ID: mmu-mir-669g
chr2:10398727-10398949 +
Display Libraries
(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
B-CELL 		(7)
BRAIN 		(3)
CELL-LINE 		(1)
DGCR8.mut 		(14)
EMBRYO 		(13)
ESC 		(5)
FIBROBLAST 		(2)
OTHER 		(4)
OTHER.mut 		(1)
SKIN 		(2)
SPLEEN 		(10)
TESTES 		(2)
THYMUS
Showing top 73 reads
ACTTCATTTGGAGACATCTTGGTATTAATGTCATGCAACCCATTTATGTGCATGTGTGCTTACTTGTATGTGCATTGTATGTGTTGACATGATATACATAACATAAACACACGTGTATCTGCAAGCACACACACACAGGAAAAATTGCATTCATTTATACGTTTGAATGATATGTGACTTAAAGTTTTCAAGATTATGCAGTAGTGGGACAGTGAATGGTTTT
.....................................................((((...(((.((((((..((.(((((((...............)))))))))..)))))).))))))).............(((((((......))))))).....................................................
.................................................................66.........................................................................................................173................................................
SizePerfect hitTotal NormPerfect NormSRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR029123(GSM416611)
NIH3T3. (cell line)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		GSM314558(GSM314558)
ESC wild type (454). (ESC)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
......................................................................TGCATTGTATGTGTTGACATGAT..................................................................................................................................23534.4034.4013.201.803.601.400.60-2.002.003.00--0.20--0.200.201.600.400.40-0.20-0.80-----------0.600.400.40--0.400.40-0.20-0.40---------------
...............................................................................................ACATAACATAAACACACacgt...........................................................................................................21ACGT26.000.002.003.00---7.002.00-1.00---3.003.00---------1.00--1.00--1.00-1.001.00---------------------------
......................................................................TGCATTGTATGTGTTGACATGA...................................................................................................................................22524.2024.2016.400.204.40----1.60------0.20--0.200.20-0.200.200.20-------------0.20------------0.20----------
.....................................................................GTGCATTGTATGTGTTGACATGA...................................................................................................................................23515.8015.803.80-1.803.603.80-0.401.00-------0.20--0.40-0.20--------------------------0.20------0.20-0.20---
..............CATCTTGGTATTAATGTCA..............................................................................................................................................................................................19511.8011.805.800.200.200.400.60-0.20---2.201.80---0.20----0.20---------------------------------------
......................................................................TGCATTGTATGTGTTGACATGATt.................................................................................................................................24T7.0034.401.800.200.20---0.200.801.20--0.20--0.20-0.200.40-0.20--------------0.20--0.40-----0.20------0.20-0.20--0.20----
...............ATCTTGGTATTAATGTCA..............................................................................................................................................................................................1853.803.803.40---------0.40-------------------------------------------------
....................................................................TGTGCATTGTATGTGTTGACATGA...................................................................................................................................2452.402.400.40-0.60-0.60--0.20-------0.20---0.20----------------------------0.20-----------
....................................................................TGTGCATTGTATGTGTTGACATG....................................................................................................................................2352.402.40-0.20-0.401.20------------0.200.20---------------------------0.20-------------
.................................TGCAACCCATTTATGTGCATG.........................................................................................................................................................................2112.002.00-2.00----------------------------------------------------------
................................................................................................CATAACATAAACACACacgt...........................................................................................................20ACGT2.000.00-----------1.00-------1.00----------------------------------------
.................................TGCAACCCATTTATGTGCATGa........................................................................................................................................................................22A2.002.00--------------2.00---------------------------------------------
.......................................................................GCATTGTATGTGTTGACATGATt.................................................................................................................................23T2.000.00---2.00--------------------------------------------------------
...............................................................................................ACATAACATAAACACACacgg...........................................................................................................21ACGG2.000.00---------------------------1.001.00-------------------------------
....................................................................................................................................................................................................TGCAGTAGTGGGACAGctga.......20CTGA2.000.00---------2.00--------------------------------------------------
.....................................................................GTGCATTGTATGTGTTGACATGAT..................................................................................................................................2451.601.600.20-0.40---0.200.20------------0.60---------------------------------------
....................................................................TGTGCATTGTATGTGTTGACATGt...................................................................................................................................24T1.402.40------0.40----------0.20--------------------0.40----0.20-0.20--------------
......................................................................TGCATTGTATGTGTTGACATGATA.................................................................................................................................2451.201.20----0.60--0.20--------0.20------------------------------------0.20------
...............................................................................................ACATAACATAAACACACccgt...........................................................................................................21CCGT1.000.00---------------------1.00--------------------------------------
....................................................................................................................................................................................................TGCAGTAGTGGGACAGctg........19CTG1.000.00---------1.00--------------------------------------------------
..............................................................................................................................................................................................................GGACAGTGAATGGTTTTtttt21TTTT1.000.00------------------------1.00-----------------------------------
..............................................................................................TACATAACATAAACACACacgt...........................................................................................................22ACGT1.000.00------1.00-----------------------------------------------------
...............................CATGCAACCCATTTATGTGCA...........................................................................................................................................................................2111.001.00--1.00---------------------------------------------------------
....................................................................................................................................................................................................TGCAGTAGTGGGACAGatgt.......20ATGT1.000.00---------1.00--------------------------------------------------
....................................................................................................................................................................................................TGCAGTAGTGGGACAGTtgc.......20TGC1.000.00-------------------------1.00----------------------------------
...............ATCTTGGTATTAATGaca..............................................................................................................................................................................................18ACA1.000.00----------1.00-------------------------------------------------
.............................................................................................ATACATAACATAAACACACGTGaa..........................................................................................................24AA1.000.00-1.00----------------------------------------------------------
....................................................................................................................................................................................................TGCAGTAGTGGGACAGatga.......20ATGA1.000.00---------1.00--------------------------------------------------
.................................TGCAACCCATTTATGTGCAT..........................................................................................................................................................................2011.001.00---------------1.00--------------------------------------------
...............................................................................................ACATAACATAAACACACacga...........................................................................................................21ACGA1.000.00-1.00----------------------------------------------------------
..........................................................................TTGTATGTGTTGACATGAT..................................................................................................................................1960.830.83-0.83----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATGAc..................................................................................................................................23C0.8024.20----0.20-0.40----0.20------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATGAct.................................................................................................................................24CT0.6024.200.20--------------0.40--------------------------------------------
..........................................................................TTGTATGTGTTGACAT.....................................................................................................................................16100.500.50-0.50----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACAT.....................................................................................................................................2050.400.40-----------------------------------------0.40------------------
................TCTTGGTATTAATGTCA..............................................................................................................................................................................................1750.400.400.40-----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATG....................................................................................................................................2150.400.40----------------------0.20-------------------0.20-----------------
....................................................................TGTGCATTGTATGTGTTGACATGAc..................................................................................................................................25C0.402.400.40-----------------------------------------------------------
.............................................................ACTTGTATGTGCATTGTATGTGTT..........................................................................................................................................2450.400.40-------0.20-------------------------------------------0.20--------
..............................................................................................................................................................ACGTTTGAATGATATGTGACTT...........................................2230.330.33------------------0.33-----------------------------------------
..........................................................................TTGTATGTGTTGACATGA...................................................................................................................................1860.330.33-0.33----------------------------------------------------------
........................................................................CATTGTATGTGTTGACATGAT..................................................................................................................................2160.330.33-0.33----------------------------------------------------------
............................................................TACTTGTATGTGCATTGTATGTGT...........................................................................................................................................2450.200.200.20-----------------------------------------------------------
.....................................................................GTGCATTGTATGTGTTGACATG....................................................................................................................................2250.200.20-----------------0.20------------------------------------------
.....................................................................GTGCATTGTATGTGTTGAC.......................................................................................................................................1950.200.20-0.20----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATta...................................................................................................................................22TA0.200.40-------0.20----------------------------------------------------
.....................................................................GTGCATTGTATGTGTTGACATGATA.................................................................................................................................2550.200.20------------------0.20-----------------------------------------
......................................................................TGCATTGTATGTGTTGACATGATc.................................................................................................................................24C0.2034.40-----------------0.20------------------------------------------
......................................................................TGCATTGTATGTGTTGACATtat..................................................................................................................................23TAT0.200.40--------0.20---------------------------------------------------
.....................................................................GTGCATTGTATGTGTTGACAT.....................................................................................................................................2150.200.20-----------------------------------0.20------------------------
......................................................................TGCATTGTATGTGTTGACATGAcc.................................................................................................................................24CC0.2024.20-------0.20----------------------------------------------------
....................................................................TGTGCATTGTATGTGTTGACAT.....................................................................................................................................2250.200.20--0.20---------------------------------------------------------
............................................................TACTTGTATGTGCATTGTATGTGTT..........................................................................................................................................2550.200.20-------------------0.20----------------------------------------
....................................................................TGTGCATTGTATGTGTTGACA......................................................................................................................................2150.200.20-0.20----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATaa...................................................................................................................................22AA0.200.400.20-----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATGATct................................................................................................................................25CT0.2034.400.20-----------------------------------------------------------
......................................................................TGCATTGTATGTGTTGACATGAat.................................................................................................................................24AT0.2024.20-----------------0.20------------------------------------------
......................................................................TGCATTGTATGTGTTGACATGAaa.................................................................................................................................24AA0.2024.20-------0.20----------------------------------------------------
.........................................................................ATTGTATGTGTTGACATG....................................................................................................................................1860.170.17-0.17----------------------------------------------------------
...........................................................................TGTATGTGTTGACATGAT..................................................................................................................................1860.170.17---------------------------------------------------------0.17--
..........................................................................TTGTATGTGTTGACATGt...................................................................................................................................18T0.170.17-0.17----------------------------------------------------------
..........................................................................TTGTATGTGTTGACATG....................................................................................................................................1760.170.17-0.17----------------------------------------------------------
.........................................................................ATTGTATGTGTTGACATGAT..................................................................................................................................2060.170.17-0.17----------------------------------------------------------
........................................................................................................................................................................................................GTAGTGGGACAGTGAATGGTTTT2370.140.14----------------------------------------------------------0.14-
...............................................GTGCATGTGTGCTTACTTG.............................................................................................................................................................1970.140.14-0.14----------------------------------------------------------
.............................................................................................ATACATAACATAAACACACGTGT...........................................................................................................2370.140.14---------------------------------------------0.14--------------
.....................................................................................GACATGATATACATAACATAAA....................................................................................................................2270.140.14--------------0.14---------------------------------------------
.................CTTGGTATTAATGTCA..............................................................................................................................................................................................1680.120.120.12-----------------------------------------------------------
.....................................................................................................................................................................................................GCAGTAGTGGGACAGTGAAT......2080.120.12-------------------------------------0.12----------------------
.............................................................................................................................................................................................................GGGACAGTGAATGGTTTT1890.110.11------------------0.11-----------------------------------------
.............................................................................................................................................AAATTGCATTCATTTATACGTTTG..........................................................24100.100.10-----------------------------------------------------------0.10
ACTTCATTTGGAGACATCTTGGTATTAATGTCATGCAACCCATTTATGTGCATGTGTGCTTACTTGTATGTGCATTGTATGTGTTGACATGATATACATAACATAAACACACGTGTATCTGCAAGCACACACACACAGGAAAAATTGCATTCATTTATACGTTTGAATGATATGTGACTTAAAGTTTTCAAGATTATGCAGTAGTGGGACAGTGAATGGTTTT
.....................................................((((...(((.((((((..((.(((((((...............)))))))))..)))))).))))))).............(((((((......))))))).....................................................
.................................................................66.........................................................................................................173................................................
SizePerfect hitTotal NormPerfect NormSRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR029123(GSM416611)
NIH3T3. (cell line)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		GSM314558(GSM314558)
ESC wild type (454). (ESC)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
..............................................................................................................................gccCACACACAGGAAAAA............................................................................... 18gcc1.000.00---------------------------------1.00--------------------------
..........................................................................................................................................................................ccacTGACTTAAAGTTTTC.................................. 19ccac1.000.001.00-----------------------------------------------------------
.........ctgGACATCTTGGTATTA.................................................................................................................................................................................................... 18ctg1.000.00------------------------------1.00-----------------------------