ID: mmu-mir-5710
GENE: Dnaja4(2)
chr9:54555990-54556239+


(8)
AGO2.ip 		(1)
B-CELL 		(31)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(4)
ESC 		(5)
FIBROBLAST 		(12)
HEART 		(3)
KIDNEY 		(6)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(11)
OTHER 		(1)
OTHER.ip 		(8)
OTHER.mut 		(3)
PIWI.ip 		(1)
PIWI.mut 		(6)
SPLEEN 		(1)
TDRD1.ip 		(34)
TESTES 		(4)
TOTAL-RNA 		(2)
UTERUS

Sense strand
AAATGACTGGGTAGCCAGGAGTTAGCTCTCCATCTTGGCAGGGACTAGTAGGATAGGTTGGTTTAATGACACATCGCTTCCTGTGGGGTAGGGCGGGTTCTGACCCAACTCTAGTGTTCCGGCCTCCAGAAGAGTCTTGGGACATAGTGTAAGGCAGTGGTCTGGCTAGTCCCACTAACTGGCTCTTTGTCCCTCGGCAGGCAAGAATGTTGTCCACCAGCTGTCAGTAACTCTGGAAGACTTATATAAT
.....................................................................................................................................(((..((((((.((.((.((..(((((.((....))..)))))..)).)).)).))))))..)))....................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553582(SRX182788)
source: Brain. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		mjTestesWT3()
Testes Data. (testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206942(GSM723283)
other. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206940(GSM723281)
other. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR206939(GSM723280)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR059768(GSM562830)
Treg_control. (spleen)		GSM475281(GSM475281)
total RNA. (testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		mjTestesWT1()
Testes Data. (testes)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAG.............................................................................................231163.00163.0015.0013.0020.0012.009.004.004.004.007.001.007.00-7.001.00-3.004.001.00-3.001.002.00-1.001.003.00-1.00--2.00---1.004.003.002.00-1.001.001.00-1.00-1.001.00-1.001.00--1.002.001.001.00-----1.00-2.002.00-----------------1.00--1.00-----------------1.00---1.00----1.00----1.00-1.00----1.00--1.00-------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCA..............................................................................................22136.0036.003.003.00--1.00-1.002.001.00--4.00-1.00-1.00---1.00----5.00-2.00-------------2.00--2.001.00-----1.00-------1.00-----------------------------1.00----------------1.00----------1.00-1.00----------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAG.............................................................................................21129.0029.004.001.00-5.001.00-1.003.003.00--2.00--------2.00------------1.00-----1.00--1.00-----------------1.00----------------------1.00--1.00-----------------------1.00------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGCAG....................................................2228.000.00------1.00---------1.00---2.00-3.002.00-1.00-1.002.00----1.001.00-----------2.00-------1.00-1.00-1.00------2.00------1.00----1.00---------1.00-----1.00--1.00-------------------------1.00------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGC...............................................................................................21122.0022.004.00--1.001.001.00-------------2.00---2.00-1.001.00-1.00--------------------1.001.00-----1.00----1.00-----1.00----------------------------------------------1.00-----------1.00--1.00-----
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGC....................................................22118.0018.006.002.00--2.001.00--2.00-2.00----1.00---------1.00-----------------------------------------------------------------------------------------1.00-------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATGT31115.009.00---------7.00----3.00---1.00------------3.00--------------------------------------------------------------------1.00----------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATA..27114.0014.00---------2.00-----1.00--4.00----------1.00---------------------------2.00--------1.00-----------------------1.00--------------------------------1.00----1.00------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCA...................................................23111.0011.001.002.00-----1.00---4.00-1.00------------2.00------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGT............................................................................................22111.0011.00---1.00--1.001.00--------1.00----1.00-----------2.00-------1.00-------------1.00-----------------------------------------1.00---------------1.00---------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAG..................................................24110.0010.00-3.00--2.004.00--------------------------------------------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAT..................................................2419.0011.002.002.00-----------1.00-------------------------1.00-----2.00-----1.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAAT2919.009.00---------1.00----1.00-----------------------2.00--------3.00----------------------1.00-------------------------------1.00--------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAT.............................................................................................2319.0036.001.00---1.001.002.001.00--1.00------------------------------1.00----------------------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATA....2518.008.00--------------1.00--2.00-----------1.00------------------------------------1.00---1.00------------------------------1.00-------------------1.00-------------
......................................................................................................................................TCTTGGGACATAGTGTAAGG................................................................................................2018.008.00--7.00----------------------------------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCAGT.................................................227.000.00------------------------------1.00--------------------2.00-----------------2.00------1.00-1.00--------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAGT............................................................................................2417.007.00---5.00-----------1.00----------------------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAA.............................................................................................2316.0036.00------2.001.00-----2.00--------------------1.00----------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGG.....................................................2115.005.00----1.00------------1.00----------------------------------1.00---------------------------------------------1.00---------------------1.00--------------
.........................................................................................................................................................................................................CAAGAATGTTGTCCACCAGCTGTCAGT......................2715.005.00----------------------2.00--------------2.00---------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAA.2815.005.00---------2.00-------------------1.00--------1.00--------------------------------------------------1.00---------------------------------------------
...............................................................................................................................................................................TAACTGGCTCTTTGTCCCTGCAG....................................................234.000.00--------------------------------4.00------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCA..............................................................................................2013.003.00---1.00-------------------1.00---------------------------------------------------------1.00-----------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATAT...2613.003.00-----------------1.00-----------1.00---------------------------------------------------------------------1.00-----------------------------------
.......................................................................................................................................CTTGGGACATAGTGTAAGGCAG.............................................................................................2213.003.00-------1.00------------------------------------1.00-----------------------------------1.00------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATT..2712.003.00--------------1.00---1.00--------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTA......2312.002.00------------------------------------------------------------1.00--------------1.00-----------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGA....................................................2212.005.00------------2.00--------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAA.............................................................................................2112.003.00------1.001.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGA............................................................................................2212.0029.00--------------------1.00-------1.00----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATGA3112.009.00------------------1.00------------1.00-------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCAGA.................................................222.000.00-----------------------------------------------------------2.00---------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGCAGA............................................................................................2412.00163.00-1.00---1.00---------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAG.................................................................................................1911.001.00--------------------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................AGTAACTCTGGAAGACTTAT.....2011.001.00------------------------------------------1.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCATT.................................................2511.0011.00-----------------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGTTTT.........................................................................................2511.0011.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGAAG....................................................221.000.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGACATAGTGTAAGGCAG.............................................................................................2011.001.00--------1.00------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TCCACCAGCTGTCAGTAACTCTGGAAGACTT.......3111.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCAGTAA...............................................241.000.00--------------------------------------------------------------------1.00------------------------------------------------------------------
.................................................................................................................................................................................ACTGGCTCTTTGTCCCTGCAG....................................................211.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CAAGAATGTTGTCCACCAGCTGT..........................2311.001.00------------------------------------------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGTCAG.............................................................................................2311.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCTG.....................................................211.000.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGCTCTTTGTCCCTCGGCA...................................................2011.001.00-------------------------------------------------------------------1.00-------------------------------------------------------------------
....................................................................................................................................................................................GGCTCTTTGTCCCTCTCC....................................................181.000.00--------------------------------------------------------------1.00------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGTCAG.............................................................................................211.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGCAA....................................................221.000.00-----------------------------------------------------------------------1.00---------------------------------------------------------------
............................................................................................................................................................................................................................CTGTCAGTAACTCTGGA.............1711.001.00------------------------------------------------1.00--------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTGCCG....................................................221.000.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GTCAGTAACTCTGGAAGACTTAT.....2311.001.00------------------------------------------------------------------------------------1.00--------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGT....................................................2211.005.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCTTGGGACATAGTGTAAGGTAG.............................................................................................2311.008.00-------------------------------------------------------------------------------1.00-------------------------------------------------------
..............................................................................................................................................................................................................................GTCAGTAACTCTGGAAGACTTATATA..2611.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................GGCGGGTTCTGACCCCGC.............................................................................................................................................181.000.00--------------------------------------------------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGCTGTCAGTAACTCTGGAAGACT........2411.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCTGAA...................................................231.000.00-------------1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGCAAGAATGTTGTCCACCAGCT............................2311.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGCAGAA...........................................................................................2311.0029.00-------------1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATT3011.009.00--------------------------------------------------------------------------------------------------------1.00------------------------------
....................................................................................................................................AGTCTTGGGACATAGTGTAAG.................................................................................................2111.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCG......................................................2011.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------------
..................................................................................GTGGGGTAGGGCGGGGCAC.....................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------------------------------------1.00---------
.................................................................................................................................................................................................................................AGTAACTCTGGAAGACTTATAT...2211.001.00--------------------------------------------------------------------1.00------------------------------------------------------------------
.............................................................................................................................................................................................................................TGTCAGTAACTCTGGAAGACTTATATAATGC3111.009.00--------------1.00------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AGAATGTTGTCCACCAGCTGTCAGT......................2511.001.00-------------------------------------------------------------------------------------------1.00-------------------------------------------
................................................................................................................................................................................................................................CAGTAACTCTGGAAGACTTATATAAT2611.001.00-----------------------------------------------------------------------------------------------1.00---------------------------------------
.......................................................................................................................................CTTGGGACATAGTGTAAGACAG.............................................................................................221.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GTCAGTAACTCTGGAAGAC.........1911.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................AAGAATGTTGTCCACCAGCTGTCAGT......................2611.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CAGTAACTCTGGAAGACTTATATAATGGT2911.001.00---------1.00-----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CAGTAACTCTGGAAGACTTATAT...2311.001.00------------------------------------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AATGTTGTCCACCAGCTGTCAGTAACTCTG...............3011.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAGC.................................................2511.0010.00--------------------------------------------------------------------------------------------1.00------------------------------------------
.......................................................................................................................................CTTGGGACATAGTGTAAGGCAGT............................................................................................2311.001.00-------------------------------------------------------------------------------------------------------------1.00-------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAAT.................................................2511.0011.00-------------------------------------------------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCT...................................................2311.0018.00-------------1.00-------------------------------------------------------------------------------------------------------------------------
........................................................................ATCGCTTCCTGTGGGCATC...............................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------------------1.00----------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGT.....................................................2111.001.00------------------------------1.00--------------------------------------------------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTTCAG....................................................221.000.00------------------------------------------------------------------------1.00--------------------------------------------------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTTGGC....................................................221.000.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................AGTAACTCTGGAAGACTTATATAAT2511.001.00---------------------------------------------------------------------------------------------------------------1.00-----------------------
................................................................................................................................................................................AACTGGCTCTTTGTCCCTCGGCAGATT...............................................2711.0010.00------------------------------------1.00--------------------------------------------------------------------------------------------------
........................................................................................................................................TTGGGACATAGTGTAAGGC...............................................................................................1911.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGCTGTCAGTAACTCTGG..............1820.500.50----------------------------------------------------0.50----------------------------------------------------------------------------------
..................................................................................................................................................................................................................TGTCCACCAGCTGTCAG.......................1720.500.50-----------------------------------------------------------------------------------------------------------------------------------0.50---
.......................................................................................................................................................................................................................................TCTGGAAGACTTATAT...1630.330.33------------------------------------------------------------------------------------------------------------------------------------0.33--
.................................................................................................................................................................................................................................AGTAACTCTGGAAGAC.........1660.170.17---------------------0.17-----------------------------------------------------------------------------------------------------------------
..............................................AGTAGGATAGGTTGG.............................................................................................................................................................................................1560.170.17--------------------------------------------------------------------------------------------------------------------------------------0.17

Antisense strand
AAATGACTGGGTAGCCAGGAGTTAGCTCTCCATCTTGGCAGGGACTAGTAGGATAGGTTGGTTTAATGACACATCGCTTCCTGTGGGGTAGGGCGGGTTCTGACCCAACTCTAGTGTTCCGGCCTCCAGAAGAGTCTTGGGACATAGTGTAAGGCAGTGGTCTGGCTAGTCCCACTAACTGGCTCTTTGTCCCTCGGCAGGCAAGAATGTTGTCCACCAGCTGTCAGTAACTCTGGAAGACTTATATAAT
.....................................................................................................................................(((..((((((.((.((.((..(((((.((....))..)))))..)).)).)).))))))..)))....................................................
.................................................................................................................................130...................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553582(SRX182788)
source: Brain. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		mjTestesWT3()
Testes Data. (testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206942(GSM723283)
other. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206940(GSM723281)
other. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR206939(GSM723280)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR059768(GSM562830)
Treg_control. (spleen)		GSM475281(GSM475281)
total RNA. (testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		mjTestesWT1()
Testes Data. (testes)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
.................................................................................................................................................................................ACTGGCTCTTTGTCCGAGA...................................................... 191.000.00--------------------------------------------------------------------------1.00------------------------------------------------------------
...........................CTCCATCTTGGCAGGGACTAGTAGGACGC.................................................................................................................................................................................................. 291.000.00------------------------------------------------------------------------------------------------------------1.00--------------------------
...................................................................................................................GTTCCGGCCTCCAGAATA..................................................................................................................... 181.000.00----------------------------------1.00----------------------------------------------------------------------------------------------------
........................GCTCTCCATCTTGGCAGG................................................................................................................................................................................................................ 1820.500.50----------------------------------------------------------------------------------------------------------------------------------0.50----
.......................................................GGTTGGTTTAATGAC.................................................................................................................................................................................... 1540.250.25-------------------------------------------------------------------------0.25-------------------------------------------------------------
........................................................................................................................................................................................................................CCAGCTGTCAGTAACTCT................ 1840.250.25-------------------------------------------------------------------------------------------------------------------------------------0.25-
.........................................................................................AGGGCGGGTTCTGA................................................................................................................................................... 14100.100.10--------------------------------------------------------------------------0.10------------------------------------------------------------