ID: mmu-mir-6897
GENE: Ugcgl1
chr1:36201047-36201296-


(1)
AGO.mut 		(2)
AGO1.ip 		(12)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(27)
BRAIN 		(5)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(16)
EMBRYO 		(7)
ESC 		(5)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(7)
LIVER 		(3)
LYMPH 		(14)
OTHER 		(1)
OTHER.ip 		(9)
OTHER.mut 		(6)
PIWI.ip 		(2)
PIWI.mut 		(2)
SKIN 		(8)
SPLEEN 		(34)
TESTES 		(3)
THYMUS 		(2)
TOTAL-RNA

Sense strand
TGGAGGCCGTGTATAGCCCAAGGGCGTGTCAGTTCTTAGAGCTAAAAATGTCTTCTTCTCTTAGGTTCGCTTTCAACCCTTAATACAGAAATAGCCAACACCAAGCTTCTACAGACCATCTGAAGCTACAGTGCTGTGCTGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTGTGTTCTTCCCCCAGGCTCTCAGAAGCATGAGGAATTATGATCTCTGGAGGAAGATGGGAAACCC
..........................................................................................................................................(((((((.((...((((.(((((.....(((....)))..))))).))))..)).)))))))..................................................
......................................................................................................................................135.....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		mjLiverWT1()
Liver Data. (liver)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059768(GSM562830)
Treg_control. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR553586(SRX182792)
source: Testis. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		mjLiverWT3()
Liver Data. (liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM416732(GSM416732)
MEF. (cell line)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR206942(GSM723283)
other. (brain)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		mjLiverWT2()
Liver Data. (liver)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTT........................................................................................231108.00108.0011.00--9.0010.005.00-4.004.004.002.00-1.00--5.00-1.003.00-3.001.00-3.00-2.00-2.003.00--1.001.002.00-----3.001.002.002.00---3.00----1.001.00-----1.00-1.00----2.002.00------2.001.00---1.00-------1.00-1.00------------------------1.00--------1.00---1.001.00-1.00-------1.00---
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGT.........................................................................................22153.0053.008.00----2.00-2.001.001.00-5.006.00----1.002.00-2.005.004.00----1.00---2.00--2.00------------------------------------1.00---------1.00--1.001.00----------1.00--1.00-----------------------1.00----1.00-1.00----------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTGTGTTCTTCCCCCAGT.................................................6223.000.00-23.00-------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTT.......................................................................................24119.0019.004.00--2.00---1.00--1.00------2.00---------1.00------1.00--1.00-------------1.00-----------------1.00----------1.00-----------1.00--------1.00-------1.00-------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTGT.........................................................................................23114.0014.003.00--2.001.001.00---2.00-----1.00-1.00----------------------------------------------1.00---------------------------------------------1.00-------------1.00----------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGA..........27113.0013.00--4.00---3.00-----------------3.00-----------------------2.00------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCT...........................................................................................20111.0011.00-------1.00------1.00----------------1.00-1.00--------1.00-----------2.00--1.00------------------1.00--------------------1.00-----------------------1.00-------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTGTT........................................................................................2418.008.00-------------7.00-----------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTG..........................................................................................2118.008.004.00------------------------1.001.00------1.00-------------------------------------------------------1.00---------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTA.......................................................................................2418.00108.003.00---1.00---------1.00-------1.00--------------------------------------------------------------------------------1.00---------------------------1.00---------
..............................................................................................................................................................................................................................ATGATCTCTGGAGGAAGAT.........1918.008.00-----1.00--4.00-3.00----------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TGCTGGGGGCAGTGTCACACGCT...........................................................................................2316.006.001.00--------1.00-1.00-----1.001.00---------------------------------1.00----------------------------------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAAG...............................................216.000.00-------------------6.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGATG........2716.006.00--1.00---------------------1.00----------------------2.00--------------1.00------------------------1.00-----------------------------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCT...........................................................................................2115.005.00--------------------------1.001.00---------------1.00-------------------------------------------------1.00----------------------------------------1.00------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGT.................................................225.000.00-----------------------1.00--------------------------------------------------1.00----2.00-------------------------1.00-----------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGC............................................................................................1915.005.00--------------1.00---------------------1.00------------------------1.00--------1.00--------------------------------------------1.00-------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTAT......................................................................................2514.00108.003.00-------------------------------1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGTCTGTGTTCTTCCCCCATTT................................................224.000.00---2.00----------------------------1.00-----------------------------------------------------------------------------------1.00------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGA..........2014.004.00----------2.00---------------------------------------1.00--------------------------------------------------------------------------1.00---------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTGTTT.......................................................................................2514.004.001.00------------1.00---------------------------------------1.00----------1.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGAAAC..2514.004.00------------------------------1.00----1.00---------1.00------------------------------------------------------------1.00----------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGAT.........2813.003.00--2.00---------------------1.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACG.............................................................................................1813.003.00------------------------------------2.00---------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAAGT..............................................223.000.001.00----2.00---------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTT......................................................................................2513.003.001.00-------------------------------------2.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAA...1813.003.00----------------2.00---------------------------------------------------------------------------------------1.00------------------------------------
....................................................................................................................................................................................GGTCTGTGTTCTTCCCCCAGT.................................................213.000.00--------------2.001.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GGAATTATGATCTCTGGAGGAAGATGT.......2713.003.00--2.00--------------------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAA....2613.003.00--1.00----------------------------------------------1.00-----1.00-------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAACC.2013.003.00----------------1.00------------------------------------------1.00-1.00-------------------------------------------------------------------------------
........................................................................................................................................................................................................................GGAATTATGATCTCTGGAGGAAGATG........2613.003.00--1.00---1.00-----------------------------------------------------------------------------------1.00--------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGATGT.......2813.006.00--1.00---------------------------2.00--------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGA.........................................................................................2213.008.00--------------------------------------------2.00------------1.00-----------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAATT..2812.003.00------1.00----------------------------------------1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGG..............1712.002.00------------------------------------------------------------------------1.00---------------------------1.00----------------------------------------
........................................................................................................................................................................................................................GGAATTATGATCTCTGGAGGAAGATGG.......2712.002.00--1.00--------------------------------------------------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGATG........2912.002.00------1.00-------------------------------------------------------1.00------------------------------------------------------------------------------
.............................................................................................................................................GGGGCAGTGTCACACGCTGTT........................................................................................2112.002.00----------------------------1.00-----------------------------------------------------------------------------------------1.00----------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTAA.......................................................................................2412.0053.00-------------------------1.00-----------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCTGA........................................................................................................202.000.00--------------------------------------------------------------------1.00----------------------------------------------------------------1.00-------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTA........................................................................................2312.0053.00---------------------------------------------------------------2.00-----------------------------------------------------------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGA.................................................222.000.00-----------------------------------------------------------1.00-----------------------------------------------1.00---------------------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGGAAGATGGG......2512.002.00------1.00--------------------------------------------------------------------------------------------------------1.00-----------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAG...........2612.002.00---------------------------------------------1.00----------------------------------1.00------------------------------------------------------------
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGGAAGATGG.......2412.002.00---------------------------------------------------------------------------2.00-----------------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAAC..1912.002.00----------------1.00----------------------------------------------------------------------------------------------------1.00-----------------------
............................................................................................................................................GGGGGCAGTGTCACACGCTGTT........................................................................................2212.002.00----------------------------------------------------------------------------------2.00----------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAGA...............................................212.000.00--------------------------------------------------------2.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GGAGGAAGATGGGAAACC.1822.002.00----------------1.00------------------------------------------------------------------------------1.00---------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGACTG.........................................................................................................191.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGGT........................................................................................2311.008.00------------1.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................ATGATCTCTGGAGGAAGATGGGAAAC..2611.001.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGA.............2411.001.00------------------------------------------------------------------------------------------------------------------------1.00--------------------
.................................................................................................................................................................................................................AGCATGAGGAATTATGATCTCTGGAGGAAG...........3011.001.00------------------------------------------------------------------------------------------------------------1.00--------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAAAT..............................................221.000.00-----------------------------------------------------------------------------------1.00---------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAACCC2111.001.00----------------------------------------------------------------------1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................................TGGAGGAAGATGGGAAAC..1811.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................GTGCTGGGGGCAGTGTCACACGCT...........................................................................................2411.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGAA....2311.001.00--------------------1.00------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TGGAGGAAGATGGGAAACCC2011.001.00-------------------------------------------------------------------------------------------------------------------------------------------1.00-
.......................................................................................................................................................................................................GGCTCTCAGAAGCATGAGGAATT............................2311.001.00------------------------------------------------------------------------------------------------------------------1.00--------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAAGATGGGA.....2411.001.00-------------------------------------------------------------------------------------------1.00-------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTAAA........................................................................................2311.0011.00-------------------------------------------------------------------1.00-------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCTCT........................................................................................................201.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGA.....2211.001.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAAAC..2811.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGT..........2711.002.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
..............................................................AGGTTCGCTTTCAACCCTT.........................................................................................................................................................................1911.001.00----------------------------------------------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAGGAATTATGATCTCTGGAGGAAGA..........2611.001.00------1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGTAA...............................................241.000.00------------------------------------------------------------------------------1.00--------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTGT......................................................................................2511.00108.001.00--------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AATTATGATCTCTGGAGGAAGATGGGAAACC.3111.001.00------------------------------------------------------------------------------------------------------1.00--------------------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAAGATGGGAAA...2611.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTG......................................................................................2511.0019.00--------------------------------------1.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGAT.........2611.001.00------------------------------------------------------------------------------------------------------------------------------------------1.00--
.................................................................................................................................................................TTTATGACGTAAGTCTCACGGA...................................................................221.000.00--------------------------------------------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCTG.........................................................................................................191.000.00--------------------------------------------------------------------1.00------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGAAA...2711.001.00--------------------------------------------------------------------------------------------------1.00------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAAGATGT.......3011.002.00------1.00--------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................TTCTACAGACCATCTATCA.............................................................................................................................191.000.00-----------------------------------------------------------------------------------1.00---------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGCGGA........................................................................................................201.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
......................................................................................................................TCTGAAGCTACAGTGCTGTGCTGGGGGC........................................................................................................2811.001.00---------------------------------------------1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTAC......................................................................................2511.00108.00-------1.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTGGAGGAAGATGGGAAACG.2011.002.00----------------1.00----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ATCTCTGGAGGAAGATGGGAA....2111.001.00------------------------------------------------------------------------1.00--------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGGGGGAAA......................................................................................................221.000.00---------------------------------------------------------------------------------------------------------------------------------------1.00-----
...........................................................................................................................................................................................................................ATTATGATCTCTGGAGGAAGATG........2311.001.00------------------------------------------------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGCATGAGGAATTATGATCT.....................2011.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCTCTGGAGGAA............2511.001.00-----------------------------------1.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAAGATGGGAAT...261.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TGCTGGGGGCAGTGTCACACGCTGTTTTAT....................................................................................3011.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTGTTTTATG...................................................................................2811.001.00---------------------------------------------------------------------1.00-----------------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGTTTT..............................................221.000.00-------------------------------------------1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CATGAGGAATTATGATCTCTGGAGG..............2511.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................GGGGGCAGTGTCACACGCTGTTA.......................................................................................2311.002.00----------------------------------1.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................TACAGTGCTGTGCTGTCC..........................................................................................................181.000.00-----------------------------------------------------------------------------1.00---------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTGGAGGAAGA..........2511.001.00-----------------------------------------------------------------------------------------------------------------------1.00---------------------
..................................................................................................CACCAAGCTTCTACAGACCA....................................................................................................................................2011.001.00-----------------------------------------------------------------------1.00---------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGAATTATGATCAAC...................181.000.00--------------------------------1.00------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGA.................................................191.000.00------------------------------------------------------------1.00--------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AATTATGATCTCTGGAGGTCGT..........221.000.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACACGCTC..........................................................................................2211.005.00---------------------------------------------------------------------------------1.00-----------------------------------------------------------
......................................................................................................................................................................................TCTGTGTTCTTCCCCCAGAG................................................201.000.00----------------------------------------------------------------------------------------------1.00----------------------------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCC.....................................................1811.001.00----------------------------------------1.00----------------------------------------------------------------------------------------------------
................................................................................................................................................................................TCACGGTCTGTGTTCTTCCCCCATA.................................................251.000.00----------------------------------------1.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGGGGCAGTGTCACACGCTCTT........................................................................................2311.0011.00----1.00----------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................ATGATCTCTGGAGGAAGATGAG......221.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................GATCTCTGGAGGAAGATGGGAAAC..2411.001.00-------------------------------------------1.00-------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTATGATCTCTGGAGGAAGATGGGATT...271.000.00--1.00------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................CTGGGGGCAGTGTCACAC..............................................................................................1811.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CGGTCTGTGTTCTTCCCCCAGTACA..............................................251.000.00--------------------------------------------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAATTATGATCTCTTA.................181.000.00------------------------------------------------------------------------------------------------------------------------------------1.00--------
..............................................................................................................................TACAGTGCTGTGCTGGAGG.........................................................................................................191.000.00-----------------------------------------------------------------------------1.00---------------------------------------------------------------
...................................................................................................................................................................................................................................CTCTGGAGGAAGATGGGAAA...2011.001.00---------1.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TGATCTCTGGAGGAAGATGGGAAA...2411.001.00------------------------------1.00--------------------------------------------------------------------------------------------------------------
.........................................................................................................................................GCTGGGGGCAGTGTCACACGCT...........................................................................................2211.001.00----1.00----------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GGAGGAAGATGGGAAACCCACA2220.500.50--------------------------------------------------0.50------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TATGATCTCTGGAGGAA............1720.500.50-----------------------------------0.50---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GGAGGAAGATGGGAAACCC1920.500.50--------------------------------------------------------------------------------------------------------------------------------------------0.50
...................................................................................................................................................GTGTCACACGCTGT.........................................................................................1460.170.17------------------------------------------------------------------------------------0.17--------------------------------------------------------

Antisense strand
TGGAGGCCGTGTATAGCCCAAGGGCGTGTCAGTTCTTAGAGCTAAAAATGTCTTCTTCTCTTAGGTTCGCTTTCAACCCTTAATACAGAAATAGCCAACACCAAGCTTCTACAGACCATCTGAAGCTACAGTGCTGTGCTGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTGTGTTCTTCCCCCAGGCTCTCAGAAGCATGAGGAATTATGATCTCTGGAGGAAGATGGGAAACCC
..........................................................................................................................................(((((((.((...((((.(((((.....(((....)))..))))).))))..)).)))))))..................................................
......................................................................................................................................135.....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		mjLiverWT1()
Liver Data. (liver)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059768(GSM562830)
Treg_control. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR553586(SRX182792)
source: Testis. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		mjLiverWT3()
Liver Data. (liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM416732(GSM416732)
MEF. (cell line)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR206942(GSM723283)
other. (brain)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		GSM475281(GSM475281)
total RNA. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		mjLiverWT2()
Liver Data. (liver)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
...........................................................................................................................AGCTACAGTGCTGTGCT.............................................................................................................. 172.000.00--------------------------2.00------------------------------------------------------------------------------------------------------------------
.......CGTGTATAGCCCAAGT................................................................................................................................................................................................................................... 161.000.00----------------------------------------------------------------------------------------------------------------------------------------1.00----
..........................................................................................................................................................................................TGTTCTTCCCCCAGGCTA.............................................. 181.000.00----------------------------------------------------------------------------------------------------------------1.00----------------------------
....................................................................................................................CATCTGAAGCTACAGTGC.................................................................................................................... 1811.001.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------
.........TGTATAGCCCAAGGGAGT............................................................................................................................................................................................................................... 181.000.00-------------------------------------------------------------------1.00-------------------------------------------------------------------------
.............................................................TAGGTTCGCTTTCAAGGG........................................................................................................................................................................... 181.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------------