ID: mmu-mir-5135
chr12:77634071-77634249 -
Display Libraries
(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(4)
BRAIN 		(1)
CELL-LINE 		(1)
DGCR8.mut 		(5)
EMBRYO 		(7)
ESC 		(4)
FIBROBLAST 		(1)
KIDNEY 		(6)
LIVER 		(2)
LYMPH 		(7)
OTHER 		(2)
OTHER.mut 		(2)
PANCREAS 		(1)
PIWI.mut 		(5)
SKIN 		(1)
SPLEEN 		(6)
TESTES 		(1)
THYMUS 		(2)
TOTAL-RNA
Showing top 86 reads
TGATATCACGCCGAGAGGGCAACGAAAGCCTCCAGACCAGGTTCCGACCAGAGAGGACTCGGAGCCCAGCCACCTAGACTTTCCCAGGAGAAGCGCAGGTCTAGGTGGCAAGGGCGTCCTGGTCCTACTGGAGCAGGTCACCACGACCGCTGAGTCAGAAAGGCACGTCTCGAATTCCT
..................................................((((((((((((((....))).......)))))))))))..(((((......))))).....................................................
.....................................................................70.........................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverWT1()
Liver Data. (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		mjTestesWT3()
Testes Data. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073955(GSM629281)
total RNA. (blood)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		mjTestesWT2()
Testes Data. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
.................................................AGAGAGGACTCGGAGCCCAGC.............................................................................................................2117.007.00--7.00------------------------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTGG.........................................................2316.006.002.00--1.00---1.00----------1.00-------------1.00------------------------------
..............................................ACCAGAGAGGACTCGGAG...................................................................................................................1814.004.00---1.00---------1.00-----------1.00--------1.00----------------------------
..............................................................................................GCAGGTCTAGGTGGCAAGGGCGT..............................................................2314.004.001.00-------1.00------------1.00-------------------1.00---------------------
.................................................AGAGAGGACTCGGAGCC.................................................................................................................1713.003.00--------------2.00---------------------------1.00--------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTG..........................................................2213.003.001.00-------1.00----------------------------------------------1.00-------
...................................................................................................TCTAGGTGGCAAGGGCGTCCT...........................................................2113.003.001.00----1.00--------------------------------------------------1.00------
...................................................................................................TCTAGGTGGCAAGGGCGTC.............................................................1912.002.001.00--------1.00-----------------------------------------------------
....................................................................................................................TCCTGGTCCTACTGGgccc............................................19GCCC2.000.00------------------------------------------------1.00-------------1.00
..............................................................................................GCAGGTCTAGGTGGCAAGGGCGTCt............................................................25T2.000.001.00----------------1.00---------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGgc.............................................................19GC2.000.001.00----1.00---------------------------------------------------------
..............................................ACCAGAGAGGACTCGGAGCaa................................................................................................................21AA2.000.00-----------2.00---------------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTGt.........................................................23T2.003.001.00---------------------1.00----------------------------------------
..............................................................................................GCAGGTCTAGGTGGCAAGGGCG...............................................................2212.002.001.001.00-------------------------------------------------------------
....................................CCAGGTTCCGACCAGAGAGGACTCGGAG...................................................................................................................2812.002.00-------------1.00---------------------------------------------1.00---
..............................................................................................GCAGGTCTAGGTGGCAAGGGCGTt.............................................................24T2.004.00-----1.00-----------1.00---------------------------------------------
...........................................................................AGACTTTCCCAGGAGAAGCGCAGG................................................................................2412.002.00-2.00-------------------------------------------------------------
..............................................................................................GCAGGTCTAGGTGGCAAGGGCat..............................................................23AT2.000.002.00--------------------------------------------------------------
..............................................................................................GCAGGTCTAGGTGGCAAG...................................................................1812.002.001.00--------------------------------------------------1.00-----------
........................................GTTCCGACCAGAGAGGACTCGG.....................................................................................................................2212.002.00-------------------2.00-------------------------------------------
...............................................................GCCCAGCCACCTAGAC....................................................................................................1611.001.00---------------------------------1.00-----------------------------
..........................................................................................AAGCGCAGGTCTAGGTG........................................................................1711.001.00----------------------------------------1.00----------------------
..............................................................................................GCAGGTCTAGGTGGCAAGG..................................................................1911.001.001.00--------------------------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTt.............................................................19T1.000.001.00--------------------------------------------------------------
..................................................................................................................CGTCCTGGTCCTACTGGAGCAGGTCACCACGACCG..............................3511.001.00---1.00-----------------------------------------------------------
................................................................................................AGGTCTAGGTGGCAAGGGCGTtt............................................................23TT1.000.001.00--------------------------------------------------------------
................................................................................................AGGTCTAGGTGGCAAGGGCGTt.............................................................22T1.000.001.00--------------------------------------------------------------
................................................................................................AGGTCTAGGTGGCAAGGG.................................................................1811.001.00-------------------------------------------1.00-------------------
...............................................CCAGAGAGGACTCGGAGCC.................................................................................................................1911.001.00-----------------------1.00---------------------------------------
................................................CAGAGAGGACTCGGAGC..................................................................................................................1711.001.00-------------------------------------------------1.00-------------
...........................................................................................AGCGCAGGTCTAGGTGGCAAGGG.................................................................2311.001.00---------------------1.00-----------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTGGTtt......................................................26TT1.000.001.00--------------------------------------------------------------
............................................CGACCAGAGAGGACTCGGAGCCCAGCCACCTAGAC....................................................................................................3511.001.00---1.00-----------------------------------------------------------
....................AACGAAAGCCTCCAGACCAG...........................................................................................................................................2011.001.00---1.00-----------------------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTGta........................................................24TA1.003.00--------------------------------------1.00------------------------
.............................................................................................................................TACTGGAGCAGGTCACCACGACCGCTGA..........................2811.001.00----------1.00----------------------------------------------------
.....................................................................................................TAGGTGGCAAGGGCGTCCT...........................................................1911.001.001.00--------------------------------------------------------------
..............................................................................................................AGGGCGTCCTGGTCCTca...................................................18CA1.000.00----------------1.00----------------------------------------------
..........................................................................TAGACTTTCCCAGGAGAAGCGCAGGT...............................................................................2611.001.00------------------------------------------------------1.00--------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTGag........................................................24AG1.003.00--------------------1.00------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTaat........................................................24AAT1.003.00---------1.00-----------------------------------------------------
.......................................................GACTCGGAGCCCAGCCAC..........................................................................................................1811.001.00-------1.00-------------------------------------------------------
..............................................ACCAGAGAGGACTCGGAGCCC................................................................................................................2111.001.00----------------------------------------------1.00----------------
...........................................................CGGAGCCCAGCCACCTAGAC....................................................................................................2011.001.00-----------------------------------------------1.00---------------
..............................................................................................GCAGGTCTAGGTGGCAAGGGCGTa.............................................................24A1.004.001.00--------------------------------------------------------------
...............................................................................................CAGGTCTAGGTGGCAAGGGCGTCt............................................................24T1.000.00---1.00-----------------------------------------------------------
................................................CAGAGAGGACTCGGAGCCCA...............................................................................................................2011.001.00---------------------------------------1.00-----------------------
.............................................................GAGCCCAGCCACCTAGACT...................................................................................................1911.001.00-------------------------------------------------------------1.00-
..........................................TCCGACCAGAGAGGACTCGG.....................................................................................................................2011.001.00---------------------------------------------------------1.00-----
..................................................GAGAGGACTCGGAGCCCAGCCA...........................................................................................................2211.001.00---------------------------1.00-----------------------------------
................................................CAGAGAGGACTCGGAGCC.................................................................................................................1811.001.00---1.00-----------------------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTGa.........................................................23A1.003.00-----------------------------1.00---------------------------------
TGATATCACGCCGAGAGGGCAACGAAAGCCTCCAGACCAGGTTCCGACCAGAGAGGACTCGGAGCCCAGCCACCTAGACTTTCCCAGGAGAAGCGCAGGTCTAGGTGGCAAGGGCGTCCTGGTCCTACTGGAGCAGGTCACCACGACCGCTGAGTCAGAAAGGCACGTCTCGAATTCCT
..................................................((((((((((((((....))).......)))))))))))..(((((......))))).....................................................
.....................................................................70.........................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverWT1()
Liver Data. (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		mjTestesWT3()
Testes Data. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073955(GSM629281)
total RNA. (blood)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		mjTestesWT2()
Testes Data. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
............................................................................................gccCAGGTCTAGGTGGCA..................................................................... 18gcc4.000.00----4.00----------------------------------------------------------
.................................................................................................GGTCTAGGTGGCAAGGGCGTCCTG.......................................................... 2412.002.00-2.00-------------------------------------------------------------
.................................................................................................aGTCTAGGTGGCAAGGGCGTCCTG.......................................................... 24a2.001.00------------2.00--------------------------------------------------
.........GCCGAGAGGGCAACGAAAGC...................................................................................................................................................... 2012.002.00-2.00-------------------------------------------------------------
..................................................................................................................................................CCGCTGAGTCAGAAAGG................ 1712.002.00------2.00--------------------------------------------------------
..............................................................................................GCAGGTCTAGGTGGCAAGGG................................................................. 2012.002.00------------------1.00-------------------------------1.00------------
....................................................................................................................................................GCTGAGTCAGAAAGGCACGTC.......... 2112.002.00------2.00--------------------------------------------------------
..............................................................................................GCAGGTCTAGGTGGCAAGG.................................................................. 1911.001.00----------------------------1.00----------------------------------
........................ttAGCCTCCAGACCAGGT......................................................................................................................................... 18tt1.000.00----------------1.00----------------------------------------------
..................................................................................................aTCTAGGTGGCAAGGGCGTC............................................................. 20a1.000.00------------------------1.00--------------------------------------
........................................................ACTCGGAGCCCAGCCACCTAG...................................................................................................... 2111.001.00------------------------------------------------------------1.00--
..................................................................................................GTCTAGGTGGCAAGGGCGTCCTG.......................................................... 2311.001.00-----1.00---------------------------------------------------------
................................CAGACCAGGTTCCGACCAGAGAG............................................................................................................................ 2311.001.00-------1.00-------------------------------------------------------
............................CCTCCAGACCAGGTTCCGACCAGAGA............................................................................................................................. 2611.001.00--------------------1.00------------------------------------------
...................................................................................................TCTAGGTGGCAAGGGCGTCCTG.......................................................... 2211.001.001.00--------------------------------------------------------------
.................................................................................................GGTCTAGGTGGCAAGGGCGTC............................................................. 2111.001.001.00--------------------------------------------------------------
.................tcCAACGAAAGCCTCCAG................................................................................................................................................ 18tc1.000.00-------------------------------1.00-------------------------------
......................CGAAAGCCTCCAGACCAGGTTCCGACCAGA............................................................................................................................... 3011.001.00----------------------------------------------------1.00----------
.................................................................................................tGTCTAGGTGGCAAGGGCGTC............................................................. 21t1.000.00-----------------------------------------------------1.00---------
.................................................................CCAGCCACCTAGACTTTC................................................................................................ 1811.001.00------------------------------------1.00--------------------------
.......................................................tACTCGGAGCCCAGCCACCTAGA..................................................................................................... 23t1.001.00---------------------------------------------1.00-----------------
.................................................................................................GGTCTAGGTGGCAAGGGCGTCCT........................................................... 2311.001.00---------------1.00-----------------------------------------------
..............................................................................................ttAGGTCTAGGTGGCAAGGGCGT.............................................................. 23tt1.001.001.00--------------------------------------------------------------
...................................................................................................................aaCCTGGTCCTACTGGA............................................... 17aa1.000.00--------------------------------------------1.00------------------
.................................................................................................GGTCTAGGTGGCAAGGGCGTCCTGGT........................................................ 2611.001.00-----------------------------------1.00---------------------------
........................................................ACTCGGAGCCCAGCCACCTAGA..................................................................................................... 2211.001.00--------1.00------------------------------------------------------
................................................................................................AGGTCTAGGTGGCAAGGGCGT.............................................................. 2111.001.00------------------------------1.00--------------------------------
.....................................CAGGTTCCGACCAGAGAG............................................................................................................................ 1811.001.00--------------------------1.00------------------------------------
....................................................................................................CTAGGTGGCAAGGGCGTCCTG.......................................................... 2111.001.001.00--------------------------------------------------------------
.....................................................ttaACTCGGAGCCCAGCCACCTAG...................................................................................................... 24tta1.001.00----------------------------------------------------------1.00----
...........................................................................................................................................................CAGAAAGGCACGTCTCGA...... 1811.001.00---------------1.00-----------------------------------------------
...........................................................................AGACTTTCCCAGGAGAAGCGCAGGTC.............................................................................. 2611.001.00----------1.00----------------------------------------------------
.........................................................................................................TGGCAAGGGCGTCCTGGTCCTAC................................................... 2311.001.00-------------------------------------1.00-------------------------
............................................................GGAGCCCAGCCACCTAGA..................................................................................................... 1820.500.500.50--------------------------------------------------------------
........................AAAGCCTCCAGACCA............................................................................................................................................ 15100.100.10----------------------0.10----------------------------------------