ID: mmu-mir-678
chr10:75670021-75670204 -
Display Libraries
(1)
AGO2.ip 		(1)
B-CELL 		(6)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(2)
ESC 		(2)
OTHER 		(4)
OTHER.mut 		(5)
PIWI.ip 		(3)
PIWI.mut 		(2)
SPLEEN 		(19)
TESTES 		(1)
THYMUS
Showing top 66 reads
ATCTTGTGTCAGTGGTGTCCTTGATGCCCTTGGCTAGCTGCTGTATACCTGTGGACTGTGACTTGCAGAGCTGTGCTCCAATATGAGAGATGGCCATGCACCCGTGTCTCGGTGCAAGGACTGGAGGTGGCAGTGTGCCCAGTGGACTCTGCATGGGTAGCCGCGTGTAATGTCTATGGGTAAA
.....................................................................(((((.(((((.(((.....))).((.((((((........)))))).))..)))))...)))))..................................................
....................................................................69...............................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR037936(GSM510474)
293cand1. (cell line)		mjTestesWT1()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT2()
Testes Data. (testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
..........................................................................................................TCTCGGTGCAAGGACTGGAGGTGGC.....................................................2517.007.00-7.00----------------------------------------
...........................................................GACTTGCAGAGCTGTGCTCCAAT......................................................................................................2316.006.00---1.00--2.00-----------2.00---1.00-------------------
.........................................................................................................................................CCCAGTGGACTCTGCATGGGTAGCCGC....................2715.005.00--5.00---------------------------------------
..............................................ACCTGTGGACTGTGACTT........................................................................................................................1815.005.00----------3.001.00----1.00-------------------------
......................................................................................................................................GTGCCCAGTGGACTCTGCATGGGT..........................2413.003.00---1.00-2.00------------------------------------
.........................................................................TGCTCCAATATGAGAGATGG...........................................................................................2013.003.00-------------3.00----------------------------
........................................................................................................TGTCTCGGTGCAAGGACTGGAGGTGG......................................................2613.003.00-------1.001.00--------1.00------------------------
................................................................................................................TGCAAGGACTGGAGGTGGCAGTGTGCC.............................................2713.003.00-------1.00-2.00--------------------------------
.............................................................................................................CGGTGCAAGGACTGGA...........................................................1613.003.00---------------3.00--------------------------
.........................................TGTATACCTGTGGACTGTGACTTGC......................................................................................................................2512.002.00----2.00-------------------------------------
..........................................GTATACCTGTGGACTGTGACTTGCAGA...................................................................................................................2712.002.00--------------1.00-----------------1.00---------
......................................................................................GAGATGGCCATGCACCCGT...............................................................................1912.002.00-----------------------1.00------------1.00-----
.........................................................................................................GTCTCGGTGCAAGGACTGGAGGTGGC.....................................................2612.002.00--1.00-----------1.00---------------------------
.............................................TACCTGTGGACTGTGACTTGCAGAGCTG...............................................................................................................2812.002.00------------1.00-------1.00---------------------
..........................................GTATACCTGTGGACTGTGACTT........................................................................................................................2212.002.00----------------1.00------------------1.00------
.............................................TACCTGTGGACTGTGACTTGCAGAGC.................................................................................................................2612.002.00------------1.00------------------------1.00----
...................................AGCTGCTGTATACCTGTGGACT...............................................................................................................................2212.002.00---1.00-------1.00------------------------------
..................................................................................................................CAAGGACTGGAGGTGGCAGTGTGCCC............................................2612.002.002.00-----------------------------------------
.............................................TACCTGTGGACTGTGACTTGCAGAG..................................................................................................................2512.002.00------------1.00------1.00----------------------
..................................................................................ATGAGAGATGGCCATGCACCCGT...............................................................................2312.002.00----------1.001.00------------------------------
.....................................................................................................................GGACTGGAGGTGGCAacg.................................................18ACG2.000.00-------------------------1.00--1.00-------------
..............................................ACCTGTGGACTGTGACTTGCAGA...................................................................................................................2312.002.00--------2.00---------------------------------
...................................AGCTGCTGTATACCTGTGGACTGT.............................................................................................................................2412.002.00-----2.00------------------------------------
...................................................................................................................AAGGACTGGAGGTGGCAGT..................................................1911.001.00-----1.00------------------------------------
......................................................ACTGTGACTTGCAGAGCTGTG.............................................................................................................2111.001.00----1.00-------------------------------------
..........................................................................................................................GGAGGTGGCAGTGTGgca............................................18GCA1.000.00----------------------------------------1.00-
.................................................................................................................GCAAGGACTGGAGGTGGCAGTGTGa..............................................25A1.000.00---------------------------------1.00--------
..................................TAGCTGCTGTATACCTGTGGACTGTG............................................................................................................................2611.001.00----------------------------------1.00-------
.........................................................................................................GTCTCGGTGCAAGGACTGGAGG.........................................................2211.001.00---------------------1.00--------------------
................................................CTGTGGACTGTGACTTGCAGAGCTGTGC............................................................................................................2811.001.00--------------1.00---------------------------
.............................................................................................................CGGTGCAAGGACTGGAGGTGGCAGTGTG...............................................2811.001.001.00-----------------------------------------
............................................ATACCTGTGGACTGTGACTTGC......................................................................................................................2211.001.00------1.00-----------------------------------
................................................................................................................TGCAAGGACTGGAGGTGGCAGTGTGCCCAG..........................................3011.001.00-------1.00----------------------------------
.................................................TGTGGACTGTGACTTGCAGAGCTGTGC............................................................................................................2711.001.00---------1.00--------------------------------
........................................................TGTGACTTGCAGAGCTGTGCTCCAATA.....................................................................................................2711.001.00------------1.00-----------------------------
...TTGTGTCAGTGGTGTCCTTGATGCCC...........................................................................................................................................................2611.001.00---------------------------------------1.00--
.............................................................................................................CGGTGCAAGGACTGGAGGT........................................................1911.001.00----------------1.00-------------------------
...................................................................................TGAGAGATGGCCATGCAa...................................................................................18A1.000.00----1.00-------------------------------------
.................................................TGTGGACTGTGACTTGCAGAGCTGTG.............................................................................................................2611.001.00---------1.00--------------------------------
............................................................................TCCAATATGAGAGATGGCCATGCACacgg...............................................................................29ACGG1.000.00--------------------1.00---------------------
........................................................TGTGACTTGCAGAGCTGTGCTCCAA.......................................................................................................2511.001.00-------------------------------1.00----------
..........................................................TGACTTGCAGAGCTGTGCTCCAATA.....................................................................................................2511.001.00---1.00--------------------------------------
.....................................................................................................................................................TGCATGGGTAGCCGCGTGTAATGTCTA........2711.001.00-------1.00----------------------------------
..............................................ACCTGTGGACTGTGACTTGCA.....................................................................................................................2111.001.00------1.00-----------------------------------
....................................................................................................................AGGACTGGAGGTGGCAGTGTGCCCAGT.........................................2711.001.00--------------------------------------1.00---
............................................ATACCTGTGGACTGTGACTT........................................................................................................................2011.001.00---1.00--------------------------------------
.........................................................GTGACTTGCAGAGCTGTGCTCCAAT......................................................................................................2511.001.00-----1.00------------------------------------
.................................................TGTGGACTGTGACTTGCAGAGCTGTGCTCC.........................................................................................................3011.001.00-------1.00----------------------------------
.........................................TGTATACCTGTGGACTGTGACTT........................................................................................................................2311.001.00--------------------------1.00---------------
.......................................................................TGTGCTCCAATATGAGAGATGGCCAT.......................................................................................2611.001.00----1.00-------------------------------------
..................................................GTGGACTGTGACTTGCAGA...................................................................................................................1911.001.00-----------1.00------------------------------
....................................................................................................................................GTGTGCCCAGTGGACTCTGCA...............................2111.001.00--------1.00---------------------------------
................................................................GCAGAGCTGTGCTCCAATATGAGAGATG............................................................................................2811.001.00---------------------------1.00--------------
....................................................................................................................AGGACTGGAGGTGGCtggt.................................................19TGGT1.000.00---1.00--------------------------------------
.................................................................................................................GCAAGGACTGGAGGTGGCAGT..................................................2111.001.00------1.00-----------------------------------
....................................................................................................................AGGACTGGAGGTGGCAGTGTGCCCAG..........................................2611.001.00----1.00-------------------------------------
.................................................................................................................GCAAGGACTGGAGGTGGCAGTGTGCCC............................................2711.001.00-----------------1.00------------------------
..........................................................................................TGGCCATGCACCCGTGTCTCGGTGC.....................................................................2511.001.00-----------------------------1.00------------
...................................................TGGACTGTGACTTGCAGAGCTGTGCTCC.........................................................................................................2811.001.00-----------------1.00------------------------
............................................................................................................TCGGTGCAAGGACTGGAGGTGGCAGTGTG...............................................2911.001.00-------------------1.00----------------------
ATCTTGTGTCAGTGGTGTCCTTGATGCCCTTGGCTAGCTGCTGTATACCTGTGGACTGTGACTTGCAGAGCTGTGCTCCAATATGAGAGATGGCCATGCACCCGTGTCTCGGTGCAAGGACTGGAGGTGGCAGTGTGCCCAGTGGACTCTGCATGGGTAGCCGCGTGTAATGTCTATGGGTAAA
.....................................................................(((((.(((((.(((.....))).((.((((((........)))))).))..)))))...)))))..................................................
....................................................................69...............................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR037936(GSM510474)
293cand1. (cell line)		mjTestesWT1()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT2()
Testes Data. (testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
................GTCCTTGATGCCCTTGGCTAGCTGCTG............................................................................................................................................. 2712.002.002.00-----------------------------------------
......................................................................................................................................................GCATGGGTAGCCGCGTGTAATGTCTA........ 2612.002.002.00-----------------------------------------
...........................................................................................................................................tAGTGGACTCTGCATGGG........................... 18t1.000.00-------------1.00----------------------------
.................................tgtcCTGCTGTATACCTGT.................................................................................................................................... 19tgtc1.000.00-----------------------------------------1.00
............agcTGTCCTTGATGCCCTT......................................................................................................................................................... 19agc1.000.00------------------------1.00-----------------
.................................................................................................................................................ACTCTGCATGGGTAGCCGCGTGTAATG............ 2711.001.001.00-----------------------------------------
..........................................................................................................................................tgacTGGACTCTGCATGGG........................... 19tgac1.000.00------------------------------1.00-----------