ID: mmu-mir-3104
GENE: Brsk2(11)
chr7:149177945-149178194+


(14)
AGO2.ip 		(37)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(7)
EMBRYO 		(1)
LIVER 		(1)
LUNG 		(5)
OTHER 		(4)
OTHER.mut 		(8)
TESTES 		(1)
THYMUS 		(6)
TOTAL-RNA

Sense strand
AGCCCCAGGGACCCTGGATACATACTGGGTGGTGACAGCCAAGGTCAGCAGGATGGCCCCAGGACACATCTGTGCCTCTAGAGACCTTCCTCGGCCTTGGAGCTCCGGGTCAGGACCCCACGCTTCCCGGAAAGGCCAACTAGGGGGCAGGAGCCGGAGCCCTCTGCTGAACTGACAGACGCTCTGCTTTGCTCCCCCAGATCTCGATCCATCAGTGGTGCGTCCTCAGGCCTTTCTACAAGTCCACTCA
..............................................................................................................................................(((((..((((.((((((..((((.........)))).))))))))))...)))))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR037935(GSM510473)
293cand3. (cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR206940(GSM723281)
other. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR060845(GSM561991)
total RNA. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGT.................................................23154.0017.008.00-1.002.003.007.003.002.002.004.001.00-1.00---1.00-----2.003.001.002.002.00--1.00--------1.00------1.00---1.00--1.00-1.001.00-----1.00-1.00----
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGA.................................................23136.0036.009.00-2.003.00--1.001.00--3.004.00--1.003.00-1.00-2.00--------1.00-----1.001.00--------1.00---1.00-------1.00-----------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAG..................................................22117.0017.006.00-1.002.001.00---3.00-1.00-----2.00----1.00----------------------------------------------
............................................................................................................................................TAGGGGGCAGGAGCCGGAGCCCTCT.....................................................................................2517.007.00--1.001.00--1.00-----------1.00-2.00---------------------------------------1.00-------
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCCAGT.................................................2416.003.00--1.00-2.00---1.00---------1.00--------------------------------1.00----------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGTT................................................2415.0017.001.004.00------------------------------------------------------------------
...................................................................................................................................................................................CGCTCTGCTTTGCTCCCCCAGT.................................................225.000.001.00--------1.00--1.00---1.00-----1.00---------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGAT................................................2414.004.00-4.00------------------------------------------------------------------
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCCAGA.................................................2414.004.00--------------1.001.00--1.00----------------------------------------1.00--------
..............................................................................................................................................GGGGGCAGGAGCCGGAGCCCTCT.....................................................................................2313.003.00--------------------1.00---------2.00-------------------------------------
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCCAG..................................................2313.003.001.00------1.00---------1.00--------------------------------------------------
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCCA...................................................2213.003.00---1.00----------1.00-------------------------1.00---------------------------
......................................................................................................................................................................................TCTGCTTTGCTCCCCCAGATCCC.............................................232.000.00-2.00------------------------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGAATT..............................................2612.0036.00-----------------2.00--------------------------------------------------
.....................................................................................................................................................................................................CAGATCTCGATCCATCAGT..................................1912.002.00-------------1.00----------------------------------------------------1.00-
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCCAA..................................................2312.003.001.00------1.00------------------------------------------------------------
......................................................................................................................................................................................TCTGCTTTGCTCCCCCAGTTCC..............................................222.000.00---------------------------2.00----------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAT..................................................222.000.00------------------------1.00---------------------------------------1.00---
............................................................................................................................................TAGGGGGCAGGAGCCGGAGC..........................................................................................2012.002.00------------1.00-----------1.00-------------------------------------------
...................................................................................................................................................................................CGCTCTGCTTTGCTCCCCCAGA.................................................2212.002.00--2.00-----------------------------------------------------------------
.............................................................................................................................................AGGGGGCAGGAGCCGGAGCCCTCT.....................................................................................2411.001.00---------------------------------1.00----------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGTA................................................2411.0017.00--1.00-----------------------------------------------------------------
.........................................................................................................................GCTTCCCGGAAAGGCTGT...............................................................................................................181.000.00--------------------------------1.00-----------------------------------
..............................................................................................................................................GGGGGCAGGAGCCGGCGAC.........................................................................................191.000.00-----------------------------------------1.00--------------------------
............................................................................................................................................TAGGGGGCAGGAGCCGGAGCA.........................................................................................2111.002.00-----------------------------------------------1.00--------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAA..................................................221.000.00--1.00-----------------------------------------------------------------
...........................................................................................................................................CTAGGGGGCAGGAGCCGGAGC..........................................................................................2111.001.00------------------------------------------1.00-------------------------
............................................................................................................................................TAGGGGGCAGGAGCCGGAGCCCTT......................................................................................241.000.00-1.00------------------------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGTTT...............................................2511.0017.00---------------------1.00----------------------------------------------
..................................ACAGCCAAGGTCAGCAGGA.....................................................................................................................................................................................................1911.001.00-1.00------------------------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGAAT...............................................2511.0036.00--1.00-----------------------------------------------------------------
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCTTT..................................................231.000.00--1.00-----------------------------------------------------------------
.................................................................................................................................................................................GACGCTCTGCTTTGCTCCCCCAGTT................................................2511.003.00------1.00-------------------------------------------------------------
.....................................................................................................................................................................GCTGAACTGACAGACGCTCTGCT..............................................................2311.001.00----------------------------1.00---------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCGAGA.................................................231.000.00--------------1.00-----------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGAA................................................2411.0036.001.00-------------------------------------------------------------------
.....................................................................................................................................................................................................CAGATCTCGATCCATCT....................................171.000.00-------------1.00------------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCCGA.................................................2311.001.00-----------1.00--------------------------------------------------------
.....................................................................................................................................................................................................CAGATCTCGATCCATCAGTGGT...............................2211.001.00-------------1.00------------------------------------------------------
......................................................................................................................................................................CTGAACTGACAGACGC....................................................................1611.001.00-----------------------------------------------------------------1.00--
.......................................CAAGGTCAGCAGGATGGCCCCAGGACA........................................................................................................................................................................................2711.001.00--1.00-----------------------------------------------------------------
.....................................................................................................................................................................................................CAGATCTCGATCCATCAGTGGTGC.............................2411.001.00---------------------1.00----------------------------------------------
.......................................CAAGGTCAGCAGGATGGCCC...............................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------
...........................................................................................................................................................................................................TCGATCCATCAGTGGTGCGTCCTCA......................2511.001.00-------------------------------------1.00------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAGC.................................................2311.0017.00-------------------1.00------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCC....................................................2011.001.00----1.00---------------------------------------------------------------
...........................................................................................................................................................................................................................GCGTCCTCAGGCCTTTCTACAAGTCCACT..2911.001.00-------1.00------------------------------------------------------------
.....................................................................................................................................................................GCTGAACTGACAGACGCTCTTC...............................................................221.000.00--------------------------------------------------------------1.00-----
......................................................................................................................................................................................TCTGCTTTGCTCCCCCAGTACT..............................................221.000.00-----------------------------1.00--------------------------------------
.....................................................................................................................................................................................................CAGATCTCGATCCATCAGTGGTGCGT...........................2611.001.00-------------1.00------------------------------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTCCCCCAAT.................................................231.000.00--1.00-----------------------------------------------------------------
........................................................................................................................................................GCCGGAGCCCTCTGC...................................................................................1570.290.29-------------------------------------------------------------------0.29

Antisense strand
AGCCCCAGGGACCCTGGATACATACTGGGTGGTGACAGCCAAGGTCAGCAGGATGGCCCCAGGACACATCTGTGCCTCTAGAGACCTTCCTCGGCCTTGGAGCTCCGGGTCAGGACCCCACGCTTCCCGGAAAGGCCAACTAGGGGGCAGGAGCCGGAGCCCTCTGCTGAACTGACAGACGCTCTGCTTTGCTCCCCCAGATCTCGATCCATCAGTGGTGCGTCCTCAGGCCTTTCTACAAGTCCACTCA
..............................................................................................................................................(((((..((((.((((((..((((.........)))).))))))))))...)))))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR037935(GSM510473)
293cand3. (cell line)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR206940(GSM723281)
other. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR060845(GSM561991)
total RNA. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
.......................................................................................................................................................................................................................................CTTTCTACAAGTCCACCAGA 201.000.00---------------------------------------1.00----------------------------
.......................................................................................................................................................................................................................................CTTTCTACAAGTCCACCT. 181.000.00---------------------------------------------------------1.00----------
.....................................................................................................................................................................GCTGAACTGACAGACGCTCTGCTTTGCTCCC...................................................... 3111.001.00----------------------------------------------------------1.00---------
........................................................................................................................................................GCCGGAGCCCTCTGCTGAACTG............................................................................ 2211.001.00-1.00------------------------------------------------------------------
............................................................................................................................................................................TGACAGACGCTCTGCTTTGCTCCCCC.................................................... 2611.001.00-1.00------------------------------------------------------------------
......................................................................................................................................................................................................AGATCTCGATCCATCCGA.................................. 181.000.00------------1.00-------------------------------------------------------
..........................................................................................................................................................................................CTTTGCTCCCCCAGATCTCGATCCA....................................... 2511.001.00-------------------------------------------1.00------------------------
...............................................................................................................................................................................................................TCCATCAGTGGTGCGTCCTCAGGCCTTTCTA............ 3111.001.00-------------------------------1.00------------------------------------
..............................................................................................................................................................GCCCTCTGCTGAACTGATGA........................................................................ 201.000.00------------------------------------1.00-------------------------------
..................................................................................................................................................................................ACGCTCTGCTTTGCTGGA...................................................... 181.000.00--------------------------------------------------1.00-----------------
.............................................................................................................................................................................................................................GTCCTCAGGCCTTTCTAC........... 1811.001.00----------------------------------------------1.00---------------------
................................................................................................................................................................................................................CCATCAGTGGTGCGTCCTCAGGCCTTTCTAT........... 311.000.00-------------------------------1.00------------------------------------
..............................................................................................................................................................................................................................TCCTCAGGCCTTTCTATTCA........ 201.000.00-----------------------------------------------------1.00--------------