ID: mmu-mir-3101
chr7:27960975-27961162 -
Display Libraries
(2)
AGO1.ip
(20)
AGO2.ip
(8)
B-CELL
(40)
BRAIN
(2)
CELL-LINE
(2)
DGCR8.mut
(15)
EMBRYO
(6)
ESC
(6)
FIBROBLAST
(5)
LIVER
(4)
LYMPH
(10)
OTHER
(11)
OTHER.mut
(1)
OVARY
(1)
PIWI.ip
(3)
SKIN
(8)
SPLEEN
(18)
TESTES
(3)
THYMUS
(10)
TOTAL-RNA
(1)
UTERUS
Showing top 90 reads
GGACCCTGGAACTGCGGATGTGGTCATGGTGTGGGTCAGTGGGGCAGCAGGTGGGGTAGGTAGCAGGTACCATTGACTAAAGCTAGTACTATAGGCTTGCCTCTAGCTTTGGTGGATGGTCTTTGCTAAGTTCTCTGCCAACCCAGCAGTGAGAATTGGGGTACAGAAAAGGAGGAAGAGGTCTGCAG
............................................................(((((((.((((((.(((((((((((......(((....)))))))))))))).)))))).)))))))............................................................
............................................................61.................................................................128..........................................................
SizePerfect hitTotal NormPerfect NormSRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR073954(GSM629280)
total RNA. (blood)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
mjTestesWT4()
Testes Data. (testes)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR206940(GSM723281)
other. (brain)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
GSM475281(GSM475281)
total RNA. (testes)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR206941(GSM723282)
other. (brain)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
SRR037927(GSM510465)
e7p5_rep1. (embryo)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
GSM640583(GSM640583)
small RNA in the liver with paternal Low prot. (liver)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR206939(GSM723280)
other. (brain)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (testes)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR060845(GSM561991)
total RNA. (brain)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM361398(GSM361398)
CGNP_P6_p53--_Ink4c--_rep1. (brain)
SRR073955(GSM629281)
total RNA. (blood)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037908(GSM510445)
newborn_rep1. (total RNA)
GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)
SRR206942(GSM723283)
other. (brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
.................................................................GGTACCATTGACTAAAGCTAG......................................................................................................211457.00457.0044.0029.0023.0024.0019.0024.0018.0016.0017.0014.0016.0010.002.0017.009.0016.004.00-6.007.0010.00-7.007.004.006.00-8.007.006.006.004.005.002.004.00-3.00-1.004.00-3.003.00-1.001.00--3.00-3.003.002.00-4.00--2.00-3.00------1.002.001.00-1.001.002.002.00-------2.00-1.002.00-1.00---2.00-----1.00--------1.00---1.00--1.00-1.00-1.00-1.00-1.00---1.001.00--1.00--------1.00--
........................................................................................................AGCTTTGGTGGATGGTCTTTGt..............................................................22T35.006.00--1.00---1.00-------3.00-3.00--4.00---1.00-1.00----1.001.00--1.00---1.00----1.00--1.001.00-1.00---1.00------1.001.001.00-----1.001.00------2.00-1.00--------1.00-1.00-----1.00--------1.00-----------------------------------
.................................................................GGTACCATTGACTAAAGCT........................................................................................................19129.0029.001.00-1.00-2.00-1.00--3.00----------1.00-3.001.00-1.00-----1.00----1.00----1.00--2.001.00--1.00---2.00------------------1.00----------------1.00-------------------1.00------------1.00----1.00----1.00--------
........................................................................................................AGCTTTGGTGGATGGTCTTT................................................................20122.0022.00------------9.00----3.00---4.00----1.00----------1.00-----------1.00-----1.00-----------------------1.00--1.00---------------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTAGT.....................................................................................................22121.0021.002.001.00---------2.00----2.00-2.001.001.00-------1.00----1.00--1.00--1.00--1.00---------------------------1.00---------------------1.001.00-------------1.00-------1.00------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTTT................................................................21120.0020.00----1.00-------1.00----3.00---3.00----2.00--------1.00----------1.00--2.00---1.00----------1.00---------1.00----------1.00-1.00---1.00------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTA.......................................................................................................20116.0016.00-1.001.001.00--2.00--1.00-1.00-1.00----------------------1.00-----1.00-1.00------1.00-----1.00------------------------------1.00----------1.00------------------------------------1.00---
......................................................................................................CTAGCTTTGGTGGATGGTCTTT................................................................22113.0013.00-----------------2.001.00--1.00----1.00----------1.00----------------------1.00----------------------1.00-------------1.00-----1.00--1.00---------------------------1.001.00----
.................................................................GGTACCATTGACTAAAGCTAGa.....................................................................................................22A12.00457.001.00-1.00----1.00---1.00--1.00---------3.00-------1.00---------------------------------1.00--------------------------------------------------------------1.00---------1.00
...............................................CAGGTGGGGTAGGTAGCA...........................................................................................................................18112.0012.00-----------------------------------5.00-1.00---------1.00--------1.00------2.00-------------------------1.00--------------------------------1.00-----------------
................................................................AGGTACCATTGACTAAAGCTAG......................................................................................................2219.009.002.001.00------1.00--2.00-------------------------1.00---------------------------------------2.00--------------------------------------------------------------
....................................................................ACCATTGACTAAAGCTAG......................................................................................................1819.009.00----1.00--3.001.002.00-------------2.00--------------------------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGa..............................................................22A8.006.00-----------1.00--1.00---------1.00-------------1.00-----------------1.00-1.00---1.001.00----------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTTTG...............................................................2217.007.00----1.00------1.00----1.00---------------------2.00------------------------------1.00-------------------------------------------------1.00--------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTG...............................................................2116.006.00--------------1.00------2.00-------1.00----------------------------1.00--------------------------------------------------------------------------1.00------
.......................................................................................................TAGCTTTGGTGGATGGTCTTTGt..............................................................23T5.007.00--------------1.00-3.00-------------------------------------------------------------1.00-------------------------------------------------------------
...............................................................CAGGTACCATTGACTAAAGCT........................................................................................................2114.004.00------------1.00----------------------------------------------------3.00--------------------------------------------------------------------------
................................................................AGGTACCATTGACTAAAGCTA.......................................................................................................2114.004.00----------3.00---------------------------------------1.00-----------------------------------------------------------------------------------------
..............................................GCAGGTGGGGTAGGTAGCA...........................................................................................................................1914.004.00-------------------------------------------------------------1.00--1.00-----------------1.00----------------------------------------1.00----------------
.................................................................GGTACCATTGACTAAAGCTAGTA....................................................................................................2314.004.00------------------3.00-------------------------------------------------------------------------------1.00-----------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCT..................................................................1813.003.00------------1.00--------1.00----1.00-----------------------------------------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTAGc.....................................................................................................22C3.00457.00-------------------------------------------3.00------------------------------------------------------------------------------------------------
......................................................................................................................................................................AAAAGGAGGAAGAGGTCTGCAGgata26GATA3.000.00----------------------------------------3.00---------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTT.................................................................1913.003.00------------2.00---------------------------------1.00---------------------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTAt......................................................................................................21T3.0016.00----------------------1.00-2.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTT.................................................................2013.003.00--------1.00-----------------1.00--------------------------1.00--------------------------------------------------------------------------------------
..................................................................GTACCATTGACTAAAGCTAG......................................................................................................2013.003.00-1.00--1.00---------------------------------------------------------------------------------1.00-----------------------------------------------------
.............................................................................................................................CTAAGTTCTCTGCCAACC.............................................1812.002.00------------------2.00-------------------------------------------------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGC.........................................................................................................1812.002.00--------------1.00----1.00------------------------------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGtaa............................................................24TAA2.006.00-----------------1.00-------------------------------------------1.00------------------------------------------------------------------------------
....................................................................................................CTCTAGCTTTGGTGGATGGTCTag................................................................24AG2.000.00---------------------------------2.00----------------------------------------------------------------------------------------------------------
.............................................AGCAGGTGGGGTAGGTAGCA...........................................................................................................................2012.002.00-----------------------------------------------1.00----------------1.00---------------------------------------------------------------------------
...............................................................CAGGTACCATTGACTAAAGCTAGa.....................................................................................................24A2.000.00-1.00---------1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTTTGa..............................................................23A2.007.00-------1.00----------------------------------------------------1.00-------------------------------------------------------------------------------
....................TGGTCATGGTGTGGGTCAGTGGGGCAGCAGGTG.......................................................................................................................................3312.002.00----------------------------------------2.00---------------------------------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTC...................................................................1812.002.00------------1.00-------------1.00-----------------------------------------------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTTTaa..............................................................23AA2.0020.00----------------1.001.00--------------------------------------------------------------------------------------------------------------------------
................................................................AGGTACCATTGACTAAAGCTAGa.....................................................................................................23A2.009.00---------------------------------------------1.00--------------------------------------------------------------------------------------------1.00-
.......................................TGGGGCAGCAGGTGGtggg..................................................................................................................................19TGGG1.000.00------------------------------------------------------------------------------------------------------------------------------------1.00-------
........................................................................................................AGCTTTGGTGGATGGTCTTTtt..............................................................22TT1.0022.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------
...........................................................................................................TTTGGTGGATGGTCTTg................................................................17G1.000.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------
...................................................................TACCATTGACTAAAGCTA.......................................................................................................1811.001.00----------------------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................GGAGGAAGAGGTCTGCtac19TAC1.000.00---------------------------------------------------------------------------1.00----------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTattt................................................................20ATTT1.000.00-------------------------------------------------------1.00------------------------------------------------------------------------------------
..........................................................................................................CTTTGGTGGATGGTCTTTG...............................................................1911.001.00--------------------------------------------------------1.00-----------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGCT.............................................................2311.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTgg......................................................................................................21GG1.0029.00----------1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................TTTGGTGGATGGTCTTTGt..............................................................19T1.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................GGAGGAAGAGGTCTGtcct19TCCT1.000.00-----------------------------------------------------------------------------------------------------------------1.00--------------------------
.....................................................................CCATTGACTAAAGCTAG......................................................................................................1721.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------------------
...............................................CAGGTGGGGTAGGTAGCAGG.........................................................................................................................2011.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTcg......................................................................................................21CG1.0029.00------1.00-------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CTAGCTTTGGTGGATGGTCTTTt...............................................................23T1.0013.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................TGGGGCAGCAGGTGGaca...................................................................................................................................18ACA1.000.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------
......................................................................................................CTAGCTTTGGTGGATGGTCTTTat..............................................................24AT1.0013.00-------------------------------------------------------------------------------1.00------------------------------------------------------------
.......................................TGGGGCAGCAGGTGGcatc..................................................................................................................................19CATC1.000.00----------------------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................TTGGTGGATGGTCTTTGCTAAG..........................................................2211.001.00---------------------------------------------1.00----------------------------------------------------------------------------------------------
.......................................TGGGGCAGCAGGTGGtgtg..................................................................................................................................19TGTG1.000.00---------------------------------------------------------------------------1.00----------------------------------------------------------------
......TGGAACTGCGGATGTGGTCATGGT..............................................................................................................................................................2411.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTtaa.............................................................23TAA1.0022.00---------------------------------------------------------------------------------------------------------------1.00----------------------------
..................................................................................................................................................................ACAGAAAAGGAGGAAGttg.......19TTG1.000.00---------------------------------1.00----------------------------------------------------------------------------------------------------------
...........................................GCAGCAGGTGGGGTAGGTAGCA...........................................................................................................................2211.001.00-------------------------------------------1.00------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGaa.............................................................23AA1.006.00-------------------------------------------------------------------------------------------1.00------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTat..............................................................22AT1.0022.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTt...............................................................21T1.0022.00---------------------1.00----------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTTTGttt............................................................25TTT1.007.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................CTAGCTTTGGTGGATGGTCT..................................................................2011.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................GTTCTCTGCCAACCCccaa........................................19CCAA1.000.00--------------------------------------------------------------------------------------------------------------1.00-----------------------------
......................................................................................................CTAGCTTTGGTGGATGGTCTTa................................................................22A1.000.00-------------------------------------------------------------------------------------1.00------------------------------------------------------
.......................................TGGGGCAGCAGGTGGttta..................................................................................................................................19TTTA1.000.00---------------------------------------------------------------------------------------------------------------------1.00----------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGga.............................................................23GA1.006.00----------------------------------------------------------1.00---------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGCTAa......................................................................................................21A1.0016.00---------------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGttt............................................................24TTT1.006.00-------------------------------------------------------1.00------------------------------------------------------------------------------------
.................................................................GGTACCATTGACTAAAGgt........................................................................................................19GT1.000.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------
................................................................AGGTACCATTGACTAAAGCT........................................................................................................2011.001.00----------------------------------------------1.00---------------------------------------------------------------------------------------------
............................................CAGCAGGTGGGGTAGGTAGCA...........................................................................................................................2111.001.00-------------------------------------1.00------------------------------------------------------------------------------------------------------
.......................................TGGGGCAGCAGGTGGtaca..................................................................................................................................19TACA1.000.00----------------------------------------------------------------------------------------------1.00---------------------------------------------
...............................................................CAGGTACCATTGACTAAAGCTA.......................................................................................................2211.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------
.................................................GGTGGGGTAGGTAGCAGGT........................................................................................................................1911.001.00-----------------------------------------------------1.00--------------------------------------------------------------------------------------
...........................................................................................................TTTGGTGGATGGTCTTTGCTA............................................................2111.001.00------------------------------------------------------------------------------------------------------1.00-------------------------------------
........................................................................................................AGCTTTGGTGGATGGTCTTTGtttt...........................................................25TTTT1.006.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------
..............................................................GCAGGTACCATTGACcgga...........................................................................................................19CGGA1.000.00-----------------------------------------------------------------------------------------------------1.00--------------------------------------
......TGGAACTGCGGATGTGGTCATGGTGT............................................................................................................................................................2611.001.00-------------------------------------------------------------------------------------------------------------------------------1.00------------
.....CTGGAACTGCGGATGTGGTCATGGTG.............................................................................................................................................................2611.001.00----------------------------------------------------------------------------------------------------1.00---------------------------------------
.......................................TGGGGCAGCAGGTGGtgt...................................................................................................................................18TGT1.000.00----------------------------------------------------------------------------------------------------------------------------------1.00---------
........................................................................................................AGCTTTGGTGGATGGTCTTTGC..............................................................2211.001.00-----------------------------------------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................TAGCTTTGGTGGATGGTCTTTGat.............................................................24AT1.007.00-------------------------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................GCTTTGGTGGATGGTCTT.................................................................1811.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------
.........................................................................................................GCTTTGGTGGATGGTCTTT................................................................1911.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................TGGGTCAGTGGGGCAGggag.........................................................................................................................................20GGAG1.000.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------
.....................................................................CCATTGACTAAAGCTAGT.....................................................................................................1820.500.50--------0.50-----------------------------------------------------------------------------------------------------------------------------------
GGACCCTGGAACTGCGGATGTGGTCATGGTGTGGGTCAGTGGGGCAGCAGGTGGGGTAGGTAGCAGGTACCATTGACTAAAGCTAGTACTATAGGCTTGCCTCTAGCTTTGGTGGATGGTCTTTGCTAAGTTCTCTGCCAACCCAGCAGTGAGAATTGGGGTACAGAAAAGGAGGAAGAGGTCTGCAG
............................................................(((((((.((((((.(((((((((((......(((....)))))))))))))).)))))).)))))))............................................................
............................................................61.................................................................128..........................................................
SizePerfect hitTotal NormPerfect NormSRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR073954(GSM629280)
total RNA. (blood)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
mjTestesWT4()
Testes Data. (testes)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR206940(GSM723281)
other. (brain)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
GSM475281(GSM475281)
total RNA. (testes)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR206941(GSM723282)
other. (brain)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
SRR037927(GSM510465)
e7p5_rep1. (embryo)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
GSM640583(GSM640583)
small RNA in the liver with paternal Low prot. (liver)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR206939(GSM723280)
other. (brain)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (testes)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR060845(GSM561991)
total RNA. (brain)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM361398(GSM361398)
CGNP_P6_p53--_Ink4c--_rep1. (brain)
SRR073955(GSM629281)
total RNA. (blood)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037908(GSM510445)
newborn_rep1. (total RNA)
GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)
SRR206942(GSM723283)
other. (brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)