ID: mmu-mir-3547
GENE: Baiap3(23)
chr17:25382446-25382633-


(1)
AGO.mut 		(2)
AGO1.ip 		(18)
AGO2.ip 		(2)
AGO3.ip 		(1)
B-CELL 		(39)
BRAIN 		(5)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(13)
EMBRYO 		(4)
ESC 		(4)
FIBROBLAST 		(2)
HEART 		(2)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(2)
LYMPH 		(13)
OTHER 		(9)
OTHER.mut 		(1)
OVARY 		(1)
PIWI.ip 		(1)
PIWI.mut 		(5)
SKIN 		(7)
SPLEEN 		(20)
TESTES 		(4)
THYMUS 		(10)
TOTAL-RNA 		(2)
UTERUS

Sense strand
AAGACCTCCACCGGGAGGCCCACACTGTGACAGCACACCTGACTTCCAAGGTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCCCTCTCTCAGATGGTGGCCGACATCAGGAAGTACATACAGCACATCAGCCTGTCCCCTGA
...................................................((((.((((((((((.((.((((((.........((.((((((.......))))))))....)))))).)).))))))))))))))...................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR206940(GSM723281)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR206941(GSM723282)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR206942(GSM723283)
other. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		mjLiverWT1()
Liver Data. (liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		mjTestesWT1()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		GSM416732(GSM416732)
MEF. (cell line)		mjTestesWT4()
Testes Data. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		mjTestesWT2()
Testes Data. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR060845(GSM561991)
total RNA. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
.....................................................................................................................TGAGCACCACCCCTCTCTCAGT.................................................2215684.001148.00676.00395.00596.00457.00348.00344.00287.00290.00155.00150.00127.00165.00196.00141.00128.00119.0062.0067.0069.0079.0067.0046.0042.0051.0041.0031.0031.0021.0031.0021.0012.0015.0012.009.0012.0016.0014.0017.0013.0011.009.0013.0015.005.0011.0011.001.001.0010.0011.0010.0010.0010.009.008.007.006.008.004.008.005.006.006.006.00-7.007.004.005.005.005.005.002.003.002.002.004.003.004.003.003.002.003.00-3.002.00-3.003.003.002.003.002.001.002.002.00--2.00-2.002.002.002.002.00-2.002.001.00-2.002.001.001.001.00-1.00---1.00-1.001.001.001.001.001.00----1.00-1.00-1.00---
.....................................................................................................................TGAGCACCACCCCTCTCTCAG..................................................2111148.001148.00171.00192.0015.00114.00174.0039.00108.005.0079.0034.0068.0016.006.003.004.005.00-9.0010.001.006.0011.0018.00-1.003.002.002.002.00-6.003.005.006.00--2.00--4.004.00--3.001.00-1.001.001.00----2.00----3.00-------------------------------1.00------2.00-------2.00--1.00----------1.00---------------1.00----
.....................................................................................................................TGAGCACCACCCCTCTCTCAGA.................................................221317.00317.0051.0047.005.0019.0029.0010.0024.0010.0019.0012.006.004.001.003.002.00--3.003.002.001.006.004.00--5.003.006.00--1.001.00-2.00-1.001.001.00--2.001.00-2.00--1.0011.00--------1.00---1.00-1.002.00--------2.001.00-1.00-----1.00-3.00--3.00------1.00---------------------1.00------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCA...................................................201169.00169.0013.0016.007.004.0011.0026.008.003.0012.0012.004.007.001.003.001.00--5.001.003.001.007.003.002.00-1.001.003.00--3.001.00-1.00-----1.001.001.00--1.001.001.00-1.00---------1.00------------------------------------------------------------------------1.00--------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGC.................................................22185.001148.009.005.002.0015.009.007.008.001.001.003.002.001.001.00---1.003.00----4.00-1.001.001.001.00----3.001.00--1.00--------------1.00---1.00--1.00-1.00-------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCGT.................................................22155.0044.00--2.00--------2.00--2.003.0041.00----2.00---1.00---------------------------------------------------1.00----------------------------------------1.00---------------------
.....................................................................................................................TGAGCACCACCCCTCTCTC....................................................19144.0044.003.002.007.00-2.004.001.002.001.006.001.003.001.00----4.00-1.00-2.002.001.00-1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTA................................................23143.001148.004.002.00-4.002.005.002.001.001.002.002.00----1.00-1.003.00--1.001.00----------1.001.00--------1.00--1.00---1.00-----1.00----1.00------------1.00----------1.00--------------------------1.00-----------------1.00---------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTT................................................23134.001148.00---1.001.007.001.00-1.001.00-2.00-1.003.001.00-3.00--------1.00-1.001.00--------------1.001.001.00--1.001.00-1.00-1.00--------------------1.00-----------------------------------------------------1.00----------
....................................................................................................................CTGAGCACCACCCCTCTCTCAGT.................................................23127.0014.004.002.002.003.001.002.003.00--4.002.001.00------1.00---------------1.00------1.00--------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAGT.................................................24123.009.005.00----2.00----1.001.00-----------------2.00----3.00---3.00-------1.00-------1.001.001.001.00----1.00-----------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCATT.................................................22116.00169.001.001.00-3.00-2.00--6.00-----1.001.001.00---------------------------------------------------------------------------------------------------------------------------
....................................................................................................................CTGAGCACCACCCCTCTCTCAG..................................................22114.0014.00-3.00-1.003.002.00--1.001.001.001.00--------------------------------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAT..................................................21112.00169.00-2.00-2.00----6.00------------------1.00------------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTTAGT.................................................22112.005.001.001.00-1.00-1.001.001.001.001.00--1.001.00----1.00-------------------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................GAGCACCACCCCTCTCTCAGT.................................................21112.004.001.00-3.00------2.00-----------1.00---------------------3.00-------------------------------------------------------2.00----------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAG..................................................2319.009.001.004.00------2.00----------------1.00--------------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGG.................................................2218.001148.00-2.00-----1.001.00-------1.00-----1.001.00----------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTAA...............................................2417.001148.001.001.00--1.00-----1.00----1.00------------------------------1.00---------------------------------------------------------------------------------1.00-----------
.....................................................................................................................TGAGCACCACCCCTCTCTCGGT.................................................2216.0044.001.00-----1.001.00------------2.00------------------------1.00----------------------------------------------------------------------------------------------
....................................................................................................................CTGAGCACCACCCCTCTCTCA...................................................2115.005.00-1.00-------1.00-1.00---------1.001.00---------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCT.....................................................1815.005.00------3.00----1.00-----1.00--------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGA.................................................................................................................2515.005.00--------------2.00-----------1.00--------2.00--------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCCCTCTCTCAGT.................................................895.000.00----------------------------------------------------------------5.00---------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAA..................................................2115.00169.00---1.00-2.00---------1.00-1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAGA.................................................2415.005.00--------1.002.00------------------------1.00--------------------1.00------------------------------------------------------------------------------------
....................................................................................................................CTGAGCACCACCCCTCTCTCAGA.................................................2315.005.00-2.00----1.00--1.00-------1.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTAAGT.................................................2214.005.00---------1.00----------2.00----------------------------------------------1.00------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCA...................................................2214.004.00-2.00----2.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCTGT.................................................2214.0044.00--1.00--1.00----------2.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................................GAGCACCACCCCTCTCTCAG..................................................2014.004.00---------4.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCAGT...................................................2023.502.00-2.000.50----0.500.50-----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGCA................................................2313.001148.002.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTC................................................2313.001148.00-1.00--------------1.00-----------------------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTC....................................................2113.003.00-1.00------1.00-1.00---------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGG...................................................................................................................2313.003.00-1.00-1.00--1.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGAA................................................2313.00317.00------2.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTTT...............................................2413.001148.00-----1.00-----1.00-------------------------------------------------1.00------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCGTT................................................2313.0044.00----------------2.00---------------------------------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTC......................................................1722.002.000.50-0.50---0.50------------0.50------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAAT.................................................2212.00169.00--------------------1.00---------------------------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCGC.................................................2212.0044.00-----1.00----------1.00---------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGACTGT.............................................................................................................2912.002.00-----------------1.001.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTG................................................2312.001148.00-1.00-1.00----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTAT...............................................2412.001148.00-----1.00--1.00-----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAGC.................................................2412.009.00-----------------------------1.00----1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCGA.................................................2212.0044.00-1.00--------------1.00---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAC..................................................2112.00169.00---------1.00--------------1.00-------------------------------------------------------------------------------------------------------------------
......................................................................................................................GAGCACCACCCCTCTCTCA...................................................1912.002.00---------1.00-----------1.00----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................AGCACCACCCCTCTCTCAGT.................................................202.000.00-----1.00---------1.00----------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCCCTCTCTCAGA.................................................8912.002.00----------------------------------------------------------------2.00---------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAAA.................................................2212.00169.00-----------------2.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTGT...............................................2411.001148.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGTA................................................................................................................2611.001.00------------------------1.00-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCC...................................................2011.0044.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTAAGA.................................................241.000.00----------------------------------------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCATT.................................................2411.004.00-1.00------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................CTGAGCACCACCCCTCTCT.....................................................1911.001.00---------1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTTT...................................................2011.005.00-------1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAAG.................................................2411.004.00------1.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAAG.................................................2211.00169.001.00-------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTGAGT.................................................2211.005.00---------------------------------------------------------------------------------------------------------------------1.00----------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGG..................................................................................................................2411.001.00---1.00----------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................GAGCACCACCCCTCTCTCATA.................................................2111.002.00-------------------------------------------------------------------------------------------------------------1.00------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCATA...................................................................................................................2311.001.00-------------------------------------------------------------------------------------------------------------------------1.00------------------
......................................................................................................................GAGCACCACCCCTCTCTCAGC.................................................2111.004.00------------------1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCG...................................................2011.0044.00-------1.00------------------------------------------------------------------------------------------------------------------------------------
.......................................................AAGAGGGGTGGGGCCCGGGACTGTACCCA........................................................................................................2911.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00--
......................................................................................................................GAGCACCACCCCTCTCTCCGT.................................................211.000.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGGT................................................2311.001148.00---1.00----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCACTA................................................2311.00169.00-1.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCT...................................................2011.0044.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTA....................................................1911.005.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCTT.................................................2211.0044.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
...................................................TGGGAAGAGGGGTGGGGCCCGGGACTGTA............................................................................................................2911.001.00-------------------------------------------------------------------------------------------------------------------------------------1.00------
.....................................................................................................................TGAGCACCACCCCTCTCTAAA..................................................2111.005.00---------------------------1.00----------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCAGA...................................................2021.002.00-0.50------------0.50-----------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCC......................................................................................................................2011.001.00-----------------------------------------------------------------------------------------------------------------1.00--------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGAT................................................2311.001.00----------------------------------------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................GAGCACCACCCCTCTCTCAGA.................................................2111.001.00-------------------------------------------------------------------------------------------------------------1.00------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGACTGTA............................................................................................................3011.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAA..................................................2311.004.00-1.00------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................AGCACCACCCCTCTCTCAGA.................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCACT.................................................2211.00169.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTTA...................................................2011.005.00-------------------------------1.00------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCGTA................................................2311.0044.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCC...........................................................7911.001.00----------------------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTAG...............................................2411.001148.001.00-------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCATAAG...............................................2411.00169.00-------------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCG....................................................................................................................2211.001.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGAGT...............................................2411.00317.00-------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGCCCGGGAT................................................................................................................2611.005.00----1.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................TCTGAGCACCACCCCTCTCTCAGTAT...............................................2611.009.00-----1.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCCG..................................................2111.0044.00---------------1.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCTCAGTTG...............................................2411.001148.001.00-------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................GAGCACCACCCCTCTCTCG...................................................191.000.00------1.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCGCA...................................................2020.502.00-----------------------0.50--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCAG....................................................1920.502.00-0.50------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGAGCACCACCCCTCTCAGTA..................................................2120.502.00-0.50------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGAAGAGGGGTGGGGC.......................................................................................................................1920.500.50------------------------------------------------------------------------------------------------------------------------------------------0.50-
.....................................................................................................................TGAGCACCACCCCTCTCCAGT..................................................2120.502.00--0.50-----------------------------------------------------------------------------------------------------------------------------------------
......................................................................CGGGACTGTACCC.........................................................................................................13100.300.30-------------------------------------------------------------------------------------------------------------------------------------------0.30

Antisense strand
AAGACCTCCACCGGGAGGCCCACACTGTGACAGCACACCTGACTTCCAAGGTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCCCTCTCTCAGATGGTGGCCGACATCAGGAAGTACATACAGCACATCAGCCTGTCCCCTGA
...................................................((((.((((((((((.((.((((((.........((.((((((.......))))))))....)))))).)).))))))))))))))...................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR206940(GSM723281)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR206941(GSM723282)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR206942(GSM723283)
other. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		mjLiverWT1()
Liver Data. (liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		mjTestesWT1()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		GSM416732(GSM416732)
MEF. (cell line)		mjTestesWT4()
Testes Data. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		mjTestesWT2()
Testes Data. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR060845(GSM561991)
total RNA. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
...............................................................................................TTCTTGAGTCCTGCTCTTGTTCTGAGCA................................................................. 2811.001.00------------------------------------------------------------------------------------------------1.00-------------------------------------------
.............................................................................................TATTCTTGAGTCCTGCTCTTGTTCTGA.................................................................... 2711.001.00------------------------------------------------------------------------------------------------1.00-------------------------------------------
................................................................................................................................................GCCGACATCAGGAAGTACATACAGCACA................ 2811.001.00------------------------------------------------------------1.00-------------------------------------------------------------------------------