.001.00-------------------------------------------------------------------------------------------------------------------------1.00-------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGTA................................................2311.0017.00--1.00------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGGGGAGGTGGCTGTGCTAGA....................................................................................2211.002.00------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................TCCAGATGTTCAACTGTATCACAGAGCT...........................2811.001.00---------------------------------------------------------------------------------------------------------------------1.00-----------------
..........................................................................................................................................................................................................GTTCAACTGTATCACAGAGCTGGTTCT.....................2711.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGATTA..............................................2311.001.00--------------------------------------------------------------------------------------1.00------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGACA...............................................2211.002.00--1.00------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GGTTCTGCGAGCAAAGAAAGAC.....2211.001.00----------------------------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGAGAA..............................................2311.002.00--------------------------------------------------------------------------------------------------------------------1.00------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTAT...............................................2311.002.00------------------------------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TCTGCGAGCAAAGAAAGACAACT.2311.001.00--------------------1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ATCACAGAGCTGGTTGAA....................181.000.00-------------------------------------------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................ATCCTGGGGAGGTGGCTGTGT........................................................................................211.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTATAT...................................................................................221.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGAAAA.....................................................................................201.000.00---------------------------------------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................TGTTCAACTGTATCACAGAGCTGGTT.......................2611.001.00----------------------------------------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCATTA................................................221.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TGGTTCTGCGAGCAAAGAAAGACAAC..2611.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGTAG...............................................2411.0017.00-------------------------------1.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................GGGGAGGTGGCTGTGCTAGTC...................................................................................2111.001.00--------------------------------------------------------------------------------1.00------------------------------------------------------
......................................................................................................................................................................................GCTCTGTTATCTCTCCAGTTA...............................................211.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAG.....................................................................................2011.001.00-1.00-------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGAC................................................2211.003.00-------------1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCATTTT...............................................221.000.00------------------------------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGG.................................................2111.002.00---------------------------------------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCTATT.................................................221.000.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................TACAGAGTCATGGCAAAACACCCAGCA.............................................................................................................................................................................271.000.00---------------------------------------------------------------------------------------------------------1.00-----------------------------
........................................TAGGCTGGGCTACAGAGTCATGGCAAT.......................................................................................................................................................................................271.000.00----------------------------------------------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................ACAGAGCTGGTTCTGCGA.................1811.001.00-------------------------------------------------------------------------------------------------------------------1.00-------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGTT...................................................................................2211.0016.00----------------------------------------------------------------------------------------------------------------1.00----------------------
........................ATTGTGAGTTTAAGGCTAGGCTGGG.........................................................................................................................................................................................................2511.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCTTT.................................................221.000.00---------------------------------------------------------------------------------------------1.00-----------------------------------------
..............................................................................................................................................................................................................................TGGTTCTGCGAGCAAAGAA.........1911.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGCAGTTCACAGAGAAATAGAAATATCC.........................................................................................................2811.001.00------------------------------------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................ACAGAGCTGGTTCTGCGAGTCT.............221.000.00------------------------------------------------------------------1.00--------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCATTTT...............................................231.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCATTT................................................2311.003.00----------------------------------------------------1.00----------------------------------------------------------------------------------
........................................TAGGCTGGGCTACAGAGTCATGGCAAAAC.....................................................................................................................................................................................2911.001.00-------------------------------------------------------1.00-------------------------------------------------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCAAA.....................................................................................201.000.00------------------------------------------------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGCGA...............................................2311.002.00--1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCAGG.................................................2211.0017.00-------------------------------------------------------------------------------------------1.00-------------------------------------------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTAGTCA..................................................................................2311.0014.00-1.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGAAAT..............................................2311.002.00----------------------------------------------------------------------------------------------------------------------------1.00----------
.................................................................................................................................................TGGGGAGGTGGCTGTGCTATT....................................................................................211.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
.............................................................................................................................................ATCCTGGGGAGGTGGCTGTGCAGAG....................................................................................251.000.00------------------------------------------------------------------------------------------1.00--------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCAGTTAT..............................................2411.002.00------------------------------------------------1.00--------------------------------------------------------------------------------------
..................................................................................................................................................GGGGAGGTGGCTGTGCTAGTCA..................................................................................2211.001.00------------------------------------------------------------------1.00--------------------------------------------------------------------
.........................................................................................................................................................................................................TGTTCAACTGTATCACAGAGCTGGTTCT.....................2811.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GTTCAACTGTATCACAGAGCTGG.........................2311.001.00----------------------------------------------------------------------------------1.00----------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCAAGT.................................................221.000.00----------------------------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TGGTTCTGCGAGCAAAGAAAGACAACTTGT301.000.00-------------------------------1.00-------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGAT................................................2111.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTGCTCTGTTATCTCTCCATAAA...............................................231.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGAC................................................2111.002.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
....................GAGGATTGTGAGTTTAAGGCTAGGCTGT..........................................................................................................................................................................................................281.000.00----------------------------------------------------------------------------1.00----------------------------------------------------------
.............................................................................................................................................ATCCTGGGGAGGTGGCTGTGCTT......................................................................................231.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGCTCTGTTATCTCTCCATA.................................................2211.003.00--------------------------------------------------------------------------------------------------------------1.00------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGTTTA..............................................2320.500.50-----------------------------------------------------------------------------------------------------------------------------------0.50---
.................................................................................................................................................TGGGGAGGTGGCTGTGCT.......................................................................................1820.500.50-----------------------0.50---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAGTTCA..............................................2320.500.50---------------0.50-----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCTCTGTTATCTCTCCAG..................................................1920.500.50-----------------------------------------------------------------------0.50---------------------------------------------------------------
..................AGGAGGATTGTGAGTTTAAGGC..................................................................................................................................................................................................................2230.330.33--------------------------------------------------------------------------------------------------------------------------------------0.33
.......................................................................................................................................................GGTGGCTGTGCTAGT....................................................................................1530.330.33-------------------------------------------------------------------------------------------------------------------------------------0.33-
........CAGAGGCAGCAGGAGGA.................................................................................................................................................................................................................................1790.110.11--------------0.11------------------------------------------------------------------------------------------------------------------------

Antisense strand
TAGCACGGCAGAGGCAGCAGGAGGATTGTGAGTTTAAGGCTAGGCTGGGCTACAGAGTCATGGCAAAACACCCTGCAACACGTGTGCATGCACACACTAAGGTCTTGAGGACATACATGCAGTTCACAGAGAAATAGAAATATCCTGGGGAGGTGGCTGTGCTAGTCCACGGGGTCAGCCTTGCTCTGTTATCTCTCCAGATGTTCAACTGTATCACAGAGCTGGTTCTGCGAGCAAAGAAAGACAACTT
................................................................................................................................................(((((((((((((.(((((..(((...)))..)))...))...)))))))))))))..................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		mjLiverWT1()
Liver Data. (liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		mjLiverWT3()
Liver Data. (liver)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR206940(GSM723281)
other. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjTestesWT2()
Testes Data. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
.............GCAGCAGGAGGATTGACA........................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------1.00---------------------------------------------------------------------------------
.....................................................................................................................TGCAGTTCACAGAGAGCT................................................................................................................... 181.000.00------------------------------------------------------------------------1.00--------------------------------------------------------------
....................................................................................................................ATGCAGTTCACAGAGAAATAGAAATATCC......................................................................................................... 2911.001.00-----------------------------------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................ATGCAGTTCACAGAGAAATAGAAATATCCT........................................................................................................ 301.000.00------------------------------------------------------------------------------1.00--------------------------------------------------------
.......................................................................................................................CAGTTCACAGAGAAATAGAAATATCCT........................................................................................................ 271.000.00------------------------------------------------------------------------------------------------------------------1.00--------------------
................................................................................................................................................CTGGGGAGGTGGCTGATCC....................................................................................... 191.000.00--------------------------------------------------------------------------1.00------------------------------------------------------------
..............................................................................................................................................................GTGCTAGTCCACGGGGTCAGCCTTGCTCTGTTATCTCTCCAGATGTTCAACTGTATCACAGAGCTGGTTCTGCGAGCAAAGAAAGACAACT. 9111.001.00----------------------------------------------------------------------------------------------------------------------1.00----------------
.................CAGGAGGATTGTGAGACCT...................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------1.00------------------------------------------------------------------------