ID: mmu-mir-6899
GENE: Klf7(1)
chr1:64088962-64089211-


(1)
AGO.mut 		(10)
AGO2.ip 		(5)
B-CELL 		(35)
BRAIN 		(6)
CELL-LINE 		(2)
DCR.mut 		(3)
DGCR8.mut 		(9)
EMBRYO 		(5)
ESC 		(4)
FIBROBLAST 		(8)
HEART 		(2)
KIDNEY 		(13)
LIVER 		(2)
LUNG 		(3)
LYMPH 		(15)
OTHER 		(8)
OTHER.mut 		(1)
OVARY 		(2)
PANCREAS 		(3)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(7)
SPLEEN 		(21)
TESTES 		(2)
THYMUS 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CAGCACCAGGGGGCTTTATTTATTATTATTATTATTATTATCATTATTATTATTATTATTTTAAAAGTAATGTTCTATATTAGAGAATGTAGTCTACCAAGAAGGATCTGAGAGGCCATCTGCTGAGACTAGCCACCAGGCAGCAGAACGCAGCGGGCATGAGATCCTTTCTGACCATTGTCCTTCTGTGTCTTCTGCAGGTGAGAAGCCTTACAAGTGCTCATGGGAAGGATGCGAGTGGCGTTTTGCA
...........................................................................................................................................((((.((.((((((.((((((((((.....)))...))).))))..)))))))).))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206940(GSM723281)
other. (brain)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT3()
Liver Data. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206939(GSM723280)
other. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverWT2()
Liver Data. (liver)		mjTestesWT3()
Testes Data. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR206942(GSM723283)
other. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR060845(GSM561991)
total RNA. (brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAG..................................................231610.00610.00187.0046.0034.0034.0025.0031.0023.0020.0022.0017.0014.0022.005.0015.00-14.004.006.002.007.002.003.006.00--8.004.001.004.001.001.001.00-3.003.001.001.003.00--4.001.001.00-1.002.003.002.00------1.00--2.00--------1.002.00-2.00-2.00-1.001.001.00-1.00--1.00-1.00--1.00----------------------1.00------1.00-------1.001.00--1.00--1.00--1.00---1.00------1.00
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGT.................................................241121.00610.00-17.002.002.00-3.003.007.003.001.00--13.002.007.001.006.004.002.001.001.001.00-3.001.00-2.002.00-2.00-3.00--1.00-1.00-3.00--1.001.00-1.001.00------------1.00----1.00---------------2.00----1.00-1.00--1.00-1.001.00------1.00-----1.001.001.00-1.00---1.00---1.001.00--1.001.00--1.00---1.00----------1.00--1.00-
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGA.................................................24183.00610.0012.00-9.00-12.006.002.00-1.00-1.00-2.001.001.002.00--2.001.001.001.00--1.00-1.00-1.001.001.00-6.001.00-4.00------1.00-2.001.00----1.001.00-----------1.00---------1.00--2.00-----------------------1.00----------------------------------1.00-----1.00---
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGC....................................................21167.0067.00--3.009.005.004.006.00-3.006.003.00-2.002.00-3.001.00--2.003.00-1.00-----1.00-2.001.00-2.00--------------------1.001.00---2.00-----------------1.00-----------------1.00--------------1.00---------------1.00------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCA...................................................22122.0022.00--1.001.00--1.00-2.00-3.00--1.002.00---2.001.001.001.00------1.00-----1.00---------------1.00---1.00-----------------------1.00-----------------1.00------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATT.................................................24122.0022.00--2.00--2.001.00---1.001.00--8.001.00--2.00----------2.00------------1.00-------------1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTTCAG..................................................23115.002.0013.00--1.00----------------------------------------------------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCAG..................................................20214.0014.00--2.500.50----0.503.003.00--1.00----0.50--1.000.50-------0.50-------------------------0.500.50---------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAT..................................................23113.0022.001.00--1.003.00---------2.00-1.001.001.00--2.00--------------------------1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGA........................................................................................21111.0011.00------------------------1.00------------1.00-------------1.00--------------1.00-------------1.001.00-------------------1.001.00-1.00---------------1.00---------------1.00--------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATTA................................................2519.0022.00-------9.00-----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTA................................................2519.00610.00--2.00--------------------6.00---------------------------------------------------1.00---------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAG.......................................................................................2217.007.00------------------------1.00--1.00-----------------------1.00---1.00----1.00--------------------1.00----------------------------------1.00----------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTG.....................................................2017.007.00--------------------1.00---2.00-------------------------------1.00--------------------------1.00---1.00-------------------------------------------1.00-------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTT................................................2516.00610.00-----------------2.00-------------1.00--1.00------------1.00------------------------------1.00------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCAGT.................................................2124.5014.00----------0.50---------------------------0.50-------------------------------------------0.500.500.50---1.00-----------------------------------------------------1.00--
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGCGA.............2614.004.00---------------------------1.00---------------2.00-----1.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGCGAGT...........2814.004.00----------------------------------------------------2.002.00-------------------------------------------------------------------------------------------
..................................................................................................................GCCATCTGCTGAGACTAG......................................................................................................................1814.004.00---------------------------------------4.00---------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAA..................................................2314.0022.00----4.00--------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGCG..............2513.003.00-------------------------------------------1.00--------------1.00-----1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................TGAGAAGCCTTACAAGTGCTCATGGGA......................2713.003.00---------------------------2.00-------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATTT................................................2512.0022.00--1.00-------------1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGGGAAGGATGCGAGTGGCGTTTTGC.2612.002.00-------------------------------------------------1.00----------------------------------------------------------------1.00------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTAT...............................................2612.00610.00--------1.00-------------------------------------------------------------------------------------------------------1.00--------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCCG..................................................2312.0067.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGT....................................................2112.007.00------------------------------1.00--------------------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAT.......................................................................................2212.0011.00--------------------------------------------------------------1.00-----------------------------------------------------------------1.00----------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGATT......................................................................................2312.0011.00------------------------------------------------1.00-----------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCT...................................................2212.0067.00--------------------1.00----------------------------------------------------------------------------------1.00-----------------------------------------
...................................................................................................................................................................................................................TACAAGTGCTCATGGGAAGGATGC...............2412.002.00-------------------------------------------------------------2.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCT......................................................1912.002.00------1.00---------1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGC.................................................2412.00610.00-----1.00------------------------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCGG..................................................2312.0067.001.00--------------------1.00---------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTTC....................................................2112.002.00---------1.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAGA......................................................................................2312.002.00--------------------------------------------------------------------2.00----------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATG.........................................................................................2012.002.00----------------------------------------------------------------------1.00-------------------1.00------------------------------------------------------
......................................................................................................................................ACCAGGCAGCAGAACCA...................................................................................................171.000.00--------------------------------------------------------------------------------------------------1.00----------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAATT................................................2511.0022.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAATTT....................................................................................2511.0011.00------------------------------------------------------------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................TGCTCATGGGAAGGATGCGAGTGGC........2511.001.00----------------------------------------------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAAT......................................................................................2311.0011.00------------------------------------------------------------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................ATTGTCCTTCTGTGTCTTCTGCA...................................................2311.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAC..................................................2311.0022.00----------------1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCATTAT...............................................2611.0022.00--------------1.00----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCACT.................................................2411.0022.00--------------------------------------------------1.00----------------------------------------------------------------------------------------------
.................................ATTATTATCATTATTATTATTGGAT................................................................................................................................................................................................251.000.00-----------------------------------------------------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCA...........................................................................................1811.001.00----------------------------------------------------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................................................TTACAAGTGCTCATGGGAAGGA..................2211.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCCG..................................................201.000.00-----------------------------------------------------------------------------------------------------------------------1.00-------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTACAA..................................................2311.002.001.00------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................GAGAGGCCATCTGCTGAGACT........................................................................................................................2111.001.00-----------------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................ATATTAGAGAATGTAGTCTACCAAGA....................................................................................................................................................2611.001.00-----------------------------------------------------------------1.00-------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CAAGTGCTCATGGGAAGGATGCGA.............2411.001.00---------------------------------------------------------------------------------------------1.00---------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGATT...............................................2611.00610.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AGCGGGCATGAGATCCAAA................................................................................191.000.00------------------------------------------------------------------------------------------------------------------------------------1.00------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAGT......................................................................................2311.007.00----------------------------------------------------------------------------------------------1.00--------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTC.......................................................1811.001.00------------------------------------------------1.00------------------------------------------------------------------------------------------------
....................................................TTATTATTTTAAAAGTCGGC..................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------------------------------------------------------------1.00----------
..................................................................................................................................................................................................................TTACAAGTGCTCATGGGAAGGATGCG..............2611.001.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAAT.................................................2411.0022.00------------------------------------------------------------------------------------------------------------------------------------------1.00------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGAA...................................................2211.007.00-------------------------------------------------------1.00-----------------------------------------------------------------------------------------
..................................................................................................AAGAAGGATCTGAGAGGCCATCTGCTGAGACTAGC.....................................................................................................................3511.001.00------------------------------------1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................TTACAAGTGCTCATGGGAAGGATGCGAGT...........2911.001.00----------------------------------------------------------------1.00--------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCCGT.................................................2411.0067.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGA....................................................2111.007.00--------------------------------------1.00----------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTT.....................................................2011.002.00------------------------1.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGTAG...............................................2611.00610.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGGAG..................................................2311.007.001.00------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................ATTGTCCTTCTGTGTCTTCTGC....................................................2211.001.00------1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................GTCCTTCTGTGTCTTCTGCAGTA................................................231.000.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCGTT.................................................2411.0067.00--------------1.00----------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TGCTCATGGGAAGGATGCGAGTGGCGTT.....2811.001.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................AGCAGAACGCAGCGGGCATGT........................................................................................2111.002.00------------------------1.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTGTCCTTCTGTGTCTTCTGCAGAA................................................2511.00610.00--------------------------------------------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTCTGTGTCTTCTGCAGTT................................................2220.5014.00---------0.50---------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CTTCTGTGTCTTCTGCAG..................................................1850.400.40-------------------------------------------------------------------------------------0.40-----------------------------------------------------------

Antisense strand
CAGCACCAGGGGGCTTTATTTATTATTATTATTATTATTATCATTATTATTATTATTATTTTAAAAGTAATGTTCTATATTAGAGAATGTAGTCTACCAAGAAGGATCTGAGAGGCCATCTGCTGAGACTAGCCACCAGGCAGCAGAACGCAGCGGGCATGAGATCCTTTCTGACCATTGTCCTTCTGTGTCTTCTGCAGGTGAGAAGCCTTACAAGTGCTCATGGGAAGGATGCGAGTGGCGTTTTGCA
...........................................................................................................................................((((.((.((((((.((((((((((.....)))...))).))))..)))))))).))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206940(GSM723281)
other. (brain)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT3()
Liver Data. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206939(GSM723280)
other. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverWT2()
Liver Data. (liver)		mjTestesWT3()
Testes Data. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR206942(GSM723283)
other. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR060845(GSM561991)
total RNA. (brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
.............................................................................................................................................AGCAGAACGCAGCGGGCATGAG....................................................................................... 2212.002.00-------------------------------------------------------------------------------------------------1.00-----------------------------------------1.00-----
...................TTATTATTATTATTATTATTATCATTCAGC......................................................................................................................................................................................................... 301.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------------