mmu-mir-3960

Display Libraries
(1) AGO1.ip	(1) AGO2.ip	(1) AGO3.ip	(4) B-CELL	(10) BRAIN	(3) CELL-LINE	(4) EMBRYO	(3) ESC	(1) FIBROBLAST	(1) KIDNEY	(5) LIVER	(1) LYMPH	(3) OTHER	(7) OTHER.mut	(2) SKIN	(2) SPLEEN	(10) TESTES

CGGCCCGGGCCAATGCAGCGGGACGCACCGCCGCGAGCCCCAGCCCCAGCGCCACGGCTTCCTGCGCCCCCGATCGGGGCCGCCAACAGCGCTGGCGGCGGCGGCGGAGGCGGGGGCAGTGGCGGCGGCGGAGGCTCCTCTGCAGCTCCGGCTCCCCCTGGCCTCCCGGGAAC
..................................................(((((.((..((...(((.(((.(((..(((((((.......)))))))..)))))).)))))..)).)))))..................................................
..................................................51......................................................................123................................................

Size

Perfect hit

Total Norm

Perfect Norm

mjLiverKO2()
Liver Data. (Zcchc11 liver)

SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)

SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)

SRR039610(GSM527274)
small RNA-Seq. (brain)

SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)

GSM416732(GSM416732)
MEF. (cell line)

SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)

SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)

SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)

SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)

SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)

GSM509280(GSM509280)
small RNA cloning by length. (testes)

mjTestesKO7()
Testes Data. (Zcchc11 testes)

SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)

SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)

GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)

SRR038744(GSM527279)
small RNA-Seq. (brain)

SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)

SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)

SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)

SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)

SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)

mjTestesKO5()
Testes Data. (Zcchc11 testes)

SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)

mjTestesKO6()
Testes Data. (Zcchc11 testes)

SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)

SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)

GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)

mjTestesWT3()
Testes Data. (testes)

SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)

SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)

SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)

GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)

SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)

SRR037935(GSM510473)
293cand3. (cell line)

SRR037924(GSM510462)
e9p5_rep2. (embryo)

SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)

Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)

SRR402762(SRX117945)
source: ES E14 male cells. (ESC)

SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)

SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)

SRR306534(GSM750577)
19-24nt. (ago2 brain)

Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)

SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

SRR206942(GSM723283)
other. (brain)

SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)

SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)

mjTestesWT2()
Testes Data. (testes)

.....CGGGCCAATGCAGCGGGACGCA..................................................................................................................................................

13.00

.....CGGGCCAATGCAGCGGGA......................................................................................................................................................

3.00

1.00

..................................................................................................................................................TCCGGCTCCCCCTGGCCTCCCG.....

1.00

...CCCGGGCCAATGCAGCGGGACGCA..................................................................................................................................................

1.00

........................................................................................................................................................TCCCCCTGGCCTCCCGGGA..

1.00

..............................................................TGCGCCCCCGATCGGGGCCGCCAgt......................................................................................

1.00

0.00

1.00

.....CGGGCCAATGCAGCGGGACGa...................................................................................................................................................

1.00

0.00

1.00

.....CGGGCCAATGCAGCGGGAggca..................................................................................................................................................

GGCA

1.00

3.00

1.00

.................................................................................................GCGGCGGCGGAGGCGttt..........................................................

TTT

0.50

0.00

0.50

..........................................................................................GCTGGCGGCGGCGGCtact................................................................

TACT

0.50

0.00

0.50

................................................................................................GGCGGCGGCGGAGGCaaaa..........................................................

AAAA

0.50

0.00

0.50

..............................................................................................GCGGCGGCGGCGGAGGtggt...........................................................

TGGT

0.50

0.00

0.50

........................................................................................................CGGAGGCGGGGGCAGagct..................................................

AGCT

0.50

0.00

0.50

..............................................................................................GCGGCGGCGGCGGAGGagcg...........................................................

AGCG

0.50

0.00

0.50

...................................................................................................................................AGGCTCCTCTGCAGCTCCGGCTCt..................

0.50

0.00

0.50

...............................................................................................CGGCGGCGGCGGAGGCtctt..........................................................

TCTT

0.50

0.00

0.50

.........................................................................................................................GCGGCGGCGGAGGCTgaa..................................

GAA

0.50

0.00

0.50

..................................................................................................CGGCGGCGGAGGCGGcctt........................................................

CCTT

0.50

0.00

0.50

..............................................................................................GCGGCGGCGGCGGAGGCGGGGGgggt.....................................................

GGGT

0.50

0.00

0.50

..................................................................................................CGGCGGCGGAGGCGGGGGggt......................................................

GGT

0.50

0.00

0.50

...........................................................................................CTGGCGGCGGCGGCGactc...............................................................

ACTC

0.50

0.00

0.50

..........................................................................................GCTGGCGGCGGCGGCGact................................................................

ACT

0.50

0.00

0.50

............................................................................................................................................TGCAGCTCCGGCTCCCCCTGGt...........

0.50

0.00

0.50

..........................................................................................GCTGGCGGCGGCGGCGGctct..............................................................

CTCT

0.50

0.00

0.50

............................................................................................TGGCGGCGGCGGCGGgac...............................................................

GAC

0.50

0.00

0.50

..............................................................................................GCGGCGGCGGCGGAGGCGGGGGaggt.....................................................

AGGT

0.50

0.00

0.50

................................................................................................GGCGGCGGCGGAGGCGGta..........................................................

0.50

0.00

0.50

........................................................................................................CGGAGGCGGGGGCAGTcg...................................................

0.50

0.00

0.50

.................................................................................................GCGGCGGCGGAGGCGGGattt.......................................................

ATTT

0.50

0.00

0.50

................................................................................................GGCGGCGGCGGAGGCGGtaa.........................................................

TAA

0.50

0.00

0.50

............................................................................................TGGCGGCGGCGGCGGAGa...............................................................

0.50

0.00

0.50

..........................................................................................GCTGGCGGCGGCGGCGGccct..............................................................

CCCT

0.50

0.00

0.50

.......................................................................................................................................................CTCCCCCTGGCCTCCtctt...

TCTT

0.50

0.00

0.50

.....................................................................................................CGGCGGAGGCGGGGGCcgc.....................................................

CGC

0.50

0.00

0.50

............................................................................................................................................TGCAGCTCCGGCTCCCCCTGGCt..........

0.50

0.00

0.50

.......................................................................................................................................TCCTCTGCAGCTCCGtcgc...................

TCGC

0.50

0.00

0.50

...................................AGCCCCAGCCCCAGCGCCA.......................................................................................................................

0.25

CGGCCCGGGCCAATGCAGCGGGACGCACCGCCGCGAGCCCCAGCCCCAGCGCCACGGCTTCCTGCGCCCCCGATCGGGGCCGCCAACAGCGCTGGCGGCGGCGGCGGAGGCGGGGGCAGTGGCGGCGGCGGAGGCTCCTCTGCAGCTCCGGCTCCCCCTGGCCTCCCGGGAAC ..................................................(((((.((..((...(((.(((.(((..(((((((.......)))))))..)))))).)))))..)).))))).................................................. ..................................................51......................................................................123................................................	Size	Perfect hit	Total Norm	Perfect Norm	mjLiverKO2() Liver Data. (Zcchc11 liver)	SRR040489(GSM533912) E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)	SRR040488(GSM533911) E18.5 wild type LIVER small RNA. (liver)	SRR039610(GSM527274) small RNA-Seq. (brain)	SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes)	GSM416732(GSM416732) MEF. (cell line)	SRR391853(GSM852148) gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)	SRR345200(SRX097261) source: size fractionated RNA from mouse hipp. (brain)	SRR042463(GSM539855) mouse natural killer cells [09-002]. (spleen)	SRR345196(SRX097257) source: size fractionated RNA from mouse hipp. (brain)	SRR042472(GSM539864) mouse iTreg cells [09-002]. (lymph)	GSM509280(GSM509280) small RNA cloning by length. (testes)	mjTestesKO7() Testes Data. (Zcchc11 testes)	SRR042480(GSM539872) mouse kidney tissue [09-002]. (kidney)	SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes)	GSM314557(GSM314557) ESC dgcr8 (Illumina). (ESC)	SRR038744(GSM527279) small RNA-Seq. (brain)	SRR042446(GSM539838) mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)	SRR042445(GSM539837) mouse immature B cells [09-002]. (b cell)	SRR345202(SRX097263) source: size fractionated RNA from mouse hipp. (brain)	SRR116846(GSM678422) Small RNA deep sequencing from mouse epididym. (blood)	SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes)	mjTestesKO5() Testes Data. (Zcchc11 testes)	SRR345199(SRX097260) source: size fractionated RNA from mouse hipp. (brain)	mjTestesKO6() Testes Data. (Zcchc11 testes)	SRR039152(GSM471929) HL1_siNon_smallRNAseq. (muscle)	SRR391850(GSM852145) gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)	GSM640581(GSM640581) small RNA in the liver with paternal control. (liver)	mjTestesWT3() Testes Data. (testes)	SRR042447(GSM539839) mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)	SRR039153(GSM471930) HL1_siSrf1_smallRNAseq. (muscle)	SRR042475(GSM539867) mouse embryonic fibroblast cells [09-002]. (fibroblast)	GSM640582(GSM640582) small RNA in the liver with paternal control . (liver)	SRR042454(GSM539846) mouse germinal center B cells (lymph node) [09-002]. (b cell)	SRR037935(GSM510473) 293cand3. (cell line)	SRR037924(GSM510462) e9p5_rep2. (embryo)	SRR345204(SRX097265) source: size fractionated RNA from mouse hipp. (brain)	Ago1IP517(Rui) Quantitative functions of Argonaute proteins . (ago1 skin)	SRR402762(SRX117945) source: ES E14 male cells. (ESC)	SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)	SRR345207(SRX097268) source: size fractionated RNA from mouse hipp. (brain)	SRR306534(GSM750577) 19-24nt. (ago2 brain)	Ago3IP812(Rui) Quantitative functions of Argonaute proteins . (ago3 skin)	SRR042487(GSM539879) mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)	SRR037944(GSM510482) 293DcrTN_cand5. (cell line)	SRR206942(GSM723283) other. (brain)	SRR391848(GSM852143) gender: femalegenotype/variation: wild typeti. (embryo)	SRR279906(GSM689056) cell type: mouse embryonic stem cellcell line. (ESC)	mjTestesWT2() Testes Data. (testes)
........................................................................................................................GGCGGCGGCGGAGGCTCCTCTGCAG............................	25	1	2.00	2.00	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................AGGCTCCTCTGCAGCTCCGGC.....................	21	1	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................GGCGGCGGAGGCTCCTCTG...............................	19	1	2.00	2.00	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................agcCGAGCCCCAGCCCCA.............................................................................................................................	18	agc	1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................GGCTCCTCTGCAGCTCCGGCT....................	21	1	1.00	1.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................CGGAGGCTCCTCTGCAGCTC.........................	20	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................CCTCTGCAGCTCCGGCTC...................	18	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................GCTCCTCTGCAGCTCCG.......................	17	2	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................ccaCGAGCCCCAGCCCCA.............................................................................................................................	18	cca	1.00	0.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................cagaGAGCCCCAGCCCCAGC...........................................................................................................................	20	caga	1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................CTCCGGCTCCCCCTGGCCTCCC......	22	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................GGAGGCTCCTCTGCAGCTCCGGC.....................	23	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................GCGGCGGAGGCTCCTCTG...............................	18	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................GAGGCTCCTCTGCAGCTCCG.......................	20	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................TCCTCTGCAGCTCCGGCTCC..................	20	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................TCCTCTGCAGCTCCGGCTCCCCCTGGCCTC........	30	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................AGGCTCCTCTGCAGCTCCGGCT....................	22	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................CCGCCGCGAGCCCCAGCCCC..............................................................................................................................	20	1	1.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................GGAGGCTCCTCTGCAGCTCCG.......................	21	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................cgtaCTGCAGCTCCGGCTCC..................	20	cgta	0.50	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................TCCTCTGCAGCTCCGGC.....................	17	2	0.50	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................acaTCCTCTGCAGCTCCG.......................	18	aca	0.50	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................aagaGGCGGCGGCGGCGGAG................................................................	20	aaga	0.50	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-	-	-	-	-	-	-	-	-	-
....................................GCCCCAGCCCCAGCGCCA.......................................................................................................................	18	4	0.50	0.50	-	0.25	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	-
............................................................................................................................................acCAGCTCCGGCTCCCC................	17	ac	0.50	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-	-	-	-	-	-	-
...................................AGCCCCAGCCCCAGCGCCA.......................................................................................................................	19	4	0.25	0.25	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25