mmu-mir-3070b

Display Libraries
(18) AGO2.ip	(39) BRAIN	(2) CELL-LINE	(2) DCR.mut	(2) DGCR8.mut	(9) EMBRYO	(9) ESC	(8) FIBROBLAST	(7) LIVER	(1) OTHER	(9) OTHER.mut	(1) PIWI.ip	(2) PIWI.mut	(1) SPLEEN	(21) TESTES	(9) TOTAL-RNA

GGAATGGTTCCAGTGGGGGGCCACTGGAGCCTCCTTAGCAACAGGAGGAAGTGCTGAGTGAGGCTGAGCCCCTGACCTTGAACCTGGGATCCTCCCCATGATCTTCTGGTGCTATGGTCAGGGGTAGATTCCTTGTCATGAGGCCCCTTAGGACCCATAAGGGCACAGTGACCCCAGTGCAGGCTGGAG
........................................................((((((((((....(((.((((((........))))))..))).....)))))))))).........................................................
.............................................................62....................................................................132.......................................................

Size

Perfect hit

Total Norm

Perfect Norm

mjTestesKO6()
Testes Data. (Zcchc11 testes)

mjTestesKO8()
Testes Data. (Zcchc11 testes)

mjLiverKO2()
Liver Data. (Zcchc11 liver)

mjLiverKO3()
Liver Data. (Zcchc11 liver)

mjTestesKO5()
Testes Data. (Zcchc11 testes)

mjTestesWT4()
Testes Data. (testes)

mjTestesKO7()
Testes Data. (Zcchc11 testes)

mjTestesWT1()
Testes Data. (testes)

SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)

mjTestesWT3()
Testes Data. (testes)

SRR306535(GSM750578)
19-24nt. (ago2 brain)

SRR306541(GSM750584)
19-24nt. (ago2 brain)

SRR306531(GSM750574)
19-24nt. (ago2 brain)

SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)

SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)

mjLiverKO1()
Liver Data. (Zcchc11 liver)

SRR206940(GSM723281)
other. (brain)

SRR306542(GSM750585)
19-24nt. (ago2 brain)

SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)

mjTestesWT2()
Testes Data. (testes)

SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)

mjLiverWT2()
Liver Data. (liver)

SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)

SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)

SRR306536(GSM750579)
19-24nt. (ago2 brain)

SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)

SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)

SRR038744(GSM527279)
small RNA-Seq. (brain)

SRR206942(GSM723283)
other. (brain)

SRR306537(GSM750580)
19-24nt. (ago2 brain)

SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)

GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)

SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)

SRR306533(GSM750576)
19-24nt. (ago2 brain)

SRR306530(GSM750573)
19-24nt. (ago2 brain)

SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)

SRR206941(GSM723282)
other. (brain)

SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)

SRR402762(SRX117945)
source: ES E14 male cells. (ESC)

GSM510456(GSM510456)
newborn_rep12. (total RNA)

SRR037914(GSM510451)
newborn_rep7. (total RNA)

SRR306529(GSM750572)
19-24nt. (ago2 brain)

SRR206939(GSM723280)
other. (brain)

SRR402760(SRX117943)
source: ES E14 male cells. (ESC)

SRR039610(GSM527274)
small RNA-Seq. (brain)

SRR038741(GSM527276)
small RNA-Seq. (brain)

SRR402766(SRX117949)
source: ES PGK female cells. (ESC)

SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)

GSM510453(GSM510453)
newborn_rep9. (total RNA)

SRR038743(GSM527278)
small RNA-Seq. (dicer brain)

SRR402761(SRX117944)
source: ES E14 male cells. (ESC)

SRR059775(GSM562837)
MEF_Drosha. (MEF)

SRR037906(GSM510442)
brain_rep3. (brain)

SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)

SRR306543(GSM750586)
19-24nt. (ago2 brain)

SRR306540(GSM750583)
19-24nt. (ago2 brain)

SRR306544(GSM750587)
19-24nt. (ago2 brain)

SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)

GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)

SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)

SRR037912(GSM510449)
newborn_rep5. (total RNA)

GSM510454(GSM510454)
newborn_rep10. (total RNA)

GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)

GSM510452(GSM510452)
newborn_rep8. (total RNA)

SRR306527(GSM750570)
19-24nt. (ago2 brain)

GSM510450(GSM510450)
newborn_rep6. (total RNA)

SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)

SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)

SRR060845(GSM561991)
total RNA. (brain)

SRR014231(GSM319955)
16.5 dpc total. (testes)

SRR306534(GSM750577)
19-24nt. (ago2 brain)

SRR037925(GSM510463)
e9p5_rep3. (embryo)

GSM510444(GSM510444)
brain_rep5. (brain)

SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)

SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)

SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)

SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)

SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)

SRR038740(GSM527275)
small RNA-Seq. (dicer brain)

GSM509280(GSM509280)
small RNA cloning by length. (testes)

SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)

SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)

SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)

SRR037920(GSM510458)
e12p5_rep2. (embryo)

SRR306532(GSM750575)
19-24nt. (ago2 brain)

SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)

SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)

SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)

SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)

SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)

SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)

mjLiverWT3()
Liver Data. (liver)

GSM416732(GSM416732)
MEF. (cell line)

SRR037904(GSM510440)
brain_rep1. (brain)

SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)

GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)

GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)

SRR037911(GSM510448)
newborn_rep4. (total RNA)

SRR306538(GSM750581)
19-24nt. (ago2 brain)

SRR037905(GSM510441)
brain_rep2. (brain)

SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)

SRR037907(GSM510443)
brain_rep4. (brain)

GSM510455(GSM510455)
newborn_rep11. (total RNA)

SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)

SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)

SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)

..........................................................................................................TGGTGCTATGGTCAGGGGTAGA.............................................................

295.00

31.00

21.00

20.00

9.00

10.00

11.00

18.00

2.00

19.00

3.00

2.00

5.00

8.00

4.00

1.00

10.00

4.00

14.00

1.00

7.00

6.00

8.00

1.00

4.00

2.00

6.00

5.00

2.00

1.00

4.00

1.00

4.00

1.00

5.00

1.00

2.00

3.00

1.00

3.00

1.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAG..............................................................

259.00

9.00

14.00

8.00

20.00

4.00

20.00

17.00

2.00

16.00

15.00

10.00

7.00

6.00

4.00

8.00

13.00

1.00

10.00

2.00

7.00

3.00

4.00

1.00

3.00

6.00

4.00

3.00

2.00

1.00

5.00

6.00

2.00

4.00

1.00

3.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGt.............................................................

35.00

259.00

1.00

2.00

5.00

2.00

4.00

1.00

2.00

1.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAa............................................................

25.00

295.00

2.00

4.00

2.00

4.00

1.00

2.00

1.00

2.00

1.00

..................................................................AGCCCCTGACCTTGAACCTGG......................................................................................................

19.50

5.50

3.00

1.50

0.50

1.50

0.50

1.00

0.50

1.00

0.50

1.00

0.50

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAat...........................................................

13.00

295.00

1.00

6.00

2.00

1.00

..................................................................AGCCCCTGACCTTGAACCTGGGA....................................................................................................

12.50

0.50

1.50

0.50

1.00

1.50

0.50

1.00

0.50

1.00

0.50

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAT............................................................

11.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAaa...........................................................

11.00

295.00

1.00

2.00

1.00

2.00

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTAGA.............................................................

10.00

5.00

2.00

1.00

2.00

..................................................................AGCCCCTGACCTTGAACCTGGG.....................................................................................................

8.50

0.50

1.50

0.50

1.00

0.50

.................................................................GAGCCCCTGACCTTGAACCTGG......................................................................................................

8.00

1.00

0.50

1.50

1.00

0.50

.........................................................................................................CTGGTGCTATGGTCAGGGGTAG..............................................................

8.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAt..............................................................

7.00

6.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGATa...........................................................

7.00

11.00

1.00

4.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTA...............................................................

6.00

1.00

................................................................................................................TATGGTCAGGGGTAGATTCgg........................................................

6.00

0.00

6.00

..........................................................................................................TGGTGCTATGGTCAGGGGT................................................................

6.00

1.00

...........................................................................................................GGTGCTATGGTCAGGGGTAG..............................................................

6.00

2.00

1.00

2.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGATT...........................................................

4.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAa..............................................................

4.00

6.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGta............................................................

4.00

259.00

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTAGt.............................................................

4.00

8.00

1.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGgaga.............................................................

GAGA

3.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAtt.............................................................

3.00

6.00

2.00

1.00

........................................................................................................TCTGGTGCTATGGTCAGGGGTAGA.............................................................

3.00

1.00

2.00

........................................................................................................TCTGGTGCTATGGTCAGGGGTAG..............................................................

3.00

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTA...............................................................

2.00

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTAGAat...........................................................

2.00

10.00

2.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGtaa...........................................................

TAA

2.00

259.00

1.00

..................................................................AGCCCCTGACCTTGAACCTGGGAat..................................................................................................

2.00

12.50

1.00

0.50

..........................................................................................................TGGTGCTATGGTCAGGGGTAGtt............................................................

2.00

259.00

2.00

.............................................................................................................TGCTATGGTCAGGGGTAa..............................................................

2.00

0.00

2.00

.............................................................................................................TGCTATGGTCAGGGGTAGAa............................................................

2.00

0.00

2.00

.............................................................................TTGAACCTGGGATCCTCCCCATt.........................................................................................

2.00

0.00

2.00

..................................................................AGCCCCTGACCTTGAACCTG.......................................................................................................

1.50

..................................................................AGCCCCTGACCTTGAACCTGGGAa...................................................................................................

1.50

12.50

0.50

..........................................................................................................TGGTGCTATGGTCAGGGGgag..............................................................

GAG

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTgga.............................................................

GGA

1.00

0.00

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTAa..............................................................

1.00

2.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGtaga..........................................................

TAGA

1.00

259.00

1.00

...........................................................................................................GGTGCTATGGTCAGGGGTAGt.............................................................

1.00

6.00

1.00

.....................................................................................................TCTTCTGGTGCTATGGTCAGGGGTAGAT............................................................

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAag...........................................................

1.00

295.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAaat..........................................................

AAT

1.00

295.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGG.................................................................

1.00

........................................................................................................TCTGGTGCTATGGTCAGGGG.................................................................

1.00

.............................................................................................................TGCTATGGTCAGGGGTAGATTCC.........................................................

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAga...........................................................

1.00

295.00

1.00

..................................................................AGCCCCTGACCTTGAACCTGGta....................................................................................................

1.00

19.50

0.50

.........................................................................................................CTGGTGCTATGGTCAGGGGTAGAa............................................................

1.00

10.00

1.00

........................................................................................................TCTGGTGCTATGGTCAGGGGTA...............................................................

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGATTt..........................................................

1.00

4.00

1.00

........................................................................................................TCTGGTGCTATGGTCAGGGGTAa..............................................................

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGtta...........................................................

TTA

1.00

259.00

1.00

..............................................................................................................GCTATGGTCAGGGGTA...............................................................

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGgagt.............................................................

GAGT

1.00

..................................................................AGCCCCTGACCTTGAACCTGGa.....................................................................................................

1.00

19.50

0.50

..........................................................................................................TGGTGCTATGGTCAGGGGTAGAaaa..........................................................

AAA

1.00

295.00

1.00

...........................................................................................................GGTGCTATGGTCAGGGGTAGA.............................................................

1.00

..............................................................................TGAACCTGGGATCCTCCCCA...........................................................................................

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGttt...........................................................

TTT

1.00

259.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAGga............................................................

1.00

259.00

1.00

..............................................................................................................................................................AAGGGCACAGTGACCCCAGT...........

1.00

.........................................................................................................CTGGTGCTATGGTCAGGGGTAGtaa...........................................................

TAA

1.00

8.00

1.00

..........................................................................................................TGGTGCTATGGTCAGGGGTAagt............................................................

AGT

1.00

6.00

1.00

....................................................................CCCCTGACCTTGAACCTGGGA....................................................................................................

0.50

......................................................................................................................................GTCATGAGGCCCCTTAGGACCCAT...............................

0.50

..................................................................AGCCCCTGACCTTGAACCTGGGATCC.................................................................................................

0.50

.................................................................GAGCCCCTGACCTTGAACCTGGGATC..................................................................................................

0.50

..........................................................................................................TGGTGCTATGGTCAGGG..................................................................

0.50

0.25

..................................................................AGCCCCTGACCTTGAACCTGGGATCCT................................................................................................

0.50

.............................................AGGAAGTGCTGAGTGAGGCT............................................................................................................................

0.50

..................................................................AGCCCCTGACCTTGAACCTGGGc....................................................................................................

0.50

8.50

0.50

..................................................................AGCCCCTGACCTTGAACCTGGGAT...................................................................................................

0.50

.................................................................GAGCCCCTGACCTTGAACCTGGGA....................................................................................................

0.50

.................................................................GAGCCCCTGACCTTGAACCTGGG.....................................................................................................

0.50

.................................................................GAGCCCCTGACCTTGAACCTGt......................................................................................................

0.50

0.00

0.50

..................................................................AGCCCCTGACCTTGAACCTGGGt....................................................................................................

0.50

8.50

0.50

..................................................................AGCCCCTGACCTTGAACCTGGGAaag.................................................................................................

AAG

0.50

12.50

0.50

..................................................................AGCCCCTGACCTTGAACCTGGt.....................................................................................................

0.50

19.50

0.50

..................................................................AGCCCCTGACCTTGAACCT........................................................................................................

0.50

..........................................................................................................TGGTGCTATGGTCAGGGttag..............................................................

TTAG

0.25

0.50

0.25