ID: mmu-mir-717
chrX:49775534-49775742 -
Display Libraries
(3)
AGO2.ip 		(10)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(5)
EMBRYO 		(4)
ESC 		(2)
LIVER 		(2)
OTHER 		(1)
TESTES 		(1)
THYMUS
Showing top 51 reads
TTGAAGGCTGAGGCCATTTCTCAGATGTCAGTTTGTCCGAGCTTCTCTCCTTGTCCGCTATCACTGTACCGTCATTTTTCAGTCTCAGACAGAGATACCTTCTCTGAATTCATAGAAGCTGCTCTCCGTTCCGAAGGGATTCAGAAGTGATAAATCCAGCAACTATCTCAGTACCTCATTAGTGTCTGCAGGCCAGCATCGGAAACTGC
...........................................................................((((.((((((.(((.((((((.(((((.((....)).))))).)).)))).))).....)))))).))))...............................................................
...........................................................................76............................................................................154.....................................................
SizePerfect hitTotal NormPerfect NormSRR037936(GSM510474)
293cand1. (cell line)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
..........................................................................................................................................................................................TGCAGGCCAGCATCGtc......17TC7.000.00-5.00---2.00--------------------
..........................................................................................................................................................................................TGCAGGCCAGCATCGtct.....18TCT4.000.00-2.00---1.00---------1.00----------
..........................................................................................................................................................................................TGCAGGCCAGCATCGtctg....19TCTG4.000.00-1.00------2.00----------1.00------
..........................GTCAGTTTGTCCGAGtggt....................................................................................................................................................................19TGGT2.000.00------2.00-------------------
............................................................................................................................TCCGTTCCGAAGGGAcggg..................................................................19CGGG2.001.00------1.00---1.00---------------
.............................................................................................................................................................................CCTCATTAGTGTCTGCAGGCCAGCATCG........2812.002.00---------2.00----------------
.....................................................................................................................................AAGGGATTCAGAAGTtcgt.........................................................19TCGT1.000.00--1.00-----------------------
............................................................................................................................TCCGTTCCGAAGGGA......................................................................1511.001.00-----------1.00--------------
............................................................................................................................................TCAGAAGTGATAAATtga...................................................18TGA1.000.00----------1.00---------------
..........................GTCAGTTTGTCCGAGCgg.....................................................................................................................................................................18GG1.000.00-1.00------------------------
..............................................................................TCAGTCTCAGACAGAGcgaa...............................................................................................................20CGAA1.000.00------------1.00-------------
..........................................................................................................................................................................................TGCAGGCCAGCATCGG.......1611.001.00-------------1.00------------
............................................................................................................................TCCGTTCCGAAGGGAcgg...................................................................18CGG1.001.00-------------------------1.00
....................................................................................TCAGACAGAGATACCTTC...........................................................................................................1811.001.001.00-------------------------
...........................................................................................................................CTCCGTTCCGAAGGGgct....................................................................18GCT1.000.00--------------------1.00-----
...........................................................................................................................CTCCGTTCCGAAGGGATTCAGAAGTGA...........................................................2711.001.001.00-------------------------
............................................................................................................................TCCGTTCCGAAGGGAcg....................................................................17CG1.001.00------------------------1.00-
....................TCAGATGTCAGTTTGTgctt.........................................................................................................................................................................20GCTT1.000.00--------------1.00-----------
................................................................................AGTCTCAGACAGAGATACCTT............................................................................................................2111.001.00----------------1.00---------
.........................................................................ATTTTTCAGTCTCAGACAGAGA..................................................................................................................2211.001.00-------1.00------------------
.......................................................................................................................................................AAATCCAGCAACTATCTCAGT.....................................2111.001.00-------1.00------------------
TTGAAGGCTGAGGCCATTTCTCAGATGTCAGTTTGTCCGAGCTTCTCTCCTTGTCCGCTATCACTGTACCGTCATTTTTCAGTCTCAGACAGAGATACCTTCTCTGAATTCATAGAAGCTGCTCTCCGTTCCGAAGGGATTCAGAAGTGATAAATCCAGCAACTATCTCAGTACCTCATTAGTGTCTGCAGGCCAGCATCGGAAACTGC
...........................................................................((((.((((((.(((.((((((.(((((.((....)).))))).)).)))).))).....)))))).))))...............................................................
...........................................................................76............................................................................154.....................................................
SizePerfect hitTotal NormPerfect NormSRR037936(GSM510474)
293cand1. (cell line)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
.............................................ggTCCTTGTCCGCTATC................................................................................................................................................... 17gg3.001.00---1.00-------1.00------1.00-------
................................................................TGTACCGTCATTTTTCAGTCTCAGACAG..................................................................................................................... 2812.002.002.00-------------------------
..............................................................cggGTACCGTCATTTTTC................................................................................................................................. 18cgg1.000.00--1.00-----------------------
.................................................................................................................tcgAGCTGCTCTCCGTTCCG............................................................................ 20tcg1.000.00---1.00----------------------
.................................................................................................................................................................gtTATCTCAGTACCTCA............................... 17gt1.000.00---1.00----------------------
..............................................................................................................................................................tcgtCTATCTCAGTACCTCA............................... 20tcgt1.000.00--1.00-----------------------
.............................ttTTTGTCCGAGCTTCT................................................................................................................................................................... 17tt1.000.00----------------------1.00---
..............................................gTCCTTGTCCGCTATC................................................................................................................................................... 16g1.001.00----1.00---------------------
............................................................TCACTGTACCGTCATTTTTCAGTCTC........................................................................................................................... 2611.001.001.00-------------------------
..............................................................................................................................................................ttatCTATCTCAGTACCTCA............................... 20ttat1.000.00-----------------1.00--------
..............................................................................aagaTCTCAGACAGAGATACCT............................................................................................................. 22aaga1.000.001.00-------------------------
.....................................................tgaGCTATCACTGTACCGTC........................................................................................................................................ 20tga1.000.00--1.00-----------------------
....................................................GTCCGCTATCACTGTACCGTCATTTTTCAGTCTC........................................................................................................................... 3411.001.001.00-------------------------
.....................................................tcgGCTATCACTGTACCGTC........................................................................................................................................ 20tcg1.000.00--1.00-----------------------
..........................................................TATCACTGTACCGTCATTTTTCAGTCTC........................................................................................................................... 2811.001.001.00-------------------------
.....................................................tcaGCTATCACTGTACCGTCA....................................................................................................................................... 21tca1.000.00---------------------1.00----
..............................................................................................................................................................ccatCTATCTCAGTACCTCA............................... 20ccat1.000.00--1.00-----------------------
..................TCTCAGATGTCAGTTTGTCCGAGCTTCTCTCC............................................................................................................................................................... 3211.001.001.00-------------------------
..........................................................TATCACTGTACCGTCATTTTTCAGTCTCAG......................................................................................................................... 3011.001.001.00-------------------------
......................................................ctatTATCACTGTACCGTCA....................................................................................................................................... 20ctat1.000.00-----------------------1.00--
...........................TCAGTTTGTCCGAGCTTCTCT................................................................................................................................................................. 2111.001.001.00-------------------------
....................................................GTCCGCTATCACTGTACCGTCATTTTTCAGTC............................................................................................................................. 3211.001.001.00-------------------------
............................................................TCACTGTACCGTCATTTTTCAGTCTCAGACAGA.................................................................................................................... 3311.001.001.00-------------------------
...............................................................................................................................................................tgtaTATCTCAGTACCTCA............................... 19tgta1.000.00--1.00-----------------------
........................................................GCTATCACTGTACCGTCATTTTTCAGTCTCAG......................................................................................................................... 3211.001.001.00-------------------------
.....................................................gaaGCTATCACTGTACCGTC........................................................................................................................................ 20gaa1.000.00---1.00----------------------
...........................................................................aaTTCAGTCTCAGACAGAGATACCTTCTCTGAA..................................................................................................... 33aa1.000.001.00-------------------------
.................................................................................................................................................................gaTATCTCAGTACCTCA............................... 17ga1.000.00---1.00----------------------
....................................tgcAGCTTCTCTCCTTGT........................................................................................................................................................... 18tgc1.000.00----1.00---------------------
.....................................................acaaCTATCACTGTACCGTCA....................................................................................................................................... 21acaa1.000.00----1.00---------------------
...............................................TCCTTGTCCGCTATC................................................................................................................................................... 1511.001.00---1.00----------------------