ID: mmu-mir-707
chr7:52105019-52105191 +
Display Libraries
(1)
AGO2.ip
(6)
B-CELL
(2)
BRAIN
(3)
CELL-LINE
(8)
EMBRYO
(7)
ESC
(2)
FIBROBLAST
(2)
LIVER
(1)
LYMPH
(1)
OTHER
(10)
OTHER.mut
(2)
OVARY
(7)
PIWI.ip
(4)
PIWI.mut
(3)
SPLEEN
(40)
TESTES
(1)
THYMUS
Showing top 214 reads
CAGACGTTGAATACGAACGAGGGACGTCATGCCGCTTGCGTGTGAGCATGGGCATGCAGTCATGCCGCTTGCCTACGCTTGTGTGAGCATGGGCATGCGGTCATAGTTGTTGCGGGCAATTCGAAACAGTAGCAAAAGTCTTTTGCCGTATTTTCCATCCGTGGGCACCCTTG
...................................................(((..(((((.((((((.((((....)))).)))))).)))))....((....)).)))........................................................
.........................................................58...............................................................123................................................
SizePerfect hitTotal NormPerfect NormSRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR037937(GSM510475)
293cand2. (cell line)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR073954(GSM629280)
total RNA. (blood)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM475281(GSM475281)
total RNA. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (testes)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR037899(GSM510435)
ovary_rep4. (ovary)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
...........TACGAACGAGGGACGTCATGCCGCTT........................................................................................................................................261121.00121.001.0039.0032.001.00-14.0015.00-1.00-6.002.00--1.001.003.001.001.00------------1.00-------------------1.00----------------------1.00---
.......TGAATACGAACGAGGGACGTCATGCC............................................................................................................................................26162.0062.0030.003.004.0011.00-2.002.00--1.00-1.006.00--1.00-----1.00--------------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGCCGC..........................................................................................................................................28132.0032.004.006.004.006.00-4.001.00--2.00--4.00-----------1.00-----------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGC.............................................................................................................................................25118.0018.0010.00--4.00--1.00-1.002.00--------------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGCT.........................................................................................................................................25118.0018.001.00----1.001.005.00---7.00-------------------1.00----------------1.00-1.00---------------------------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAAACA.............................................25115.0015.002.00--1.00----1.00--4.00-----------2.00-3.00-----------1.001.00---------------------------------------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAAAC..............................................24113.0013.005.00--3.00-------2.00---1.00-----1.00---1.00----------------------------------------------------
.AGACGTTGAATACGAACGAGGGACGTC.................................................................................................................................................27113.0013.002.003.002.001.00-2.003.00-----------------------------------------------------------------------
..................................................................................................................................AGCAAAAGTCTTTTGCCGT........................19110.0010.00--------------------4.00-------------2.00-2.00---2.00-------------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGGGC........................................................22110.0010.00-------10.00----------------------------------------------------------------------
....................................................................................................................CAATTCGAAACAGTAGCAAAAGTCTT...............................2619.009.00----9.00-------------------------------------------------------------------------
............................................................................................................................................TTTTGCCGTATTTTCCATCCGTGGGC.......2619.009.00-----------------3.006.00-----------------------------------------------------------
.........................................................................................TGGGCATGCGGTCATAGTTGTTGCGG..........................................................2617.007.003.002.001.00-------------1.00-------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGCCGCT.........................................................................................................................................2917.007.00-1.001.001.00------1.00-------------1.00---2.00-------------------------------------------------
.....GTTGAATACGAACGAGGGACGTCATG..............................................................................................................................................2616.006.001.001.001.00-----------1.00------1.00----------------------------------------1.00---------------
.......TGAATACGAACGAGGGACGTCATG..............................................................................................................................................2415.005.00---3.00---------------------------1.00-------1.00--------------------------------------
.....GTTGAATACGAACGAGGGACGTCATGCCGCT.........................................................................................................................................3115.005.00-------5.00----------------------------------------------------------------------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAAACAGT...........................................2715.005.001.002.00-1.00--------------------------------------------1.00-----------------------------
.....GTTGAATACGAACGAGGGACGTCATGCC............................................................................................................................................2815.005.001.00-----------2.00-1.00---------1.00-----------------------------------------------------
............ACGAACGAGGGACGTCATG..............................................................................................................................................1915.005.00-----------------------------------2.00---------2.00--------------1.00-----------------
..........................................TGAGCATGGGCATGCAGTCATGCCGCT........................................................................................................2715.005.00--------2.00------3.00--------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGC..........................................................................................................................................2415.005.004.00--1.00--------------------------------------------------------------------------
...ACGTTGAATACGAACGAGGGACGTCATG..............................................................................................................................................2815.005.00-----1.00--------4.00---------------------------------------------------------------
......TTGAATACGAACGAGGGACGTCATGCC............................................................................................................................................2715.005.004.00-------1.00---------------------------------------------------------------------
..........................................................................................................TTGTTGCGGGCAATTCGAAACAGTAG.........................................2614.004.00-------------4.00----------------------------------------------------------------
.........................................................................................TGGGCATGCGGTCATAGTTGTTGCG...........................................................2514.004.00-1.00------2.00--1.00------------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGCCG...........................................................................................................................................2714.004.001.00--1.00-1.001.00-----------------------------------------------------------------------
................................................................................................................CGGGCAATTCGAAACAGTAGCAAAAG...................................2613.003.00----3.00-------------------------------------------------------------------------
.....GTTGAATACGAACGAGGGACGTCATGC.............................................................................................................................................2713.003.00---1.00-----------------2.00--------------------------------------------------------
...............................................................................................................GCGGGCAATTCGAAACAGTAGCAAAAG...................................2713.003.00----3.00-------------------------------------------------------------------------
....CGTTGAATACGAACGAGGGACGTCAT...............................................................................................................................................2613.003.00-1.002.00---------------------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGCTTGCGT....................................................................................................................................3013.003.00-----------------------------3.00------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGCTTG.......................................................................................................................................2713.003.002.00---------------1.00-------------------------------------------------------------
...ACGTTGAATACGAACGAGGGACGTCAT...............................................................................................................................................2713.003.00--2.00-------1.00-------------------------------------------------------------------
............................................................................................................................AACAGTAGCAAAAGTCTTTT.............................2013.003.00----3.00-------------------------------------------------------------------------
......TTGAATACGAACGAGGGACGTCATGCCGC..........................................................................................................................................2913.003.001.00--2.00--------------------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCAT...............................................................................................................................................2313.003.002.00-------------------------1.00---------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGa..........................................................................................................................................24A3.001.00-1.00------------------------2.00---------------------------------------------------
........................................................................................ATGGGCATGCGGTCATAGTTGTTGCGGGC........................................................2913.003.00---------3.00--------------------------------------------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGGGCAATT....................................................2613.003.00---1.00----2.00---------------------------------------------------------------------
.........................................................................................TGGGCATGCGGTCATAGTTGTTGCGGGC........................................................2813.003.001.00--1.00-----1.00--------------------------------------------------------------------
.....GTTGAATACGAACGAGGGACGTCAT...............................................................................................................................................2513.003.001.00-----------1.00--------------------1.00--------------------------------------------
............................................................................................................GTTGCGGGCAATTCGAAACAGT...........................................2212.002.00--------------------1.00-------------------1.00-------------------------------------
.......TGAATACGAACGAGGGACGTCATGCCGCTT........................................................................................................................................3012.002.001.00--1.00--------------------------------------------------------------------------
..........ATACGAACGAGGGACGTCATGCCGCT.........................................................................................................................................2612.002.001.00------------------------------------------------------------------1.00----------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAAACAGTAGC........................................3012.002.00-----------------------1.001.00-----------------------------------------------------
..............................................................................TTGTGTGAGCATGGGCATGC...........................................................................2012.002.00---------2.00--------------------------------------------------------------------
................................................................................GTGTGAGCATGGGCATGCGGTCAT.....................................................................2412.002.00--------------------------------2.00---------------------------------------------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAA................................................2212.002.00-------------------------------------1.00----------------------------1.00-----------
.............................................................................................................TTGCGGGCAATTCGAAACAGTAGCAAAAG...................................2912.002.00-1.00---------------------------------------------------1.00------------------------
............ACGAACGAGGGACGTCATGCCGCTT........................................................................................................................................2512.002.00---1.00----------------1.00---------------------------------------------------------
.AGACGTTGAATACGAACGAGGGACGT..................................................................................................................................................2612.002.00-2.00----------------------------------------------------------------------------
............................................................................................................................................TTTTGCCGTATTTTCCATCCGTGGG........2512.002.00-----------------2.00------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGCTTGCGTG...................................................................................................................................3112.002.00--------1.00-------------------------------------------------------------------1.00-
......TTGAATACGAACGAGGGACGTCATG..............................................................................................................................................2512.002.00--1.00-------------------------------------------------------1.00-------------------
....CGTTGAATACGAACGAGGGACGTCATG..............................................................................................................................................2712.002.00-1.00---------------------------------------1.00------------------------------------
.................................................................................TGTGAGCATGGGCATGCGGTCATAGT..................................................................2612.002.00-1.00------1.00---------------------------------------------------------------------
..........................................TGAGCATGGGCATGCAGTCATGCCGCTTG......................................................................................................2912.002.00--------1.00--------------------1.00------------------------------------------------
..GACGTTGAATACGAACGAGGGACGT..................................................................................................................................................2512.002.001.00-------------------------------------------------------1.00---------------------
.......TGAATACGAACGAGGGACGTCATGCCGCTTG.......................................................................................................................................3112.002.00---------2.00--------------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGCTTGC......................................................................................................................................2812.002.00---2.00--------------------------------------------------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGG..........................................................2011.001.00---------------------------------------1.00--------------------------------------
..........................................................................................................TTGTTGCGGGCAATTCGAAACAGTAGCAA......................................2911.001.00-----------------------1.00------------------------------------------------------
........................................................................................................AGTTGTTGCGGGCAATTCGAAACAGT...........................................2611.001.00-1.00----------------------------------------------------------------------------
......TTGAATACGAACGAGGGACGTCAT...............................................................................................................................................2411.001.00---------------------------1.00--------------------------------------------------
......................................................................................................................ATTCGAAACAGTAGCAAAAG...................................2011.001.00---------------------------------------------------------------1.00--------------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAAACcc............................................26CC1.0013.00-------------------------1.00----------------------------------------------------
.......TGAATACGAACGAGGGACG...................................................................................................................................................1911.001.00--------------------------------------------1.00---------------------------------
.....................................................................................................CATAGTTGTTGCGGGCAATTCGAAAC..............................................2611.001.00-1.00----------------------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGCCcc..........................................................................................................................................28CC1.0062.00---1.00--------------------------------------------------------------------------
.....GTTGAATACGAACGAGGGACGTC.................................................................................................................................................2311.001.00----------------------------------1.00-------------------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGGG.........................................................2111.001.00---1.00--------------------------------------------------------------------------
......TTGAATACGAACGAGGGACGTCATGCCG...........................................................................................................................................2811.001.00---1.00--------------------------------------------------------------------------
.....GTTGAATACGAACGAGGGACGT..................................................................................................................................................2211.001.00----------------------------------------------1.00-------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGGGCAATTCG..................................................2811.001.00-1.00----------------------------------------------------------------------------
......TTGAATACGAACGAGGGACGT..................................................................................................................................................2111.001.00-------------------------------------------1.00----------------------------------
..GACGTTGAATACGAACGAGGGACGTt.................................................................................................................................................26T1.002.00--1.00---------------------------------------------------------------------------
.....GTTGAATACGAACGAGGGACGTCA................................................................................................................................................2411.001.00--------------------1.00---------------------------------------------------------
....CGTTGAATACGAACGAGGGACG...................................................................................................................................................2211.001.00-------------------1.00----------------------------------------------------------
..............GAACGAGGGACGTCATG..............................................................................................................................................1711.001.00-----------------------------------1.00------------------------------------------
...............................................................................TGTGTGAGCATGGGCATGCGGTCAT.....................................................................2511.001.00--------------------------------------1.00---------------------------------------
..........................................................................................GGGCATGCGGTCATAGTTGTTGCGG..........................................................2511.001.00----------1.00-------------------------------------------------------------------
..................................................................................GTGAGCATGGGCATGCGGTCAT.....................................................................2211.001.00--------------------------------1.00---------------------------------------------
................................................................................................................................................GCCGTATTTTCCATCCGTGGGCA......2311.001.00------------------------------------------------------1.00-----------------------
............................................................................................................................................TTTTGCCGTATTTTCCATCCGTcggc.......26CGGC1.000.00------------------1.00-----------------------------------------------------------
...................AGGGACGTCATGCCGCTTGCGT....................................................................................................................................2211.001.00----------------1.00-------------------------------------------------------------
..GACGTTGAATACGAACGAGGGACGTC.................................................................................................................................................2611.001.00-----1.00------------------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGCCa...........................................................................................................................................27A1.0062.001.00-----------------------------------------------------------------------------
....................................................................................................TCATAGTTGTTGCGGGCAATTCGAAACA.............................................2811.001.00----------------------------------------------------------------------1.00-------
............................................................................................................................................TTTTGCCGTATTTTCCATCCGTGGGt.......26T1.002.00-----------------1.00------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCA................................................................................................................................................2211.001.001.00-----------------------------------------------------------------------------
........GAATACGAACGAGGGACGT..................................................................................................................................................1911.001.00--------------------------------------------1.00---------------------------------
...........TACGAACGAGGGACGTCATGCCG...........................................................................................................................................2311.001.00------------------------------------------1.00-----------------------------------
.........................................................................................................................CGAAACAGTAGCAAAAGTC.................................1911.001.00---1.00--------------------------------------------------------------------------
....................................................................................................................CAATTCGAAACAGTAGCAAAAGc..................................23C1.000.00----1.00-------------------------------------------------------------------------
......TTGAATACGAACGAGGGACG...................................................................................................................................................2011.001.00---------------------------1.00--------------------------------------------------
.........AATACGAACGAGGGACGTCATGCCGC..........................................................................................................................................2611.001.00----------1.00-------------------------------------------------------------------
.......................................................................................................TAGTTGTTGCGGGCAATTCaaac...............................................23AAAC1.000.00--------1.00---------------------------------------------------------------------
............................................................................................................GTTGCGGGCAATTCGA.................................................1611.001.001.00-----------------------------------------------------------------------------
..........................................TGAGCATGGGCATGCAGTCATGCCGC.........................................................................................................2611.001.00---1.00--------------------------------------------------------------------------
.........................................................................TACGCTTGTGTGAGCATGGGCATGCGG.........................................................................2711.001.00----------------------------1.00-------------------------------------------------
.............................................................................................................................ACAGTAGCAAAAGTCTTT..............................1821.001.00----1.00-------------------------------------------------------------------------
............................................................................................................................................TTTTGCCGTATTTTCCATCCGTtggc.......26TGGC1.000.00---------------1.00--------------------------------------------------------------
......TTGAATACGAACGAGGGA.....................................................................................................................................................1811.001.00-----------------------------------------------1.00------------------------------
...........TACGAACGAGGGACGTCATGCCGCcc........................................................................................................................................26CC1.005.00-------------------------1.00----------------------------------------------------
............................................................................................................................................................ATCCGTGGGCACCCT..1511.001.00---1.00--------------------------------------------------------------------------
............ACGAACGAGGGACGTCATGCCGCTTG.......................................................................................................................................2611.001.00-----1.00------------------------------------------------------------------------
......TTGAATACGAACGAGGGACGTCATGC.............................................................................................................................................2611.001.00---------1.00--------------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGttt........................................................................................................................................26TTT1.001.00--1.00---------------------------------------------------------------------------
.......TGAATACGAACGAGGGACGTCATGCa............................................................................................................................................26A1.0018.001.00-----------------------------------------------------------------------------
.......TGAATACGAACGAGGGACGTC.................................................................................................................................................2111.001.001.00-----------------------------------------------------------------------------
........GAATACGAACGAGGGccg...................................................................................................................................................18CCG1.000.00----------------------------------------------1.00-------------------------------
......TTGAATACGAACGAGGGACGTCA................................................................................................................................................2311.001.00------------------------------------1.00-----------------------------------------
..........ATACGAACGAGGGACGTC.................................................................................................................................................1811.001.00-----------------------------------------------------------------1.00------------
....CGTTGAATACGAACGAGGGACGTC.................................................................................................................................................2411.001.001.00-----------------------------------------------------------------------------
........GAATACGAACGAGGGACGTCATGCC............................................................................................................................................2511.001.00-----------------------1.00------------------------------------------------------
..............................................................TGCCGCTTGCCTACGCTTGTGTGAGCAT...................................................................................2811.001.00--------1.00---------------------------------------------------------------------
................................................................................................................CGGGCAATTCGAAACAGTAGCAAAAGTC.................................2811.001.00-----1.00------------------------------------------------------------------------
................................CGCTTGCGTGTGAGCATGGGCATGgag..................................................................................................................27GAG1.000.00-----------------------1.00------------------------------------------------------
.........................................................................................................GTTGTTGCGGGCAATTCGA.................................................1911.001.00---------------------------------------1.00--------------------------------------
............................................................................................................................................TTTTGCCGTATTTTCCATCCGa...........22A1.000.00-----------------------------------------------1.00------------------------------
....................................................................................................................CAATTCGAAACAGTAGCAAAAGT..................................2311.001.00----1.00-------------------------------------------------------------------------
.........AATACGAACGAGGGACGTCAT...............................................................................................................................................2111.001.00-------------------------------------------------1.00----------------------------
........................................................................................ATGGGCATGCGGTCATAGTT.................................................................2011.001.00---------------------------------------------------------------------------1.00--
............................................................................................................................................TTTTGCCGTATTTTCCAT...............1811.001.00-----------------1.00------------------------------------------------------------
........................................................................................................AGTTGTTGCGGGCAATTCGAAACAG............................................2511.001.00----------1.00-------------------------------------------------------------------
.........................................................................TACGCTTGTGTGAGCATGGGCATGCGGTC.......................................................................2911.001.00--------------------------------------------------1.00---------------------------
...ACGTTGAATACGAACGAGGGACGTCATGCC............................................................................................................................................3011.001.00--------------1.00---------------------------------------------------------------
...ACGTTGAATACGAACGAGGGACGT..................................................................................................................................................2411.001.00----------------------------------------------------------------1.00-------------
.......................................................................................................TAGTTGTTGCGGGCAATTCGAAA...............................................2311.001.00------------------------------------------1.00-----------------------------------
.........................................................................................TGGGCATGCGGTCATAGTTGTTGCGGG.........................................................2711.001.00------------------------1.00-----------------------------------------------------
............................................................................GCTTGTGTGAGCATGGGCATGCGGT........................................................................2511.001.00--------------1.00---------------------------------------------------------------
..............................................................................................................TGCGGGCAATTCGAAACAGTAGCAAAAGT..................................2911.001.00----------1.00-------------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCgct..........................................................................................................................................24GCT1.000.00---------------1.00--------------------------------------------------------------
..........................................TGAGCATGGGCATGCAGTCATGCCG..........................................................................................................2511.001.001.00-----------------------------------------------------------------------------
.............CGAACGAGGGACGTCATGCCGCTTG.......................................................................................................................................2511.001.00-------------------------------------1.00----------------------------------------
......................................................TGCAGTCATGCCGCTTGCCTACGCTT.............................................................................................2611.001.00-----------------1.00------------------------------------------------------------
...........TACGAACGAGGGACGTCATGCCGtttg.......................................................................................................................................27TTTG1.001.00----------1.00-------------------------------------------------------------------
.....................................................................................................CATAGTTGTTGCGGGCAATTt...................................................21T1.000.00-------------------------------------------------------------1.00----------------
....................................................................................................TCATAGTTGTTGCGGGCAATTCGAAA...............................................2611.001.00--------1.00---------------------------------------------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGGGCAAT.....................................................2511.001.00-----------1.00------------------------------------------------------------------
..............................................................................................................TGCGGGCAATTCGAAACAGTAGCAAAAG...................................2811.001.00-1.00----------------------------------------------------------------------------
........................................................................................................................TCGAAACAGTAGCAAAAGTCTTTT.............................2411.001.00------------------------------------------------------------------------1.00-----
...............................................................................TGTGTGAGCATGGGCATGCGGTCATA....................................................................2611.001.00--------1.00---------------------------------------------------------------------
..........................TCATGCCGCTTGCGTGTGAGCATGGGC........................................................................................................................2711.001.00---------------1.00--------------------------------------------------------------
.....GTTGAATACGAACGAGGGACGTCATccc............................................................................................................................................28CCC1.003.00------------1.00-----------------------------------------------------------------
.....................................................ATGCAGTCATGCCGCgtgt.....................................................................................................19GTGT1.000.00----------------------------------------------------1.00-------------------------
..............................................................................TTGTGTGAGCATGGGCATGCGGTCA......................................................................2511.001.00-----------1.00------------------------------------------------------------------
.............................................................................................CATGCGGTCATAGTTGTTGCGG..........................................................2211.001.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................CATCCGTGGGCACCCTaca19ACA1.000.00------------------------------1.00-----------------------------------------------
CAGACGTTGAATACGAACGAGGGACGTCATGCCGCTTGCGTGTGAGCATGGGCATGCAGTCATGCCGCTTGCCTACGCTTGTGTGAGCATGGGCATGCGGTCATAGTTGTTGCGGGCAATTCGAAACAGTAGCAAAAGTCTTTTGCCGTATTTTCCATCCGTGGGCACCCTTG
...................................................(((..(((((.((((((.((((....)))).)))))).)))))....((....)).)))........................................................
.........................................................58...............................................................123................................................
SizePerfect hitTotal NormPerfect NormSRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR037937(GSM510475)
293cand2. (cell line)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR073954(GSM629280)
total RNA. (blood)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM475281(GSM475281)
total RNA. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (testes)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR037899(GSM510435)
ovary_rep4. (ovary)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
..................GAGGGACGTCATGCCGCTTGCGTGTGA................................................................................................................................ 27110.0010.00-------------10.00----------------------------------------------------------------
........................................................................................................................................AGTCTTTTGCCGTATTTTCCATCCGT........... 2617.007.00----7.00-------------------------------------------------------------------------
.................................................................................................................................................CCGTATTTTCCATCCGT........... 1716.006.00----------------------6.00-------------------------------------------------------
................................................................................................GCGGTCATAGTTGTTGCGGGCAATTCGAA................................................ 2915.005.001.001.002.00----------------------------1.00----------------------------------------------
................ACGAGGGACGTCATGCCGCTTGCGTG................................................................................................................................... 2615.005.00----5.00-------------------------------------------------------------------------
..............................................................TGCCGCTTGCCTACGCTTGTGTGAGCA.................................................................................... 2715.005.00-----1.001.00--2.00-----1.00--------------------------------------------------------------
............................................................................................................GTTGCGGGCAATTCGAAACAGTAGCA....................................... 2614.004.00---------2.00-----1.00------------1.00-------------------------------------------------
..................................................................................................................................AGCAAAAGTCTTTTGCCGTATTTTCCA................ 2713.003.002.00----1.00------------------------------------------------------------------------
........................................................CAGTCATGCCGCTTGCCT................................................................................................... 1813.003.00----------------3.00-------------------------------------------------------------
........................................................................................................................................AGTCTTTTGCCGTATTTTCCATCCGTGGG........ 2913.003.00----1.00---------------------2.00---------------------------------------------------
.................................................................................................CGGTCATAGTTGTTGCGGGCAATTCGAA................................................ 2812.002.00-1.00---------------1.00------------------------------------------------------------
...........................................................................................................TGTTGCGGGCAATTCGAAACAGTAGCA....................................... 2712.002.00--------------2.00---------------------------------------------------------------
.....................................................................................................................................AAAAGTCTTTTGCCGTAT...................... 1812.002.00-------------------2.00----------------------------------------------------------
.........................................GTGAGCATGGGCATGCAGTCATGCCGCTTG...................................................................................................... 3012.002.00----2.00-------------------------------------------------------------------------
.............CGAACGAGGGACGTCATGCCGCTTG....................................................................................................................................... 2512.002.00----2.00-------------------------------------------------------------------------
.........................................................AGTCATGCCGCTTGCCTACGCTTGTG.......................................................................................... 2612.002.00----2.00-------------------------------------------------------------------------
..........................................................................................................................................TCTTTTGCCGTATTTTCCATCCG............ 2312.002.00-------2.00----------------------------------------------------------------------
.......................................................GCAGTCATGCCGCTTGCCTACGCTTGTG.......................................................................................... 2812.002.00----2.00-------------------------------------------------------------------------
..............................................................TGCCGCTTGCCTACGCTTGTGTG........................................................................................ 2312.002.00-------------------2.00----------------------------------------------------------
...............................................................................................TGCGGTCATAGTTGTTGCGGGCAATTCGAA................................................ 3011.001.00----------1.00-------------------------------------------------------------------
..................................................................................................................GGCAATTCGAAACAGTAGCAAAAG................................... 2411.001.00------------------------------1.00-----------------------------------------------
.........................................................................................................................................GTCTTTTGCCGTATTTTCCATCCGTG.......... 2611.001.00-------------------------------------------1.00----------------------------------
..............................................................gGCCGCTTGCCTACGCTTGTGTGAG...................................................................................... 25g1.000.00-------------------1.00----------------------------------------------------------
..........................................................GTCATGCCGCTTGCCTACGCTTGTGTGA....................................................................................... 2811.001.00--------1.00---------------------------------------------------------------------
..........................................................................................................................................................CCATCCGTGGGCACCCT.. 1711.001.00----------------1.00-------------------------------------------------------------
....................................................CATGCAGTCATGCCGCTTGCCTACG................................................................................................ 2511.001.00---------------------------------1.00--------------------------------------------
......................GACGTCATGCCGCTTGCGTGTGAGC.............................................................................................................................. 2511.001.00-----------------------------------------------------------1.00------------------
............................cTGCCGCTTGCGTGTGA................................................................................................................................ 17c1.000.00-------------------------------------------------------1.00----------------------
................................................................................................................................................GCCGTATTTTCCATCCGT........... 1811.001.00------------------------1.00-----------------------------------------------------
..........................TCATGCCGCTTGCGTGTGAGC.............................................................................................................................. 2111.001.00---------------------1.00--------------------------------------------------------
..................................................................................................................GGCAATTCGAAACAGTAGCAAAAGTCTTTT............................. 3011.001.00--------------------------------------------------------------------1.00---------
.........................................................................................................GTTGTTGCGGGCAATTCGAAACAGTA.......................................... 2611.001.00-----1.00------------------------------------------------------------------------
...............................................................................................................GCGGGCAATTCGAAACAGTAGCA....................................... 2311.001.00--------------1.00---------------------------------------------------------------
..........................................................................................................................................TCTTTTGCCGTATTTTCCATCCGTGG......... 2611.001.00---------------------------------------------------------1.00--------------------
..................................................................................GTGAGCATGGGCATGCGGTCATAGTTGT............................................................... 2811.001.00---------------------------------------------------------------------1.00--------
......................GACGTCATGCCGCTTGCGTGTGAGCA............................................................................................................................. 2611.001.001.00-----------------------------------------------------------------------------
........................................................................................................AGTTGTTGCGGGCAATTCGAAACAGTAGCA....................................... 3011.001.00-1.00----------------------------------------------------------------------------
....................................................................................................................................CAAAAGTCTTTTGCCGTATTTTCC................. 2411.001.00-----------------------------------------------------------------------1.00------
.........................................................................................................................................GTCTTTTGCCGTATTTTCCATCCG............ 2411.001.00-------------------------------------------------1.00----------------------------
..............................................CATGGGCATGCAGTCATG............................................................................................................. 1811.001.00-----------------------------------------1.00------------------------------------
..........................................................................................................................GAAACAGTAGCAAAAGTCTTTTGCCGTA....................... 2811.001.00----------1.00-------------------------------------------------------------------
..............................................................TGCCGCTTGCCTACGCTTGTGTGAG...................................................................................... 2511.001.00-------------------1.00----------------------------------------------------------
.......................................................................................................................TTCGAAACAGTAGCAAAAG................................... 1911.001.00------------------------------1.00-----------------------------------------------
............................................................................GCTTGTGTGAGCATGGGCATGCGGTCATA.................................................................... 2911.001.00------------1.00-----------------------------------------------------------------
.....................................................ATGCAGTCATGCCGCTTGCCTACGCT.............................................................................................. 2611.001.00-------1.00----------------------------------------------------------------------
....................................................................................................................................CAAAAGTCTTTTGCCGTATTT.................... 2111.001.00---------------------------1.00--------------------------------------------------
.....................................................................................................................................AAAAGTCTTTTGCCGTATTTTCCATCC............. 2711.001.001.00-----------------------------------------------------------------------------
....................GGGACGTCATGCCGCTTGCGTGTGA................................................................................................................................ 2511.001.00--------1.00---------------------------------------------------------------------
..............................................................TGCCGCTTGCCTACGCTTGTG.......................................................................................... 2111.001.00---------1.00--------------------------------------------------------------------
.....................GGACGTCATGCCGCTTGCGTGTGAGCA............................................................................................................................. 2711.001.00--------------------------------------1.00---------------------------------------
............................................................aATGCCGCTTGCCTACGCTTGTGTGAGCA.................................................................................... 29a1.000.00--------1.00---------------------------------------------------------------------
.......................................................................................................................................AAGTCTTTTGCCGTATTTTCCATCCGT........... 2711.001.00--------------1.00---------------------------------------------------------------
.........................................................................................TGGGCATGCGGTCATAGTTGTTGC............................................................ 2411.001.00---------------------------------1.00--------------------------------------------
............................................................................................................................AACAGTAGCAAAAGTCTTTTGCCGTA....................... 2611.001.00------1.00-----------------------------------------------------------------------
...............................................................................................................GCGGGCAATTCGAAACAGTAGCAA...................................... 2411.001.00-------------------------------------------------------------------------1.00----
......................................................................................................................................tAAGTCTTTTGCCGTATT..................... 18t1.000.00---------------------------1.00--------------------------------------------------
.....................................................................................................................................................ATTTTCCATCCGTGGGCA...... 1811.001.00------------------------------1.00-----------------------------------------------
...............................................................GCCGCTTGCCTACGCTTGTGTGAGCA.................................................................................... 2611.001.00--------1.00---------------------------------------------------------------------
................................................................CCGCTTGCCTACGCTTGTGTGAGCAT................................................................................... 2611.001.00-----------------------------------------------------------------------------1.00
............................................................................................................GTTGCGGGCAATTCGAAACAGTAGCAA...................................... 2711.001.00---------1.00--------------------------------------------------------------------
............................................................CATGCCGCTTGCCTACGCTTGTGTGAGCA.................................................................................... 2911.001.00-1.00----------------------------------------------------------------------------
...............................................................................................................................AGTAGCAAAAGTCTTTTG............................ 1820.500.50-----------------------------------------0.50------------------------------------