ID: mmu-mir-6992
GENE: Stx5(3)
chr19:8817365-8817619+


(1)
AGO1.ip 		(1)
AGO2.ip 		(4)
B-CELL 		(6)
BRAIN 		(5)
CELL-LINE 		(3)
DCR.mut 		(1)
DGCR8.mut 		(13)
EMBRYO 		(12)
ESC 		(5)
FIBROBLAST 		(6)
LIVER 		(1)
LYMPH 		(11)
OTHER 		(5)
OTHER.mut 		(6)
PIWI.ip 		(3)
PIWI.mut 		(1)
SKIN 		(4)
SPLEEN 		(1)
TDRD1.ip 		(26)
TESTES 		(3)
THYMUS

Sense strand
CCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAGGTGAGTTGAGAGGGGCGTTGTGGTGGGGTGATACAGTGTCTTAAGTATATCTGCCTGTGATGGTTTGGCTGAGTGGAATTGGTTGTGTTGGAGGTTATGGTAACAGCCTCTTTCCTGCCCTTTACCACAACCTTCTCACTGATGATCATTTGCAGGCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAA
....................................................................................................((((..(((((.(((......(((((((..(((((((.((((((.((.((.............)))).)))))).)))))))))).))))))).)))))..))))..................................................
................................................................................................97..........................................................................................................205................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT1()
Testes Data. (testes)		SRR073954(GSM629280)
total RNA. (blood)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		mjLiverWT1()
Liver Data. (liver)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059768(GSM562830)
Treg_control. (spleen)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGT...................................................................................................................................231410.00410.00102.0062.0087.0030.0023.0013.008.003.002.003.006.003.00-9.001.00-8.006.003.005.003.001.003.00--1.002.00-1.002.00-1.002.001.00-2.001.00----3.001.001.001.00----1.001.002.00----------1.00---1.00-----1.00-------1.00------1.001.00--------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTG..................................................................................................................................241102.00102.0038.0011.007.0011.004.004.004.00--2.002.00-3.001.00-----1.00---2.00--1.00-1.00-2.00-----------1.00--1.001.002.00-------1.00--------------1.00------1.00-------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGT...................................................................................................................................22178.0078.0013.0016.0012.002.008.004.003.00-2.001.002.00-3.001.00-------1.001.00------2.00--1.00----1.00----1.001.00-1.00------1.00-----------1.00--------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGG.................................................................................................................................25165.0065.0017.0012.003.0012.001.00---2.002.00-1.001.00----1.004.00-----4.00---1.00----1.00-----2.00--------------------------------------------------1.00------
......................................................................................................................................................................................................................................ACATTTGCCAAGCTGGAGAAGCT..23128.0028.00-------9.00--1.005.00--6.00------3.00---1.00-----2.00----------------------------1.00------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTG..................................................................................................................................23125.0025.0012.002.00-4.002.001.00------------------------------------------1.001.00----2.00------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGA................................................................................................................................26119.0019.00--2.004.001.002.00--2.00---2.00----------1.00---2.001.00------------------------2.00-------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGAA...............................................................................................................................27115.0015.007.00-------5.00---------------------2.00------------------------1.00-----------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAG....................................................................................................................................22111.0011.00--5.00-1.00---2.00-1.00----------------------1.00-----1.00---------------------------------------------------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGCAG..................................................22110.0010.00-5.00------------------------------1.00--1.00--------1.00---------------------------------1.00-------------1.00----
......................................................................................................................................................................................TTCTCACTGATGATCATTTGCAG..................................................2319.009.00---------------9.00---------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTGG.................................................................................................................................2418.008.001.002.00---4.00-------------------------------1.00-----------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAG..................................................2118.008.00------5.00---------------1.00-----------1.00----------------------------------------------1.00---------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGA.................................................2217.008.006.00------------------------1.00-----------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGTG....................................................................................................................................................................................2516.006.00----------------------------------------------1.00---------------------1.00-------------1.00---1.00--1.00---1.00---
......................................................................................................GCCTGTGATGGTTTGGCTGAGTGGA................................................................................................................................2515.005.00-1.00-1.00-2.00---1.00---------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGCGT...................................................................................................................................235.000.004.00-----------------1.00------------------------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGAA................................................2314.008.00--------------------2.00--------------------------------------1.00------------------------1.00------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGCAGA.................................................2314.0010.00-------2.00---1.00--------------------------------------------------------------1.00----------------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGC....................................................2014.004.004.00------------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGAATT.............................................................................................................................2913.003.003.00------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTTGGAGGTTATGGTAACAGCC.................................................................................................2313.003.00-------3.00-----------------------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGT.....................................................................................................................................................................................2413.003.00---------1.00----------------1.00-------------------------------------------------1.00--------------------
................................................................................ATACAGTGTCTTAAGTATATCTGCCTGTGATGGTTTGGCTGAGTGGAATTGGTTGTGTTGGAGGTTATGGTAACAGCCTCTTTCCTGCCCTTTAC................................................................................9513.003.00----------------------------------------3.00--------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGC...................................................................................................................................2313.0011.001.00-------1.00-------------1.00--------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAG....................................................................................................................................2113.003.00-2.00--------------------------------1.00--------------------------------------------------------------
.........................................................................................................TGTGATGGTTTGGCTGA.....................................................................................................................................1712.002.00-----------------2.00-------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTTAGT...................................................................................................................................232.000.002.00------------------------------------------------------------------------------------------------
................................ATTTACCCTCATGGCCAG.............................................................................................................................................................................................................1812.002.00-------------------1.001.00----------------------------------------------------------------------------
..........................................................................................................................................................................................CACTGATGATCATTTGCAG..................................................1912.002.00------2.00------------------------------------------------------------------------------------------
....................................................................................................CTGCCTGTGATGGTTTGGCTGAGTGGA................................................................................................................................2712.002.00-----------------------2.00-------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGCGG.................................................................................................................................2512.0011.00-2.00-----------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGGGG.................................................................................................................................2512.0011.00-1.00--1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................TTGGGAAAGATCTCAGCAAT.........................2011.001.00-------------------------------------------------------------------------------------------1.00-----
....................................................................................................................................TTGTGTTGGAGGTTATGGTAA......................................................................................................2111.001.00----------------------------------1.00--------------------------------------------------------------
.................................................................................................................................TGGTTGTGTTGGAGGTTATGGTAT......................................................................................................241.000.00-------------------------------------------------------------------------------1.00-----------------
......................................................................................................................................................................................TTCTCACTGATGATCATTTGCAGA.................................................2411.009.00---------------------------1.00---------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGG...................................................................................................................................2311.0011.00-1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................ATTGGGAAAGATCTCAGCAAT.........................2111.001.00------------------------------------1.00------------------------------------------------------------
..................................................................................................................................GGTTGTGTTGGAGGTTATGGT........................................................................................................2111.001.00-------1.00-----------------------------------------------------------------------------------------
..................................................................................................................................................................................AACCTTCTCACTGATGATCATTTGCA...................................................2611.001.00---------------------------------------------------------------------------1.00---------------------
..............................................................................................................................AATTGGTTGTGTTGGTCGT..............................................................................................................191.000.00-----------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAAAGATCTCAGCAATACAT.....................2011.001.00-----------------------------------------------------------------------------------------------1.00-
.................................TTTACCCTCATGGCCAG.............................................................................................................................................................................................................1711.001.00-------------------------------1.00-----------------------------------------------------------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGCAGAA................................................2411.0010.00-----------1.00-------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGAGG.................................................................................................................................2411.003.00-1.00-----------------------------------------------------------------------------------------------
...................................................TGAGTTGAGAGGGGCGTTGTGG......................................................................................................................................................................................2211.001.00---------1.00---------------------------------------------------------------------------------------
..........................................................................................................GTGATGGTTTGGCTGAGTG..................................................................................................................................1911.001.00------------------------------------------------1.00------------------------------------------------
................................................................................................................GTTTGGCTGAGTGGAATTGGTTGTG......................................................................................................................2511.001.00------------1.00------------------------------------------------------------------------------------
..................................................................................................ATCTGCCTGTGATGGTTTGGCT.......................................................................................................................................2211.001.00---------------------1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................GCGCATTGGGAAAGATCTCAGC............................2211.001.00----------------------------------------------------1.00--------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGACTG..................................................................................................................................241.000.001.00------------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTCAGT...................................................................................................................................231.000.00-1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCTTCTCACTGATGATCATTTGCAG..................................................2511.001.00--------------------1.00----------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGGGG.................................................................................................................................2411.003.00-----1.00-------------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGAG..................................................................................................................................2311.003.00---1.00---------------------------------------------------------------------------------------------
....................................................................................................CTGCCTGTGATGGTTTGGCTGAGTGG.................................................................................................................................2611.001.00-----1.00-------------------------------------------------------------------------------------------
.......................................................TTGAGAGGGGCGTTGTGT......................................................................................................................................................................................181.000.00----------------------------------------------------------1.00--------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGTGC...................................................................................................................................................................................2611.006.00---------------------------------------------------------------1.00---------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGC....................................................1911.001.00-------------------------------------------------------------1.00-----------------------------------
...............GCCCGACAGTGCAGTCCCC.............................................................................................................................................................................................................................191.000.00----------------1.00--------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGGG..................................................................................................................................2411.0011.00-----1.00-------------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGCGT...................................................................................................................................221.000.001.00------------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAAT...................................................................................................................................231.000.00-------------------1.00-----------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGACTGG.................................................................................................................................241.000.00-1.00-----------------------------------------------------------------------------------------------
................................................................................................................GTTTGGCTGAGTGGAATTGGTTGTGTTGGAG................................................................................................................3111.001.00------------1.00------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGGG..................................................................................................................................2311.003.00----1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AGGCGCATTGGGAAAAGG..................................181.000.00---------------------------------------------------------------------1.00---------------------------
..........................CAGTGAATTTACCCTATGG..................................................................................................................................................................................................................191.000.00-------------------------------------------------------------------------1.00-----------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAAT...................................................................................................................................221.000.00------------1.00------------------------------------------------------------------------------------
.........................................................................................................TGTGATGGTTTGGCTGAGT...................................................................................................................................1911.001.00-------------------------------------1.00-----------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGG...................................................................................................................................2211.003.00----1.00--------------------------------------------------------------------------------------------
....CTCTGCACGCAGCCCGA..........................................................................................................................................................................................................................................1711.001.00---------------------------1.00---------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGAA................................................................................................................................2611.00102.00------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................ACATTTGCCAAGCTGGAGAAGC...2211.001.00-------1.00-----------------------------------------------------------------------------------------
....................................ACCCTCATGGCCAGGCGCA........................................................................................................................................................................................................191.000.00---------------------1.00---------------------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGAAA...............................................2411.008.00--------------------1.00----------------------------------------------------------------------------
.....................................................................................................................GCTGAGTGGAATTGGTTGTGT.....................................................................................................................2111.001.00------------------------------------1.00------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGAATG.............................................................................................................................291.000.00--------1.00----------------------------------------------------------------------------------------
................................................................................................................................TTGGTTGTGTTGGAGGTTATGG.........................................................................................................2211.001.00-----------1.00-------------------------------------------------------------------------------------
..............................................................................................................................AATTGGTTGTGTTGGAGGTTATGG.........................................................................................................2411.001.00--------------1.00----------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTA..................................................................................................................................2411.00410.001.00------------------------------------------------------------------------------------------------
...............................................................................................................GGTTTGGCTGAGTGGAATT.............................................................................................................................1911.001.00--------------1.00----------------------------------------------------------------------------------
................................................AGGTGAGTTGAGAGGGGCG............................................................................................................................................................................................1911.001.00---------------------------------------------------------1.00---------------------------------------
...........................................................................................................TGATGGTTTGGCTGAGTGGAATTGGT..........................................................................................................................2611.001.00---------1.00---------------------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGG......................................................................................................................................................................................2311.001.00---------1.00---------------------------------------------------------------------------------------
................................................................GCGTTGTGGTGGGGTCC..............................................................................................................................................................................171.000.00------------------------1.00------------------------------------------------------------------------
..........................................ATGGCCAGGTGAGTTGA....................................................................................................................................................................................................1711.001.00--------------------------------------------------1.00----------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGTA................................................2311.008.00-----------------------------------------------------------------------1.00-------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGA.....................................................................................................................................................................................2411.001.00---------1.00---------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTGGAA...............................................................................................................................2611.001.00-1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................AATTGGTTGTGTTGGAGGTTATG..........................................................................................................2311.001.00----------1.00--------------------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGTAA...................................................................................................................................................................................2611.003.00-------------------------------------------------------------------1.00-----------------------------
...........................................................................................................................................................................................................AGGCGCATTGGGAAAGATCTCA..............................2211.001.00--------------------------------------------------------1.00----------------------------------------
...............................................................................................................................ATTGGTTGTGTTGGAGGTTATGG.........................................................................................................2311.001.00--------------1.00----------------------------------------------------------------------------------
......................................................................................................................CTGAGTGGAATTGGTTG........................................................................................................................1720.500.50---------------------------------0.50---------------------------------------------------------------
.........................................................................................................................................................................................................................................TTTGCCAAGCTGGAGAA.....1730.330.33------------------------------------------------------------------------------------------------0.33
......................................................................................................................................GTGTTGGAGGTTATG..........................................................................................................1550.200.20----------------------------------0.20--------------------------------------------------------------

Antisense strand
CCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAGGTGAGTTGAGAGGGGCGTTGTGGTGGGGTGATACAGTGTCTTAAGTATATCTGCCTGTGATGGTTTGGCTGAGTGGAATTGGTTGTGTTGGAGGTTATGGTAACAGCCTCTTTCCTGCCCTTTACCACAACCTTCTCACTGATGATCATTTGCAGGCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAA
....................................................................................................((((..(((((.(((......(((((((..(((((((.((((((.((.((.............)))).)))))).)))))))))).))))))).)))))..))))..................................................
................................................................................................97..........................................................................................................205................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT1()
Testes Data. (testes)		SRR073954(GSM629280)
total RNA. (blood)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		mjLiverWT1()
Liver Data. (liver)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059768(GSM562830)
Treg_control. (spleen)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
............................................................AGGGGCGTTGTGGTGGGGTTGT............................................................................................................................................................................. 221.000.00-------------------------1.00-----------------------------------------------------------------------
................................................................................................................................................................................ACAACCTTCTCACTGATTGT........................................................... 201.000.00--------------------------------------1.00----------------------------------------------------------
...............................................................................................................................................................................CACAACCTTCTCACTGACTG............................................................ 201.000.00-------------------------------------------------------------------------------------1.00-----------
......................................................................................................................................GTGTTGGAGGTTATGCCTC...................................................................................................... 1951.000.00-----------------------------------------------------------------------------------1.00-------------
.....................................................................................................................................................................................................................GGAAAGATCTCAGCATGAG....................... 191.000.00--------------------------------------------------------1.00----------------------------------------
...............................................................................................................................................................................CACAACCTTCTCACTGATGGT........................................................... 211.000.00--------------------------------------1.00----------------------------------------------------------
................................................................................................................................................................................ACAACCTTCTCACTGATTGG........................................................... 201.000.00--------------------------------------1.00----------------------------------------------------------
........................................................................................................................................................................CCTTTACCACAACCTTCTC.................................................................... 1911.001.00-----------------------------------------------------------------1.00-------------------------------
.........................................................................................................................................................................................TCACTGATGATCATTTGCAGA................................................. 211.000.00----------------------------------------------------------------------------------------------1.00--