ID: mmu-mir-1963
GENE: Ryr1(71)
chr7:29868604-29868853-


(5)
AGO2.ip 		(2)
B-CELL 		(15)
BRAIN 		(7)
EMBRYO 		(4)
ESC 		(1)
KIDNEY 		(7)
OTHER 		(1)
OTHER.mut 		(3)
TESTES 		(5)
TOTAL-RNA

Sense strand
CTCAAATCCTACTGCACTGAGGGATCTTAAGGAAGGAGGGCAACCAGACAGGAATGGCACTGTGCCCATGGGAGGAGCCATATCAATCACTGCTGGAATGCTCCTGGTGTGTGCAGGAGAAGCAGGTCTGGATAGTAGGGCTGGGACGAGATCATGAGGCCTTCCTGGCCACTGGGAAGGACTCGGCCCTTGTCCCGCAGGTGATGGGTGTCTTTAGTGACGAGGATGTGAAGCAGATCCTGAAGATGAT
...........................................................................................................................................((.((((((((....((((.(((((((((...))))))))).))))...))))))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		mjTestesWT4()
Testes Data. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR206942(GSM723283)
other. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206941(GSM723282)
other. (brain)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
.............................................................................................................................................TGGGACGAGATCATGAGGC..........................................................................................19122.0022.0020.00--1.00-1.00--------------------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTC......................................................................................23115.0015.003.002.00--1.002.001.003.00-1.00------------1.00-------1.00-------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTT.......................................................................................2219.009.001.001.00-1.002.001.001.00-----------1.00----------------1.00--------
........................................................................................................................................................................................................................GTGACGAGGATGTGAAGCAGA.............2118.008.00--8.00-----------------------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCT........................................................................................2116.006.002.00---1.00------1.00------1.00---------------------1.00---
.............................................................................................................................................TGGGACGAGATCATGAGGCC.........................................................................................2016.006.003.00-----2.00-----------------------------1.00-------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTT......................................................................................2315.009.002.001.00-----1.00-1.00----------------------------------
............................................................................................................................................................................................................................CGAGGATGTGAAGCAGGAGT..........205.000.00--------2.00-----------------------1.00----1.001.00-----
............................................................................................................................................CTGGGACGAGATCATGAGGCCTTC......................................................................................2414.004.001.001.00-2.00----------------------------------------
..........................................................................................................................................GGCTGGGACGAGATCATGAGGCCT........................................................................................2413.003.00--------2.00--------------1.00--------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCC.........................................................................................2113.003.001.00--1.00-----1.00----------------------------------
...................................................................................................................................................................................GACTCGGCCCTTGTCCCGCAG..................................................2113.003.003.00-------------------------------------------
................................................................................................................................................................................AAGGACTCGGCCCTTGTCCCGC....................................................2213.003.002.00---------1.00---------------------------------
.........................................................................................................................................................................................................................TGACGAGGATGTGAAGATA..............193.000.00------------3.00-------------------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCCTTAA.....................................................................................2513.001.00-----------2.00---1.00----------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCAT........................................................................................2112.0022.002.00-------------------------------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCCT........................................................................................2212.002.001.00---1.00---------------------------------------
...............................................................................................................TGCAGGAGAAGCAGGTCTGGATAGTAGGGCTGGGACGAGATCATGAGGCCTTCCTGGCCACTGGGAAGGACTCGGCCCTTGTCCCGCAGA.................................................902.000.00-----------------2.00--------------------------
.................................................................................................................................................................................AGGACTCGGCCCTTGTCCCGCAG..................................................2312.002.00----------------1.00-------1.00-------------------
.................................................................................................................................................................................AGGACTCGGCCCTTGTCCCGC....................................................2112.002.001.00--1.00----------------------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTCT.....................................................................................2412.0015.001.00---1.00---------------------------------------
............................................................................................................................................................................TGGGAAGGACTCGGCGC.............................................................1741.500.75-------------0.250.25----0.750.25-----------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCA.........................................................................................2011.0022.00-1.00------------------------------------------
...........................................................................................................................................GCTGGGACGAGATCATGAGGC..........................................................................................2111.001.001.00-------------------------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTAA......................................................................................2311.006.00-----1.00--------------------------------------
..........................................................................................................................................GGCTGGGACGAGATCATGAGGGGT........................................................................................241.000.00---------------1.00----------------------------
.................................................................................................................................................................................AGGACTCGGCCCTTGTCCCGCAGT.................................................2411.002.001.00-------------------------------------------
............................................................................................................................................................................TGGGAAGGACTCGGCG..............................................................1641.000.75--------------0.75---------------------------0.25-
................................................................................................................................................................................AAGGACTCGGCCCTTGTCCCGCAT..................................................241.000.00-1.00------------------------------------------
.................................................................................................................................................................................................................GTCTTTAGTGACGAGGAT.......................1811.001.00----------------------------------1.00---------
........................................................................................................................AGCAGGTCTGGATAGGGC................................................................................................................181.000.00--------------------1.00-----------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCCTTA......................................................................................2411.001.00---------------------------------1.00----------
................................................................................................................................................................................AAGGACTCGGCCCTTGTCCCGCAGT.................................................251.000.001.00-------------------------------------------
...................................................................................................................................................................................GACTCGGCCCTTGTCCCGC....................................................1911.001.00---------1.00----------------------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCCTT.......................................................................................2311.001.00-1.00------------------------------------------
................................................................................................................................................................................AAGGACTCGGCCCTTGTCCCGCT...................................................2311.003.001.00-------------------------------------------
....................................................................................................................................................................................................................................TGAAGCAGATCCTGAAGATGA.2111.001.00-------------------------1.00------------------
................................................................................................................................................................................AAGGACTCGGCCCTTGTCCCGT....................................................221.000.001.00-------------------------------------------
............................................................................................................................................................................................................................CGAGGATGTGAAGCAGGAGC..........201.000.00-----------------------------1.00--------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTAT.....................................................................................2411.009.001.00-------------------------------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCAT........................................................................................221.000.00----------1.00---------------------------------
.........................................................................................................................................................................................................................TGACGAGGATGTGAAT.................161.000.00-------------------1.00------------------------
...................................................................................................................................................................................GACTCGGCCCTTGTCCCGCAGT.................................................2211.003.00--------------------------1.00-----------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTA......................................................................................2311.009.001.00-------------------------------------------
.......................................................................................................................................................................................................................AGTGACGAGGATGTGAAGC................1911.001.001.00-------------------------------------------
...............................................................................................................TGCAGGAGAAGCAGGTCTGGTT.....................................................................................................................221.000.00-------------------------------1.00------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTCA.....................................................................................2411.0015.00----------1.00---------------------------------
............................................................................................................................................CTGGGACGAGATCATGAGGCCTTCATT...................................................................................2711.004.00-1.00------------------------------------------
..........................................................................................................................................................................................................................GACGAGGATGTGAAGATTT.............191.000.00---------------------------1.00----------------
............................................................................................................................................................................................................................CGAGGATGTGAAGCAGGAG...........191.000.00---------------------------------------1.00----
.................................................................................................................................................................................AGGACTCGGCCCTTGTCCCGTT...................................................221.000.001.00-------------------------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTAT......................................................................................2311.006.001.00-------------------------------------------
........................................................................................................................................................................................................................GTGACGAGGATGTGAAGCAGATC...........2311.001.00----------------1.00---------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTTA.....................................................................................2411.009.001.00-------------------------------------------
.............................................................................................................................................TGGGACGAGATCATGAGGCCTTCAT....................................................................................2511.0015.00-----------------------------------------1.00--
............................................................................................................................................CTGGGACGAGATCATGAGGCA.........................................................................................211.000.00---------------------1.00----------------------
...................................................................................................................................................................................GACTCGGCCCTTGTCCCGCAGA.................................................2211.003.001.00-------------------------------------------
............................................................................................................................................................................TGGGAAGGACTCGGC...............................................................1540.750.75-------------0.75------------------------------
............................................................................................................................................................................TGGGAAGGACTCGGCGCTC...........................................................1940.750.75--------------0.50----------------------------0.25
............................................................................................................................................................................TGGGAAGGACTCGGCT..............................................................1640.500.75-------------0.250.25-----------------------------
............................................................................................................................................................................TGGGAAGGACTCGGCGCT............................................................1840.250.75-------------0.25------------------------------
............................................................................................................................................................................TGGGAAGGACTCGGCGCCC...........................................................1940.250.75--------------0.25-----------------------------
............................................................................................................................................................................TGGGAAGGACTCGGCACT............................................................1840.250.75-------------0.25------------------------------
..............................................................................................................................................................................GGAAGGACTCGGCC..............................................................1470.140.14------------------------------------------0.14-

Antisense strand
CTCAAATCCTACTGCACTGAGGGATCTTAAGGAAGGAGGGCAACCAGACAGGAATGGCACTGTGCCCATGGGAGGAGCCATATCAATCACTGCTGGAATGCTCCTGGTGTGTGCAGGAGAAGCAGGTCTGGATAGTAGGGCTGGGACGAGATCATGAGGCCTTCCTGGCCACTGGGAAGGACTCGGCCCTTGTCCCGCAGGTGATGGGTGTCTTTAGTGACGAGGATGTGAAGCAGATCCTGAAGATGAT
...........................................................................................................................................((.((((((((....((((.(((((((((...))))))))).))))...))))))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		mjTestesWT4()
Testes Data. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR206942(GSM723283)
other. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206941(GSM723282)
other. (brain)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
........................................................................................................................................................................................GGCCCTTGTCCCGCAAAC................................................ 181.000.00-------------1.00------------------------------
...........................................................................................................................................................................................................................ACGAGGATGTGAAGCG............... 161.000.00----------------------------1.00---------------