ID: mmu-mir-7005
GENE: Lama5(66)
chr2:179914410-179914590-


(2)
AGO1.ip 		(1)
AGO2.ip 		(2)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(5)
CELL-LINE 		(1)
DCR.mut 		(11)
EMBRYO 		(10)
ESC 		(1)
FIBROBLAST 		(2)
KIDNEY 		(1)
LIVER 		(2)
LYMPH 		(3)
OTHER 		(2)
OTHER.mut 		(1)
PIWI.ip 		(4)
SKIN 		(2)
SPLEEN 		(5)
TESTES 		(2)
TOTAL-RNA 		(2)
UTERUS

Sense strand
AGGCCGACCCACTGCAGCCCCCACAAGCCTTGACGGCAGCCAGCAAGGCGGTAAGGCAAGGAAGGGGCCTGGGGATGGGAGGACCAGCAGAGAAATTTGGCTTTCCTGTGCCTGCTACCCATCCCTTGCAGATCCAAGTGTTTCTATTGGCTGGCAATCGCAAACGTGTGTTGGTGCGTGT
..................................................................((..(((((((((.((....((((.((((......)))))))).....)).))))))))).))....................................................
..............................................................63..................................................................131................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM416732(GSM416732)
MEF. (cell line)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
...................................................................CCTGGGGATGGGAGGACCAGCA............................................................................................22124.0024.001.006.004.00-3.00-1.002.001.00---1.00-1.00-----1.002.00-----------------1.00----------------
...................................................................CCTGGGGATGGGAGGACCAGC.............................................................................................21117.0017.004.00-2.00-3.00-3.00-1.00---1.00-------1.00-------------1.00--------1.00------------
................................ACGGCAGCCAGCAAGGCG...................................................................................................................................18112.0012.00-----5.00-----4.00-----------------------------1.001.00-----1.00-------
.................................CGGCAGCCAGCAAGGCG...................................................................................................................................17110.0010.00-----2.00---6.00----1.00-------------------------1.00---------------
...................................................................CCTGGGGATGGGAGGACCAGCAT...........................................................................................2318.0024.003.00-3.00-1.00--1.00------------------------------------------------
.................................................................................................................................................ATTGGCTGGCAATCGCAAACGT..............2217.007.00------2.001.00----1.002.00---------------1.00--------------------------
...................................................................CCTGGGGATGGGAGGACCAG..............................................................................................2017.007.005.00-------1.00----------------------------1.00------------------
..................................................GTAAGGCAAGGAAGGGGCCTGGGGATGGGAGGACCAGCAGAGAAATTTGGCTTTCCTGTGCCTGCTACCCATCCCTTGCAG..................................................8117.007.00---7.00----------------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCAA...........................................................................................2316.0024.003.00-2.00--------------1.00--------------------------------------
..................................................GTAAGGCAAGGAAGGGGCCTGGGGATGGGAGGACCAGCAGAGAAATTTGGCTTTCCTGTGCCTGCTACCCATCCCTTGC....................................................7915.005.00---5.00----------------------------------------------------
.........................................................................................................CTGTGCCTGCTACCCATCCCTTGCA...................................................2515.005.00-2.001.00---------------1.00--------------------------1.00----------
.................................................................................................................................................ATTGGCTGGCAATCGCAAACGTGT............2413.003.00------1.001.00-----1.00------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCAGT..........................................................................................2413.001.001.00---1.00--------------------------1.00------------------------
...................................................................CCTGGGGATGGGAGGACCA...............................................................................................1923.003.002.00-1.00-----------------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCATT..........................................................................................2412.0024.002.00-------------------------------------------------------
....................................................................CTGGGGATGGGAGGACCAGCAGA..........................................................................................2312.002.00-2.00------------------------------------------------------
.................................CGGCAGCCAGCAAGGCGGTAAGG.............................................................................................................................2312.002.00-1.00--------1.00---------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCT............................................................................................2212.0017.001.00--------------------------------------------------1.00----
....................................................................CTGGGGATGGGAGGACCAGCAG...........................................................................................2212.002.00-1.001.00-----------------------------------------------------
.........................................................................................................CTGTGCCTGCTACCCATCCCTTGCAG..................................................2612.002.00-------------------2.00------------------------------------
........................................................................................................CCTGTGCCTGCTACCCATCCCTTGC....................................................2512.002.00-1.00------1.00-----------------------------------------------
....................................................................................................................................................GGCTGGCAATCGCAAACGT..............1912.002.00----------------1.00---------------1.00-----------------------
...................................................................CCTGGGGATGGGAGGACCAGA.............................................................................................2112.007.00-------1.00---------------------------1.00--------------------
................................ACGGCAGCCAGCAAGGCGGTAAGGC............................................................................................................................2512.002.00-2.00------------------------------------------------------
...................................................................CCTGGGGATGGGAGGACC................................................................................................1831.671.670.67-1.00-----------------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAA..............................................................................................2021.503.001.00-0.50-----------------------------------------------------
...............................................................................AGGACCAGCAGAGAAAT.....................................................................................1731.331.33-0.33---1.00--------------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCATAT.........................................................................................2511.0024.00--------------1.00-----------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGTAA...........................................................................................2311.007.00-1.00------------------------------------------------------
.........................................................................................................CTGTGCCTGCTACCCATCCCTTGT....................................................241.000.00---------------------------------1.00----------------------
...................................................................CCTGGGGATGGGAGGACCAGCAAA..........................................................................................2411.0024.00--1.00-----------------------------------------------------
...................................................................CCTGGGGATGGGAGGACTAA..............................................................................................201.000.001.00-------------------------------------------------------
.....................................................................TGGGGATGGGAGGACCAGCAG...........................................................................................2111.001.00------------------------1.00-------------------------------
..........................................................................................................................................TGTTTCTATTGGCTGGCAATC......................2111.001.00-------------------------------------------------1.00------
...................................................................CCTGGGGATGGGAGGACCAT..............................................................................................2021.003.00------------------1.00-------------------------------------
.................................CGGCAGCCAGCAAGGCGGTAAGGC............................................................................................................................2411.001.00-----1.00--------------------------------------------------
........................................CAGCAAGGCGGTAAGGCA...........................................................................................................................1811.001.00----------1.00---------------------------------------------
............................................................................................................................................TTTCTATTGGCTGGCAATCGCAAACGT..............2711.001.00-----------------1.00--------------------------------------
..............................................................AGGGGCCTGGGGATGGGAGGACCAGCAGAGAAAT.....................................................................................3411.001.00----------------------------------------------1.00---------
.......................................................GCAAGGAAGGGGCCTGGGG...........................................................................................................1911.001.00--------------------------------------------------1.00-----
.............................................................................................................GCCTGCTACCCATCCACC......................................................181.000.00---------------1.00----------------------------------------
.............................TTGACGGCAGCCAGCAAGGCGGTAA...............................................................................................................................2511.001.00---------------------------1.00----------------------------
...................................................................................................................................................TGGCTGGCAATCGCAAACGTGT............2211.001.00--------------------------------------------1.00-----------
......................ACAAGCCTTGACGGCAGCCAGCAAG......................................................................................................................................2511.001.00-------------------------1.00------------------------------
...............................................GCGGTAAGGCAAGGAAGGGG..................................................................................................................2011.001.00----------1.00---------------------------------------------
....................................................................................................................................................GGCTGGCAATCGCAAACGTGTGTT.........2411.001.00----------------1.00---------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCAAAGA........................................................................................2611.0024.00----1.00---------------------------------------------------
.................................................................................................................................................ATTGGCTGGCAATCGCAAAC................2011.001.00------1.00-------------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAGCAG...........................................................................................2311.001.00------------------------------1.00-------------------------
..................................GGCAGCCAGCAAGGCGATCC...............................................................................................................................201.000.00------------------------------------1.00-------------------
...................................................................CCTGGGGATGGGAGGACCAAT.............................................................................................2121.003.001.00-------------------------------------------------------
............................................................................................................TGCCTGCTACCCATCCCTTGCAG..................................................2311.001.00----1.00---------------------------------------------------
..........................GCCTTGACGGCAGCCCAA.........................................................................................................................................181.000.00---------------1.00----------------------------------------
................................................CGGTAAGGCAAGGAAGGGGCC................................................................................................................2111.001.00----------1.00---------------------------------------------
.................................................................GGCCTGGGGATGGGAGGACCAGCA............................................................................................2411.001.00-1.00------------------------------------------------------
..............................................................................................................CCTGCTACCCATCCCTTGCAGT.................................................221.000.00--------1.00-----------------------------------------------
.....................CACAAGCCTTGACGGCAGCCAGCAAGGCG...................................................................................................................................2911.001.00-----1.00--------------------------------------------------
.....................................................................TGGGGATGGGAGGACCAGCAGT..........................................................................................2211.001.00--------1.00-----------------------------------------------
....................................................................CTGGGGATGGGAGGACCAG..............................................................................................1911.001.00----1.00---------------------------------------------------
.................................CGGCAGCCAGCAAGGCGGTA................................................................................................................................2011.001.00----------1.00---------------------------------------------
...................................................................CCTGGGGATGGGAGGACCAAAA............................................................................................2220.503.00----------------------------------------------------0.50---
..............................................................AGGGGCCTGGGGATGG.......................................................................................................1670.140.14-------------------------------------------------------0.14

Antisense strand
AGGCCGACCCACTGCAGCCCCCACAAGCCTTGACGGCAGCCAGCAAGGCGGTAAGGCAAGGAAGGGGCCTGGGGATGGGAGGACCAGCAGAGAAATTTGGCTTTCCTGTGCCTGCTACCCATCCCTTGCAGATCCAAGTGTTTCTATTGGCTGGCAATCGCAAACGTGTGTTGGTGCGTGT
..................................................................((..(((((((((.((....((((.((((......)))))))).....)).))))))))).))....................................................
..............................................................63..................................................................131................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM416732(GSM416732)
MEF. (cell line)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
................GCCCCCACAAGCCTTGAC................................................................................................................................................... 181.000.00----------------------------1.00---------------------------
............................CTTGACGGCAGCCAGCAAGGCGGTAA............................................................................................................................... 2611.001.00-----------------------------------------------1.00--------
.....GACCCACTGCAGCCCCCACAAGC......................................................................................................................................................... 2311.001.00-----------------------1.00--------------------------------
......................................................................................................................CCATCCCTTGCAGATCCAAGTGT........................................ 2311.001.00------1.00-------------------------------------------------
........CCACTGCAGCCCCCACTG........................................................................................................................................................... 181.000.00----------------------1.00---------------------------------
........................................................................................................CCTGTGCCTGCTACCCATCCCTTGCA................................................... 2611.001.00--------------------------------------1.00-----------------
.................................CGGCAGCCAGCAAGGCAG.................................................................................................................................. 181.000.00--------------------------1.00-----------------------------
.......CCCACTGCAGCCCCCACAAGC......................................................................................................................................................... 2120.500.50-----------------------------------------------------0.50--
.........CACTGCAGCCCCCACAAG.......................................................................................................................................................... 1820.500.50------------------------------------------------------0.50-