ID: mmu-mir-344b
chr7:68935355-68935517 -
Display Libraries
(21)
AGO2.ip
(54)
BRAIN
(4)
CELL-LINE
(2)
DCR.mut
(2)
DGCR8.mut
(12)
EMBRYO
(12)
ESC
(11)
FIBROBLAST
(1)
LIVER
(1)
LYMPH
(1)
OTHER
(7)
OTHER.mut
(2)
OVARY
(3)
PIWI.ip
(1)
PIWI.mut
(17)
TESTES
(8)
TOTAL-RNA
(1)
UTERUS
Showing top 132 reads
AGAATCAGAAGCAACTAGAGAAAATAAAATTCTCTGCAGCCAGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTCCAGACAAGGATGGTTGCTTCTGAAACCAGGAGATAGAGGCAACA
......................................................((((((((((..((((((((...((((.....))))..)))))))).))))))))))......................................................
..................................................51..............................................................115................................................
SizePerfect hitTotal NormPerfect NormSRR206940(GSM723281)
other. (brain)
SRR206942(GSM723283)
other. (brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR206941(GSM723282)
other. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR206939(GSM723280)
other. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR037904(GSM510440)
brain_rep1. (brain)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR306526(GSM750569)
19-24nt. (ago2 brain)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR060845(GSM561991)
total RNA. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
GSM566419(GSM566419)
Endougenous small RNA from mouse NIH3T3 cells, without MHV-68 infection. (fibroblast)
mjTestesWT2()
Testes Data. (testes)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
GSM566420(GSM566420)
Endougenous small RNA from mouse NIH3T3 cell, infected with MHV-68. (fibroblast)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
GSM416732(GSM416732)
MEF. (cell line)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)
GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)
SRR037897(GSM510433)
ovary_rep2. (ovary)
SRR037919(GSM510457)
e12p5_rep1. (embryo)
........................................................................................CATTTAGCCAAAGCCTGACTGT.....................................................22115205.0015205.001225.001205.001269.001103.00823.00776.00684.00591.00-191.00450.00408.00425.00413.00413.00280.00382.00343.00219.00330.00312.00180.00286.00269.00223.00211.00167.00104.00105.00132.00156.00108.00102.00103.0090.0088.0098.0097.0063.0061.0055.0074.0054.0058.0053.0044.0038.0042.0024.0023.0021.0025.0023.0018.0023.0016.0015.0011.0012.0012.005.004.004.003.007.005.006.004.004.005.00-4.003.00-4.001.001.002.00-3.002.001.002.00-1.00---1.00----1.00------1.001.001.001.00-----1.00-1.00------------
........................................................................................CATTTAGCCAAAGCCTGACTGTt....................................................23T1488.0015205.0057.0042.0061.0041.0063.0031.0028.009.00587.0084.0014.0031.006.0018.0018.0023.0030.0021.0037.0018.0019.0059.0023.0023.0014.0010.009.0012.0018.008.005.0010.006.003.004.00-1.00-6.00--2.005.006.00-4.003.00-4.002.00-1.001.001.00-1.00-1.001.00--2.00---1.00---------2.00-----------1.00------1.00-----------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTA....................................................2311413.001413.00191.0072.0018.0077.0014.0063.0091.005.00-180.006.006.001.004.004.0042.007.0031.00139.006.005.0079.008.009.0019.0019.001.0047.0037.0017.007.0016.0031.0014.008.007.001.001.0016.0025.0020.003.005.001.00--2.00-4.007.003.003.003.003.002.00--3.00--5.003.00-6.001.003.00-1.00--1.00----1.00-1.001.00--1.00--1.002.001.00-----------1.00---------1.00---------------
.........................................................................................ATTTAGCCAAAGCCTGACTGT.....................................................211190.00190.004.0022.0011.0014.004.0019.002.006.00--6.006.008.009.001.006.004.005.0010.006.007.005.009.004.002.002.00---3.001.002.00--5.00-1.00----2.00-1.00-2.00--1.00---------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGT.....................................................183170.33170.3311.0013.000.3314.670.338.337.671.33--0.332.000.671.330.6725.672.674.00-1.001.33-3.670.67-1.33--0.672.332.006.00-7.002.67-1.00-2.33-0.670.67-1.00-0.334.67---2.33-1.003.330.330.671.67-0.671.00-1.33---0.33-0.33-0.333.000.671.003.000.33-3.001.001.670.330.33-0.67-0.33-1.331.00---1.330.670.330.331.00-----------------0.330.67--0.33--0.33-0.330.33
........................................................................................CATTTAGCCAAAGCCTGACTG......................................................211148.00148.0012.0010.0011.0010.006.0014.009.004.00-4.001.003.003.002.003.009.002.007.00---1.002.00-4.003.003.001.001.003.001.002.001.001.002.001.002.001.00-1.00-----1.002.00--1.00----1.001.00-1.00-----------1.00------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGc.....................................................22C139.00148.008.0018.009.0015.004.002.006.004.00---2.002.00-2.0016.001.003.004.003.001.00-1.00-2.001.00-2.005.001.00-4.00-3.002.004.00----2.00-2.00-4.00--1.001.00--3.00---1.00--------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGa.....................................................22A111.00148.0020.0011.007.0012.002.001.009.005.00----2.002.001.008.001.002.001.001.003.00-1.002.001.00-2.001.001.003.00--3.00-1.00-------2.00--1.00-1.00-1.00----------------2.00---------------------------------------1.00-----------------
........................................................................................CATTTAGCCAAAGCCTGACTGTAA...................................................24177.0077.001.001.004.00-6.001.001.001.00-11.006.001.001.001.003.001.003.003.00-1.001.006.00-3.002.002.001.001.005.001.00---1.00-----1.00--1.001.00-----2.00-----------------2.00--1.00-----------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTAt...................................................24T75.001413.001.004.002.002.001.009.003.00--8.00--1.001.00-2.001.001.003.001.002.007.001.002.004.001.001.00--1.001.00---1.00--1.004.00--1.00-------1.004.00-------1.00-------------------------------2.00---------------------------------
........................................................................................CATTTAGCCAAAGCCTGACT.......................................................20162.0062.005.002.003.006.003.003.003.001.00---1.00---8.001.003.00--2.008.001.00-1.00------5.00----1.00--------1.00----------------3.00-------------------------------------------------1.00-----------
.........................................................................................ATTTAGCCAAAGCCTGACTGTA....................................................22151.0051.003.001.00-1.001.00----21.00-----1.00-----10.00----------1.00--3.00---1.005.00--1.00----2.00---------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGg.....................................................22G31.00148.001.004.00-5.008.00-------1.00-------2.00---------1.00----1.001.00--1.002.00-2.00-1.00------------------1.00------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTtt...................................................24TT26.0015205.00--3.001.002.002.001.00----1.001.00----2.00--1.004.00--1.00-1.00------1.00------3.00---------1.00-------1.00-----------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGA.........................................................18125.0025.00-1.003.00-1.001.00---3.001.001.00-1.00-1.001.00--1.001.00-1.002.00-----------1.00--3.001.00-1.00----------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTtt.....................................................22TT23.0062.001.002.00---1.003.00-----1.00----1.00---2.00--1.001.00-8.00---1.00------------1.00-------------------------------------------------------------------------------
.......................................................................................GCATTTAGCCAAAGCCTGACTGT.....................................................23123.0023.003.001.001.00-2.004.00-1.00--1.00-1.00--1.00-2.00----1.00------1.00-1.00--1.00--------1.00----------------1.00---------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGAatgt.....................................................22ATGT20.0025.00-----2.00-1.00--2.00-4.00---1.00-2.002.002.001.00-1.00---1.00-----1.00------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACcgt.....................................................22CGT17.0012.00--1.00-1.00--1.00----1.001.002.002.00---1.00--1.00---1.00-1.001.001.00------1.00------1.00-------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTc....................................................23C16.0015205.001.00-3.001.002.00--------1.00--------2.00-----1.00-1.00-2.00------2.00------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTGTt....................................................22T15.00190.001.001.001.00--1.00-1.00---3.001.00---1.002.00------1.00------1.00--------------------------1.00-----------------------------------------------------------------
...........................................................................................TTAGCCAAAGCCTGACTGT.....................................................19115.0015.00----1.00----------2.002.00-----2.00--------2.00-1.00---1.00-----------------------------------2.00----1.00-------------1.00-------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTg....................................................23G14.0015205.0010.00--1.00--------------------1.00----------1.00------1.00---------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTGTAA...................................................23113.0013.00---------11.00-----1.00-----------------------------------------1.00------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGAC........................................................19112.0012.00-----1.00----1.001.00--2.001.001.00-----------1.00---2.00-----2.00-------------------------------------------------------------------------------------
..........................................................................................TTTAGCCAAAGCCTGACTGT.....................................................20112.0012.00---1.00--------1.002.00-4.00---------------1.00---------------------1.00--------1.00-----------------1.00-------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTct.....................................................22CT11.0062.00--1.003.00-----------1.00----3.00------1.00----------------2.00-------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTAg...................................................24G9.001413.003.002.00-----------1.00---------------1.00----1.00----------1.00------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGAttgt.....................................................22TTGT8.0025.00-----2.00-----1.00-----2.00-------1.00--------------1.00------1.00----------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTat.....................................................22AT7.0062.00----1.00--2.00----2.00---1.00--------------------1.00--------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACggt.....................................................22GGT6.0012.001.001.00-----------------1.00-------1.00----------------1.001.00------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCT...........................................................1626.006.00--1.00----1.00--0.500.50-1.000.50-------0.501.00----------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTG..........................................................1716.006.00----------1.00--1.00---1.00--3.00-------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTta...................................................24TA5.0015205.00----1.00-1.00----------------1.00-------1.00---------1.00----------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGAgtgt.....................................................22GTGT5.0025.00--1.00--2.00-------1.00-1.00------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGca....................................................23CA5.00148.00---2.001.00----1.00-1.00----------------------------------------------------------------------------------------------------------------
.............................................................................................AGCCAAAGCCTGACTGT.....................................................1754.004.00-0.200.200.20-0.60-0.20---0.20-0.400.20--0.20----0.40--0.20-------------0.20-------------------0.20-----------0.40-----------------------------------------0.20----------
........................................................................................CATTTAGCCAAAGCCTGACTtta....................................................23TTA4.0062.00-----1.00---------------------1.00----------1.00-1.00-----------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACagt.....................................................22AGT4.0012.00-------1.00--1.00------------1.00--------------------------------1.00-------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTGc.....................................................21C4.003.00---1.00--1.00---1.00--------------------1.00--------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTG......................................................1733.673.670.670.330.33--0.331.00---------------------------0.330.67----------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTG......................................................2013.003.00--1.00--1.00---------------------------1.00------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGgt....................................................23GT3.00148.00-2.00---------1.00----------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTAAt..................................................25T3.0077.00---------------1.00--------1.001.00--------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGaa....................................................23AA3.00148.00-2.00----------------------------------------------1.00---------------------------------------------------------------------------
.......................................................................................................TGACTGTAAGCTGCTCCAGACAAGGATG................................2813.003.00------------------------------------------------------------------------------------------------1.001.00---------1.00----------------
..........................................................................................TTTAGCCAAAGCCTGACTGTt....................................................21T3.0012.00-----------------1.00-------------1.00---------------------1.00----------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGc.....................................................18C2.333.67-0.67----0.33--------1.00-----------------0.33------------------------------------------------------------------------------------------
.....................................................AGTCAGGCTCCTGGCTAAAGTTC.......................................................................................2312.002.00---------------2.00------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTt......................................................21T2.0062.00--------------------------------2.00-------------------------------------------------------------------------------------------
...........................................................................................TTAGCCAAAGCCTGACTGTtt...................................................21TT2.0015.00-------2.00--------------------------------------------------------------------------------------------------------------------
..........................................................................................TTTAGCCAAAGCCTGACTGTA....................................................2112.002.00---------------1.00------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................TTAGCCAAAGCCTGACTGTAt...................................................21T2.000.00------2.00---------------------------------------------------------------------------------------------------------------------
.................................................................................................................................TGGTTGCTTCTGAAACCAGGAGATAG........2612.002.00----------------------------------------------------------------2.00-----------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTtaa..................................................25TAA2.0015205.00-1.00-1.00------------------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACcgtt....................................................23CGTT2.0012.00-------1.00---------------1.00----------------------------------------------------------------------------------------------------
........................................................................................................................................TTCTGAAACCAGGAGATAGAGGCAAC.2612.002.00-----------------------------------------------------------------------------------------2.00----------------------------------
...........................................................................................TTAGCCAAAGCCTGACTG......................................................1812.002.00--------------------------------------------------------------2.00-------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGTA....................................................1932.002.00---------------0.67----------------------------------0.33--0.33-----------0.33-----------------------------------------------0.33----------
............................................................................................TAGCCAAAGCCTGACTGa.....................................................18A1.673.670.67--0.67--------0.33---------------------------------------------------------------------------------------------------------------
..............................................................................................GCCAAAGCCTGACTGT.....................................................1671.141.14--0.14----0.14----0.140.29----------0.14-------------------------------0.14------------------------------0.14------------------------------------
............................................................................................TAGCCAAAGCCTGACTGTAAGCTGCTCC...........................................2811.001.00---------------------------------------------------------------------------------1.00------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTataa...................................................24ATAA1.0062.00---------------------------------------1.00------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTcca..................................................25CCA1.0015205.00----------------1.00-----------------------------------------------------------------------------------------------------------
.....................................................AGTCAGGCTCCTGGCTAAAGTTCA......................................................................................2411.001.00-----------------------------1.00----------------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTat.....................................................21AT1.001.00-----------1.00----------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGtc........................................................19TC1.006.00----------------------------1.00-----------------------------------------------------------------------------------------------
..........................................................................................TTTAGCCAAAGCCTGAttgt.....................................................20TTGT1.000.00---------------1.00------------------------------------------------------------------------------------------------------------
.........................................................AGGCTCCTGGCTAAAGTTCAGC....................................................................................2211.001.00---------------------------------------------------------------------------------------------------1.00------------------------
........................................................................................CATTTAGCCAAAGCCTGACTata....................................................23ATA1.0062.00---------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTGTc....................................................22C1.00190.00------------------------------------------1.00---------------------------------------------------------------------------------
..........................................................................................TTTAGCCAAAGCCTGACTGc.....................................................20C1.000.00---------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTGTAt...................................................23T1.0051.00----1.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACTGTAAt..................................................24T1.0013.00-------------------------1.00--------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACa.......................................................20A1.0012.001.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................TGCATTTAGCCAAAGCCTGACTGTAAGC.................................................2811.001.00--------------------------------------------------------------------1.00-------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTct...................................................24CT1.0015205.00---1.00------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CTTCTGAAACCAGGAGATAGAGGCA...2511.001.00--------------------------------------------------------------------1.00-------------------------------------------------------
.....................................................................................CTGCATTTAGCCAAAGCCTGACgt......................................................24GT1.000.00--------------------------1.00-------------------------------------------------------------------------------------------------
................................................................TGGCTAAAGTTCAGCg...................................................................................16G1.000.00--------------------------------------------1.00-------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACcgta....................................................23CGTA1.0012.00------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGctgt......................................................21CTGT1.006.00----------------------------------------------------------------------------------------1.00-----------------------------------
..........................................................................................TTTAGCCAAAGCCTGACTGTg....................................................21G1.0012.00-----------------1.00----------------------------------------------------------------------------------------------------------
......................................................................................TGCATTTAGCCAAAGCCTGACTG......................................................2311.001.00---1.00------------------------------------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGTt....................................................19T1.00170.33---------------0.33-------0.33----------------------------------------------0.33-----------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGAatg......................................................21ATG1.0025.00---------------1.00------------------------------------------------------------------------------------------------------------
..................................................ATCAGTCAGGCTCCTGGCTA.............................................................................................2011.001.00----------------------1.00-----------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGag....................................................23AG1.00148.001.00---------------------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGct....................................................23CT1.00148.00--------------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGTAA...................................................2031.001.00----------0.33-------------0.33-------------------------0.33-------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGAttgt.....................................................21TTGT1.000.00---------------1.00------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGTgt...................................................24GT1.0015205.00-1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................GCATTTAGCCAAAGCCTGACTGTA....................................................2411.001.00------------------------1.00---------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTca.....................................................22CA1.0062.00-----------------------------1.00----------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTatt....................................................23ATT1.0062.00-------------------------------1.00--------------------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACT.......................................................1911.001.00--------------------1.00-------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACc.......................................................20C1.0012.00--------------------------------------------------------------------------------------------------------------1.00-------------
........................................................................................CATTTAGCCAAAGCCTGACagta....................................................23AGTA1.0012.00-----------------------1.00----------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTaa.....................................................22AA1.0062.00-------1.00--------------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACcgc.....................................................22CGC1.0012.00-------------------1.00--------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGAtat......................................................21TAT1.0025.00----1.00-----------------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGcaa...................................................24CAA1.00148.00----------------------------1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................TGAAACCAGGAGATAGAGGCAACA2411.001.00--------------------------------------------------------------------1.00-------------------------------------------------------
.........................................................AGGCTCCTGGCTAAAGTTC.......................................................................................1911.001.00---------------1.00------------------------------------------------------------------------------------------------------------
..................................TGCAGCCAGGATTTTgttc..............................................................................................................19GTTC1.000.00--------------------------------------------1.00-------------------------------------------------------------------------------
...........................................................................................TTAGCCAAAGCCTGACTGTAAt..................................................22T1.000.00--------------------------------------------------1.00-------------------------------------------------------------------------
.......................................................................................................TGACTGTAAGCTGCTCCAGACAAGGATGt...............................29T1.003.00---------------------------------------------------------------------------------------------------------1.00------------------
......................................................................................TGCATTTAGCCAAAGCCTGACTGTA....................................................2511.001.00------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTcta....................................................23CTA1.0062.001.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................................TTAGCCAAAGCCTGACTGTttt..................................................22TTT1.0015.00-----------------------1.00----------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTttt....................................................23TTT1.0062.00------------------------------------------1.00---------------------------------------------------------------------------------
.........................................................................................ATTTAGCCAAAGCCTGACagt.....................................................21AGT1.000.00------------1.00---------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACggta....................................................23GGTA1.0012.00---------------1.00------------------------------------------------------------------------------------------------------------
........................................................................................CATTTAGCCAAAGCCTGACTGat....................................................23AT1.00148.00-1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGg.....................................................18G0.673.67---------------------------------0.67------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTtt.....................................................18TT0.670.00------0.67---------------------------------------------------------------------------------------------------------------------
................................................................................................CAAAGCCTGACTGTAAG..................................................1730.670.67-------------------------------------------------------------------------------------------------------------------0.67--------
............................................................................................TAGCCAAAGCCTGACTGTcatt.................................................22CATT0.33170.33------------------------------------------0.33---------------------------------------------------------------------------------
.................................................................................................AAAGCCTGACTGTAAagaa...............................................19AGAA0.330.00------------------------------------------------------------------------------------0.33---------------------------------------
............................................................................................TAGCCAAAGCCTGACcgt.....................................................18CGT0.330.00-0.33--------------------------------------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGTAAGC.................................................2230.330.330.33---------------------------------------------------------------------------------------------------------------------------
............................................................................................TAGCCAAAGCCTGACTGTAAt..................................................21T0.331.00-------------------------------------------------------------------------------------------0.33--------------------------------
............................................................................................TAGCCAAAGCCTGACTGTttt..................................................21TTT0.33170.33---0.33------------------------------------------------------------------------------------------------------------------------
...............................................................................................CCAAAGCCTGACTGTAAG..................................................1830.330.33-------------------------------------------------------------------------------------0.33--------------------------------------
........................................................................................CATTTAGCCAAAGCC............................................................1590.110.11-------------0.11--------------------------------------------------------------------------------------------------------------
AGAATCAGAAGCAACTAGAGAAAATAAAATTCTCTGCAGCCAGGATTTTCATCAGTCAGGCTCCTGGCTAAAGTTCAGCTTTCAGCTGCATTTAGCCAAAGCCTGACTGTAAGCTGCTCCAGACAAGGATGGTTGCTTCTGAAACCAGGAGATAGAGGCAACA
......................................................((((((((((..((((((((...((((.....))))..)))))))).))))))))))......................................................
..................................................51..............................................................115................................................
SizePerfect hitTotal NormPerfect NormSRR206940(GSM723281)
other. (brain)
SRR206942(GSM723283)
other. (brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR206941(GSM723282)
other. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR206939(GSM723280)
other. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR037904(GSM510440)
brain_rep1. (brain)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR306526(GSM750569)
19-24nt. (ago2 brain)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR060845(GSM561991)
total RNA. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
GSM566419(GSM566419)
Endougenous small RNA from mouse NIH3T3 cells, without MHV-68 infection. (fibroblast)
mjTestesWT2()
Testes Data. (testes)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
GSM566420(GSM566420)
Endougenous small RNA from mouse NIH3T3 cell, infected with MHV-68. (fibroblast)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
GSM416732(GSM416732)
MEF. (cell line)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
GSM361407(GSM361407)
CGNP_P6_Ptc+-_Ink4c--_rep5. (brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)
GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)
SRR037897(GSM510433)
ovary_rep2. (ovary)
SRR037919(GSM510457)
e12p5_rep1. (embryo)
............................................................................................TAGCCAAAGCCTGACTGT..................................................... 1833.003.00-----------------------------------------------------------------------------------0.67--------------------1.00-----------0.33-0.330.33-0.33--
.......................................................................................tgATTTAGCCAAAGCCTGACTGT..................................................... 23tg1.000.00-----------------------------------------------------------------------------------1.00----------------------------------------
.........................................aaaATTTTCATCAGTCAG........................................................................................................ 18aaa1.000.00------------------------------------------------------------------------1.00---------------------------------------------------
..................................................ATCAGTCAGGCTCCTGGCTAAA........................................................................................... 2211.001.00--1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................caCAGACAAGGATGGTT............................. 17ca1.000.00------------------------------------------------------------------1.00---------------------------------------------------------
..................................................ATCAGTCAGGCTCCTGGCTAA............................................................................................ 2111.001.00-----------------------1.00----------------------------------------------------------------------------------------------------
........................................................................................atTTTAGCCAAAGCCTGACTGT..................................................... 22at1.000.00-----------------------------------------------------------------------------------1.00----------------------------------------
.................................................aATCAGTCAGGCTCCTGGCTAA............................................................................................ 22a1.001.00----------------1.00-----------------------------------------------------------------------------------------------------------