ID: mmu-mir-6995
GENE: Sh3pxd2a(3)
chr19:47347959-47348208-


(2)
AGO1.ip 		(9)
AGO2.ip 		(2)
AGO3.ip 		(6)
B-CELL 		(21)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(6)
ESC 		(7)
FIBROBLAST 		(8)
LIVER 		(1)
LUNG 		(14)
OTHER 		(4)
OTHER.mut 		(1)
OVARY 		(2)
PANCREAS 		(2)
PIWI.ip 		(6)
SKIN 		(5)
SPLEEN 		(9)
TESTES 		(1)
THYMUS 		(4)
TOTAL-RNA 		(2)
UTERUS

Sense strand
TCTGAGAGCAGTCGCTCTGTTTCCAGCATCTGACCCCCCCCAGCTCTGGTTTCCTCGGCAACAACAGACCGGCCAAACCTCTAGCAGAGCCTTCCAGAGAAGGCTCGGCTAGGCGGGCTCAGATGGAGACAGACCTGGGAGTAGAAGGGGGAAACCAGAAATGAGGGCTTTAATGATGGTGTGTCCCCTTCCTCTCACAGGTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCA
......................................................................................................................................(((.(((..((((((((..((((...((..........))..))))...))))))))..))).)))..................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206941(GSM723282)
other. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjLiverWT1()
Liver Data. (liver)
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGT.................................................22127.005.001.00--6.001.001.00------3.00-----------------2.00-1.00---3.00-----1.00-------------1.00-1.00--1.00--------1.00----1.00--------1.001.00----------1.00----------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAACCA.............................................................................................23126.0026.00--1.00--1.002.003.003.001.001.001.00-1.00----1.001.00---1.00-----------1.00----1.00------2.001.00-1.00-1.00-----------------------------------1.00----1.00-------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACA...................................................21112.0012.002.00--1.00--1.00--------------------2.00------3.00--------1.001.00-----------1.00--------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAACCAT............................................................................................24112.0026.00--1.00----2.00-2.001.00------------------1.00-1.001.00------1.00----------------------------------1.00-------1.00------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAACCA.............................................................................................24111.0011.00--6.00---1.00--1.00-2.00-1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACAGT.................................................23111.003.00-----2.00-1.00----------------------1.00-------1.00-------1.00-------1.00--2.00-------------------------------------1.00----1.00------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGA.................................................22110.005.001.00-----------1.00--------------------3.00------------1.00------2.00-------------------------------------------1.00------1.00--
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAACC..............................................................................................2317.007.00----------2.001.00---1.00-----1.001.00------------------------------------------1.00-----------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAACCA.............................................................................................2216.006.00---------1.00-----1.00-1.00------2.00-1.00--------------------------------------------------------------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAG..................................................2115.005.00---------------2.00----------------------1.00----------------------------------------1.00---------------------1.00-----
.............................................................................................................................................................GAAATGAGGGCTTTAATGATGG.......................................................................2214.004.00-4.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGG...................................................................................................1814.004.00--------------------3.00-----------------------------------------------------------------------1.00--------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAAC...............................................................................................2214.004.00------1.00----------1.00-------1.00----------------------------------------------------------------1.00----------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAAA................................................................................................2214.004.00----------1.00--------------1.00--1.00------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACAG..................................................2213.003.00----------------------1.00----------------1.00--1.00----------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACAGA.................................................2313.003.001.00--1.00---1.00---------------------------------------------------------------------------------------------------
...............................................................................TCTAGCAGAGCCTTCCAGAGAAG....................................................................................................................................................2313.003.00----------------2.00----------1.00-------------------------------------------------------------------------------
.....................................................................................................................................................................GGCTTTAATGATGGTGTGTCCCCTTC...........................................................2613.003.00-3.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAACC..............................................................................................2213.003.00-------------------------1.00-----1.001.00--------------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCAC....................................................2013.003.00-----1.00--------------------------------------------1.00--------------------------------------1.00-----------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAAT...............................................................................................2213.002.00--------------3.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCATT...................................................2113.002.00----2.001.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAACC..............................................................................................2113.003.00----------------1.00--------------------------------2.00---------------------------------------------------------
.............................................................................................................................................................GAAATGAGGGCTTTAATGATG........................................................................2113.003.00---------------------1.00---------------------------------------------------1.00----1.00----------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAAC...............................................................................................2113.003.00-----------------1.00----------1.00----------------------1.00-------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAACCAAA...........................................................................................2512.0026.00-----------------------1.00----------------------------------------------------1.00------------------------------
............................................................................................................................................................AGAAATGAGGGCTTTAATGATGG.......................................................................2312.002.00-----------------------1.00-----------------1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................................CACCAGCGTCCTACCTGAAGAAGGCCA2712.002.00---------------------------------------------------------------------1.00----------1.00--------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCAAT...................................................2112.002.00----2.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAAC...............................................................................................2012.002.00--------1.00----------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAA................................................................................................2112.002.00-----------1.00------1.00----------------------------------------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAAAC...............................................................................................2312.002.00-------------------------------1.00----------------------1.00----------------------------------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAAAA..............................................................................................2312.002.00------1.00--------------------------------------------------------------------------------------------1.00-------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACG...................................................2112.003.002.00----------------------------------------------------------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAA.................................................................................................2112.002.00--------1.00----------------------------------------------1.00---------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAACCAT............................................................................................2312.006.00----------------------------------------1.00----------------------------------------1.00-------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAAT...............................................................................................212.000.00-----------------1.00----------1.00------------------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCA.....................................................1912.002.001.00-------------------------------------------1.00--------------------------------------------------------------
.....................................................................................AGAGCCTTCCAGAGACCT...................................................................................................................................................181.000.00-------------------------------------------------------------------1.00---------------------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACATA.................................................2211.001.00------------1.00----------------------------------------------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGCAAC...............................................................................................2111.001.00----1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAACCATAA..........................................................................................2611.0026.00----------------------------------------------------1.00------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGATT.................................................................................................211.000.00-------------------------------------------------------1.00---------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAT................................................................................................191.000.00--------1.00--------------------------------------------------------------------------------------------------
......................................................................................................................TCAGATGGAGACAGACTCT.................................................................................................................191.000.00-------------------------------------1.00---------------------------------------------------------------------
...............................................................................TCTAGCAGAGCCTTCCAGAGAAGGA..................................................................................................................................................251.000.00----------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGG...................................................................................................1911.001.00---------------------------------------------------1.00-------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCCC....................................................201.000.001.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAACG..............................................................................................2311.004.00---------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GAGGGTTGGGCACCAGC....................1711.001.00-----------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGC.................................................2211.005.001.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAAA...............................................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00--------
.....................................................................................................................................CCTGGGAGTAGAAGGGGTAT.................................................................................................201.000.00-------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAACA..............................................................................................2311.004.00---------------------------------------------1.00-------------------------------------------------------------
............................................................................................................................................................AGAAATGAGGGCTTTAATGATGGTG.....................................................................2511.001.00---------------------------------------------------------------1.00-------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACAGTTT...............................................2511.003.00------------------------------------------------1.00----------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAAACT..............................................................................................2411.002.00---------------------------------------------1.00-------------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAATT...............................................................................................2311.002.00-------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGATT...............................................2411.005.00-----------------------------------------1.00-----------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAACCAAT...........................................................................................2411.006.00-------------------------------------------------------------------------------------------------------1.00---
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAAT................................................................................................2211.002.00-------------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAACCCA.............................................................................................221.000.00--------------------------1.00--------------------------------------------------------------------------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAACTA.............................................................................................2411.004.00------------------------------------------------------------------1.00----------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTAAT....................................................201.000.00-----1.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCAAAT..................................................2211.002.00-----------------------------------------------------------------------------------1.00-----------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAC.................................................................................................211.000.00-----------------------------1.00-----------------------------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGGGAATAA..............................................................................................2411.002.00------------------------------------------------------------1.00----------------------------------------------
.............................................................................................................................................................GAAATGAGGGCTTTAATGATAG.......................................................................221.000.00-1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CCTCGGCAAAGAGGGTTGGG...........................2011.001.00-------------------1.00---------------------------------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAACCAA............................................................................................2311.006.00---------------------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................GTGTGTCCCCTTCCTCTCACAT..................................................2211.0012.00--------------1.00--------------------------------------------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAATAAA.............................................................................................2311.001.00----------------------1.00------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GTTGGGCACCAGCGTCCT...............1811.001.00--------------------------------------------------------------1.00--------------------------------------------
.............................................................................................................................................................GAAATGAGGGCTTTAATGATGGTGT....................................................................2511.001.00-------------------------------------------1.00---------------------------------------------------------------
....................................................................................................................................ACCTGGGAGTAGAAGGGAT...................................................................................................191.000.00---------------------------------------------------------------------------------------1.00-------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGTTT...............................................2411.005.00--------------------------------------------------------------------------------------1.00--------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAACCAT.............................................................................................221.000.00------------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAAACCAA............................................................................................2411.0026.00--------------------------------------------------------------------1.00--------------------------------------
........................................................................................................................................GGGAGTAGAAGGGGGAAACCAGAA..........................................................................................2411.001.00-------------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................TGAGGGCTTTAATGATGGTGTG...................................................................2211.001.00------------------1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CGTCCTACCTGAAGAAGGC..1911.001.00------------------------------------------------------------------------------------------------------1.00----
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCCCAG..................................................211.000.00----1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................................GAAATGAGGGCTTTAATGCTGG.......................................................................221.000.00-1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAA.................................................................................................1911.001.00-----------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGAGA...............................................2411.005.00----1.00------------------------------------------------------------------------------------------------------
..............................................................................................................................................................AAATGAGGGCTTTAATGATGG.......................................................................2111.001.00--------------------------1.00--------------------------------------------------------------------------------
..........................................................................................................................................GAGTAGAAGGGGGAAACC..............................................................................................1811.001.00-----------------------------------1.00-----------------------------------------------------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACA...................................................2011.001.00----------------------------------------------------------------------------------------------1.00------------
.....................................................................................................................................CCTGGGAGTAGAAGGGGGAAACCAT............................................................................................2511.0011.00----------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGTGTCCCCTTCCTCTCACAGAT................................................2311.005.00-----------------------------------------------------------------------1.00-----------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGG...................................................................................................1711.001.00-----------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................GGCTAGGCGGGCTCACAT..............................................................................................................................181.000.00-------------------------------------------------------------------------------------------1.00---------------
.....................................................................CGGCCAAACCTCTAGCAGAGC................................................................................................................................................................2111.001.00----------------------------------------------------------------1.00------------------------------------------
......................................................................................................................................CTGGGAGTAGAAGGGGGAACAA..............................................................................................2211.001.00------1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................TGGGAGTAGAAGGGGGAAA................................................................................................1911.001.00------------------------------------------------------------------------1.00----------------------------------
..............................................................AACAGACCGGCCAA..............................................................................................................................................................................1420.500.50-------------------------------------0.50---------------------------------------------------------------------
..........................................................................................................................ATGGAGACAGACCTGGG...............................................................................................................1730.330.33---------------------------------------------------------------------------------------------------------0.33-
.....................................................................................................................................CCTGGGAGTAGAAGG......................................................................................................1590.110.11--0.11--------------------------------------------------------------------------------------------------------

Antisense strand
TCTGAGAGCAGTCGCTCTGTTTCCAGCATCTGACCCCCCCCAGCTCTGGTTTCCTCGGCAACAACAGACCGGCCAAACCTCTAGCAGAGCCTTCCAGAGAAGGCTCGGCTAGGCGGGCTCAGATGGAGACAGACCTGGGAGTAGAAGGGGGAAACCAGAAATGAGGGCTTTAATGATGGTGTGTCCCCTTCCTCTCACAGGTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCA
......................................................................................................................................(((.(((..((((((((..((((...((..........))..))))...))))))))..))).)))..................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206941(GSM723282)
other. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjLiverWT1()
Liver Data. (liver)
..................................................................................................................................................................................................................................CAGCGTCCTACCTGATAT...... 181.000.00-------------------------------------1.00---------------------------------------------------------------------
.........................................................................................................................................................................TTAATGATGGTGTGTCCTGA............................................................. 201.000.00------------------1.00----------------------------------------------------------------------------------------
............................................TCTGGTTTCCTCGGC............................................................................................................................................................................................... 1550.200.20----------------------------------------------------------------------------------------------------------0.20