ID: mmu-mir-5112
chr18:82889623-82889782 +
Display Libraries
(11)
AGO2.ip 		(1)
B-CELL 		(20)
BRAIN 		(4)
CELL-LINE 		(10)
EMBRYO 		(7)
ESC 		(2)
LIVER 		(3)
OTHER 		(3)
OTHER.mut 		(4)
SPLEEN 		(5)
TESTES 		(2)
THYMUS 		(1)
TOTAL-RNA
Showing top 94 reads
CACAGTTCCATGTGAATGCTGGAGTCTTACAAAGAGGGTTGAAGGCTGAGGGCTGGGGTGTAGCTCAGCGGGAGAGCACCTGCTTCATCCCCAGCTACATTTCCAGTGCCACCCAAAACAAAACAAGACGAAAGTCAGCCCAGGAAAATCCAGATTCAAT
...................................................((((((((((((((....((((((((....))))..)))).))))))))).))))).....................................................
..................................................51.........................................................110................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR059771(GSM562833)
CD4_control. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR206941(GSM723282)
other. (brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		mjTestesWT3()
Testes Data. (testes)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR206942(GSM723283)
other. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)
.........................................................GTGTAGCTCAGCGGGAGAGC...................................................................................20123.0023.0018.002.002.00-1.00------------------------------------------------------
...........................................................GTAGCTCAGCGGGAGAGCA..................................................................................1918.008.003.00--1.00--1.00-----1.00----------------------1.00---1.00-------------------
.........................................................GTGTAGCTCAGCGGGAGAGCA..................................................................................2118.008.001.00-2.00------3.00-----2.00-------------------------------------------
...........................................................GTAGCTCAGCGGGAGAGC...................................................................................1826.006.003.50--0.500.50-----0.50--------0.50----------------------------------0.50----
.........................................................GTGTAGCTCAGCGGGAGA.....................................................................................1824.504.502.500.500.50--0.50-0.50---------------------------------------------------
.........................................................GTGTAGCTCAGCGGGAGAGCACt................................................................................23T4.002.00-------2.002.00--------------------------------------------------
.........................................................GTGTAGCTCAGCGGGAGAG....................................................................................1924.004.000.50-0.50-1.000.50-------------------------------------1.00-------0.50-------
............................................................TAGCTCAGCGGGAGAGCA..................................................................................1824.004.00---2.50--------0.50----------1.00-----------------------------------
...........................................................GTAGCTCAGCGGGAGAGCACt................................................................................21T4.002.003.00--------------------------------1.00-------------------------
......................................................GGGGTGTAGCTCAGCttgg.......................................................................................19TTGG3.000.00-1.00----------------1.00-------1.00--------------------------------
...........................................................GTAGCTCAGCGGGAGAG....................................................................................1742.502.501.25----0.50-------0.25------------------------------------0.50--------
...........................................................GTAGCTCAGCGGGAGA.....................................................................................1642.252.251.00----0.25----0.25------------------------------------0.75-----------
...........................................................GTAGCTCAGCGGGAGAGCAt.................................................................................20T2.008.00---1.00---------1.00---------------------------------------------
......................................................GGGGTGTAGCTCAGCtggg.......................................................................................19TGGG2.000.00-------1.00----------------------1.00----------------------------
...........................................................GTAGCTCAGCGGGAGAGCAC.................................................................................2012.002.00------------------1.00--------------------------1.00-------------
.........................................................GTGTAGCTCAGCGGGAGAGCAC.................................................................................2212.002.00---------1.00----1.00--------------------------------------------
..........................................................TGTAGCTCAGCGGGAGAGC...................................................................................1921.501.501.00-----------------------------------------------0.50----------
...............................................................CTCAGCGGGAGAGCACCT...............................................................................1821.501.50--------------------1.50--------------------------------------
............................................................TAGCTCAGCGGGAGAGCACtcc..............................................................................22TCC1.501.00----------------1.00--------0.50---------------------------------
.........................................................GTGTAGCTCAGCGGGA.......................................................................................1631.331.330.330.33--0.33-----0.33------------------------------------------------
......................................................GGGGTGTAGCTCAGCGaa........................................................................................18AA1.000.00-----------1.00-----------------------------------------------
........................................................GGTGTAGCTCAGCGGtaaa.....................................................................................19TAAA1.000.00-----------------------------1.00-----------------------------
.....................................................TGGGGTGTAGCTCAGatgg........................................................................................19ATGG1.000.00----1.00------------------------------------------------------
......................................................GGGGTGTAGCTCAGCGGGAGAGCAtgc...............................................................................27TGC1.000.00-----------1.00-----------------------------------------------
..................................AGGGTTGAAGGCTGAGag............................................................................................................18AG1.000.00-----------------1.00-----------------------------------------
..........................................AGGCTGAGGGCTGGGcg.....................................................................................................17CG1.000.00--------------------------------------1.00--------------------
......................................................................GGAGAGCACCTGCTTtgc........................................................................18TGC1.000.00-------1.00---------------------------------------------------
.................................................................................................................................GAAAGTCAGCCCAGGctt.............18CTT1.000.00----------------------------1.00------------------------------
..............................................................GCTCAGCGGGAGAGCACCTcgt............................................................................22CGT1.000.00------1.00----------------------------------------------------
......................................................GGGGTGTAGCTCAGCGGG........................................................................................1811.001.00-1.00---------------------------------------------------------
..............................................................GCTCAGCGGGAGAGCACCTcgtt...........................................................................23CGTT1.000.00--------------1.00--------------------------------------------
......................................................GGGGTGTAGCTCAGCGGGAGAGggt.................................................................................25GGT1.000.00---------------------------1.00-------------------------------
............................................................TAGCTCAGCGGGAGAGCACCTcg.............................................................................23CG1.000.00----------------------------------1.00------------------------
.............................................................AGCTCAGCGGGAGAGCACtatg.............................................................................22TATG1.000.00----------------1.00------------------------------------------
............................................................................CACCTGCTTCATCCCgcca.................................................................19GCCA1.000.00------------------------------------1.00----------------------
..............................................................GCTCAGCGGGAGAGCgctt...............................................................................19GCTT1.000.00----------1.00------------------------------------------------
.........................................................GTGTAGCTCAGCGGGAGAGCACta...............................................................................24TA1.002.00-1.00---------------------------------------------------------
.............................................................AGCTCAGCGGGAGAGCACtac..............................................................................21TAC1.000.00-------------1.00---------------------------------------------
................................AGAGGGTTGAAGGCTca...............................................................................................................17CA1.000.00------------------------1.00----------------------------------
.......................................................GGGTGTAGCTCAGCGGGAGAGCACgtgc.............................................................................28GTGC1.000.00--------------------------------1.00--------------------------
..........................................................TGTAGCTCAGCGGGAGAGCA..................................................................................2011.001.00--1.00--------------------------------------------------------
.......................................................GGGTGTAGCTCAGCGGcaga.....................................................................................20CAGA1.000.00--------------------------------------------1.00--------------
.........................................................GTGTAGCTCAGCGGGAGAGCACtacg.............................................................................26TACG1.002.00----------------------------------------------1.00------------
..............................................................GCTCAGCGGGAGAGCACCTcg.............................................................................21CG1.000.00-------------------1.00---------------------------------------
...........................................................GTAGCTCAGCGGGAGAGCACCT...............................................................................2211.001.00----------1.00------------------------------------------------
.............................................................AGCTCAGCGGGAGAGCACCTc..............................................................................21C1.001.00--------1.00--------------------------------------------------
......................................................................GGAGAGCACCTGCTTCgcaa......................................................................20GCAA1.000.00--------1.00--------------------------------------------------
..........................................................TGTAGCTCAGCGGGAGAGCACtac..............................................................................24TAC1.000.00----1.00------------------------------------------------------
......................................................GGGGTGTAGCTCAGCGGGAGAGCACt................................................................................26T1.000.00-1.00---------------------------------------------------------
....................................................................................................................................AGTCAGCCCAGGAAAAga..........18GA1.000.00-----1.00-----------------------------------------------------
............................................................TAGCTCAGCGGGAGAGCAC.................................................................................1921.001.00------0.50---0.50------------------------------------------------
..............................................................................................................................GACGAAAGTCAGCCCt..................16T1.000.00-------------------------------1.00---------------------------
..........................................................TGTAGCTCAGCGGGAGAGCACatgc.............................................................................25ATGC1.000.00-----------------------------------------1.00-----------------
.....................................................TGGGGTGTAGCTCAGtttt........................................................................................19TTTT1.000.00----------------------------------------1.00------------------
.....................................................TGGGGTGTAGCTCAGCcgc........................................................................................19CGC1.000.00-------------------------------------1.00---------------------
.............................................................AGCTCAGCGGGAGAGCACCT...............................................................................2011.001.00------1.00----------------------------------------------------
..............................................................GCTCAGCGGGAGAGCAC.................................................................................1740.750.75------0.50------------------0.25---------------------------------
............................................................TAGCTCAGCGGGAGAGC...................................................................................1730.670.67---0.33--------0.33----------------------------------------------
..............................................................GCTCAGCGGGAGAGCACtac..............................................................................20TAC0.500.75-----0.50-----------------------------------------------------
..........................................................TGTAGCTCAGCGGGAGAGCgc.................................................................................21GC0.501.50----------------------------------------------------0.50------
.....................................................................GGGAGAGCACCTGCTT...........................................................................1660.500.50-----0.17------0.33----------------------------------------------
............................................................TAGCTCAGCGGGAGAGCAtg................................................................................20TG0.504.00-----------------------------------------------------0.50-----
............................................................TAGCTCAGCGGGAGAGCAtc................................................................................20TC0.504.00-----0.50-----------------------------------------------------
..........................................................TGTAGCTCAGCGGGAGA.....................................................................................1740.500.500.50----------------------------------------------------------
.........................................................GTGTAGCTCAGCGGGAG......................................................................................1720.500.500.50----------------------------------------------------------
...............................................................CTCAGCGGGAGAGCACCTcgt............................................................................21CGT0.501.50-------------------------------------------------0.50---------
.............................................................AGCTCAGCGGGAGAGC...................................................................................1670.430.43------------0.14-0.140.14-------------------------------------------
...............................................................CTCAGCGGGAGAGCAC.................................................................................1650.400.40------------0.20-------------------------------------------0.20--
............................................................TAGCTCAGCGGGAGA.....................................................................................1560.330.33-------------------------0.33---------------------------------
............................................................TAGCTCAGCGGGAGAGCgct................................................................................20GCT0.330.67-0.33---------------------------------------------------------
..............................................................GCTCAGCGGGAGAGCA..................................................................................1660.330.33------0.17--------------------------------------------------0.17-
...........................................................GTAGCTCAGCGGGAGAagcg.................................................................................20AGCG0.252.25-------------------------------------------------0.25---------
..............................................................GCTCAGCGGGAGAGCACtacg.............................................................................21TACG0.250.75------------------------------------------------0.25----------
................................................................TCAGCGGGAGAGCACtac..............................................................................18TAC0.250.25-----0.12----0.12------------------------------------------------
.............................................................AGCTCAGCGGGAGAGCA..................................................................................1740.250.25------0.25----------------------------------------------------
...........................................................GTAGCTCAGCGGGAGAtcac.................................................................................20TCAC0.252.25-----0.25-----------------------------------------------------
................................................................TCAGCGGGAGAGCAC.................................................................................1580.250.25-----------------------0.25-----------------------------------
...............................................................CTCAGCGGGAGAGCACtacc.............................................................................20TACC0.200.40------------0.20----------------------------------------------
...............................................................CTCAGCGGGAGAGCACtacg.............................................................................20TACG0.200.40------------0.20----------------------------------------------
...............................................................CTCAGCGGGAGAGCACtc...............................................................................18TC0.200.40------0.20----------------------------------------------------
............................................................TAGCTCAGCGGGAGAG....................................................................................1650.200.20-----0.20-----------------------------------------------------
...........................................................GTAGCTCAGCGGGAG......................................................................................1550.200.20-----------------------------------------------0.20-----------
...............................................................CTCAGCGGGAGAGCACtac..............................................................................19TAC0.200.40-----0.20-----------------------------------------------------
.....................................................................GGGAGAGCACCTGCTTtgc........................................................................19TGC0.170.50----------------------------------------------------------0.17
............................................................TAGCTCAGCGGGAGAaca..................................................................................18ACA0.170.33---0.17-------------------------------------------------------
................................................................TCAGCGGGAGAGCACtacc.............................................................................19TACC0.120.25------------------------0.12----------------------------------
................................................................TCAGCGGGAGAGCACtacg.............................................................................19TACG0.120.25-----0.12-----------------------------------------------------
......................................................GGGGTGTAGCTCAGCGG.........................................................................................1780.120.12--------------------------------------------------------0.12--
................................................................TCAGCGGGAGAGCACgacg.............................................................................19GACG0.120.25-------------------0.12---------------------------------------
CACAGTTCCATGTGAATGCTGGAGTCTTACAAAGAGGGTTGAAGGCTGAGGGCTGGGGTGTAGCTCAGCGGGAGAGCACCTGCTTCATCCCCAGCTACATTTCCAGTGCCACCCAAAACAAAACAAGACGAAAGTCAGCCCAGGAAAATCCAGATTCAAT
...................................................((((((((((((((....((((((((....))))..)))).))))))))).))))).....................................................
..................................................51.........................................................110................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR059771(GSM562833)
CD4_control. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR206941(GSM723282)
other. (brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		mjTestesWT3()
Testes Data. (testes)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR206942(GSM723283)
other. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)
.......................................................gtgcGTAGCTCAGCGGGAG...................................................................................... 19gtgc2.000.00---------------------1.001.00------------------------------------
.......................................................acgcGTAGCTCAGCGGGAGAGCA.................................................................................. 23acgc1.000.00------------------------------------------1.00----------------
.......................................................................................TCCCCAGCTACATTTC......................................................... 1611.001.00-----------------1.00-----------------------------------------
..............................................................................ggaGCTTCATCCCCAGCT................................................................ 18gga1.000.00-----------1.00-----------------------------------------------
.............................................................AGCTCAGCGGGAGAGCAC................................................................................. 1830.670.67---------------------0.330.33------------------------------------
..........................................................................................CCAGCTACATTTCCAG...................................................... 1660.330.33-------------------------------------------------------0.33---