ID: mmu-mir-2861
chr2:32568277-32568458 -
Display Libraries
(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(12)
BRAIN 		(5)
CELL-LINE 		(6)
EMBRYO 		(6)
ESC 		(1)
FIBROBLAST 		(4)
LIVER 		(3)
OTHER 		(5)
OTHER.mut 		(1)
PIWI.mut 		(2)
SKIN 		(3)
SPLEEN 		(11)
TESTES
Showing top 72 reads
AACAGCGCTGGCGGCGGCGGCGGAGGCGGGGGCAGTGGCGGCGGCGGAGGCTCCTCTGCAGCTCCGGCTCCCCCTGGCCTCCCGGGAACTACAAGTCCCAGGGGGCCTGGCGGCGGGCGGAGACCGGAAGAGGCGGGCTCGGCACCTCGAGGCCGGAAGTGGCCGTGGAGGCGGAAGTGGCG
..................................................((..(((((((((((((.(((((((.((((........)))).))))))).......))).)))).)))).))..))......................................................
.........................................................58..............................................................................138..........................................
SizePerfect hitTotal NormPerfect NormSRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT2()
Testes Data. (testes)		GSM416732(GSM416732)
MEF. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR037935(GSM510473)
293cand3. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR206942(GSM723283)
other. (brain)
..........................................................................................................................ACCGGAAGAGGCGGGCTCG.........................................1912.002.002.00--------------------------------------------------------
.............................................................................................................................GGAAGAGGCGGGCTCttct......................................19TTCT2.000.00----------1.00-----------1.00----------------------------------
..............................................................................................................................................................GTGGCCGTGGAGGCGGAAG.....1912.002.00-------2.00-------------------------------------------------
..............................................................TCCGGCTCCCCCTGGCCTCCCG..................................................................................................2211.001.00---------------------1.00-----------------------------------
..........................................................................................................................................................GGAAGTGGCCGTGGAGGCGGAAGTGt..26T1.000.00----------------1.00----------------------------------------
....................................................................................................................................................GAGGCCGGAAGTGGCCGTGGAGGCGGA.......2711.001.00---1.00-----------------------------------------------------
.............................................................................................................................GGAAGAGGCGGGCTCttcc......................................19TTCC1.000.00-----------------------------1.00---------------------------
..........................................................................................................................................................GGAAGTGGCCGTGGAGGCGGAA......2211.001.00-----------1.00---------------------------------------------
................................................................................................................GCGGGCGGAGACCGGAAGAGGC................................................2211.001.00---------------------------1.00-----------------------------
..............................................................................CTCCCGGGAACTACAAGTCCCAGGG...............................................................................2511.001.00-----------------------1.00---------------------------------
...........................................................................................CAAGTCCCAGGGGGCCTGGCGt.....................................................................22T1.000.00-------------------------1.00-------------------------------
....................................................................TCCCCCTGGCCTCCCGGGA...............................................................................................1911.001.00----------------------------------------1.00----------------
.........................................................................................TACAAGTCCCAGGGGGCCTGGCa......................................................................23A1.000.00------------------------1.00--------------------------------
.............................................................................................................................GGAAGAGGCGGGCTCttc.......................................18TTC1.000.00-----------------1.00---------------------------------------
.........................................................................................................................................................CGGAAGTGGCCGTGGAGGCGGAA......2311.001.00------------------1.00--------------------------------------
.................................................................................................................................................CTCGAGGCCGGAAGTGGCCGTG...............2211.001.00--------------------1.00------------------------------------
.............................................................................................................................GGAAGAGGCGGGCTCtact......................................19TACT1.000.00------------1.00--------------------------------------------
..........GCGGCGGCGGCGGAGGtggt........................................................................................................................................................20TGGT0.500.00---------------------------------------0.50-----------------
....................CGGAGGCGGGGGCAGagct...............................................................................................................................................19AGCT0.500.00--------------------------------------------0.50------------
.....................................GCGGCGGCGGAGGCTgaa...............................................................................................................................18GAA0.500.00------------------------------0.50--------------------------
..............CGGCGGCGGAGGCGGcctt.....................................................................................................................................................19CCTT0.500.00---------------------------------------0.50-----------------
......GCTGGCGGCGGCGGCGact.............................................................................................................................................................19ACT0.500.00------------------------------------------------------0.50--
......GCTGGCGGCGGCGGCGGctct...........................................................................................................................................................21CTCT0.500.00-------------------------------------------------0.50-------
........TGGCGGCGGCGGCGGgac............................................................................................................................................................18GAC0.500.00-------------------------------------------0.50-------------
........TGGCGGCGGCGGCGGAGa............................................................................................................................................................18A0.500.00----------0.50----------------------------------------------
......GCTGGCGGCGGCGGCGGccct...........................................................................................................................................................21CCCT0.500.00------------0.50--------------------------------------------
........................................................TGCAGCTCCGGCTCCCCCTGGCt.......................................................................................................23T0.500.00--------------------------------------------------------0.50
.............GCGGCGGCGGAGGCGttt.......................................................................................................................................................18TTT0.500.00-----------------------------------------------0.50---------
....................................GGCGGCGGCGGAGGCaaaa...............................................................................................................................19AAAA0.500.00---------------------------------------------------0.50-----
......GCTGGCGGCGGCGGCtact.............................................................................................................................................................19TACT0.500.00--0.50------------------------------------------------------
..........GCGGCGGCGGCGGAGGagcg........................................................................................................................................................20AGCG0.500.00------------------------------0.50--------------------------
...............................................AGGCTCCTCTGCAGCTCCGGCTCt...............................................................................................................24T0.500.000.50--------------------------------------------------------
...........CGGCGGCGGCGGAGGCtctt.......................................................................................................................................................20TCTT0.500.00---------------------------------------------0.50-----------
..........GCGGCGGCGGCGGAGGCGGGGGgggt..................................................................................................................................................26GGGT0.500.00------------------------------------0.50--------------------
.......CTGGCGGCGGCGGCGactc............................................................................................................................................................19ACTC0.500.00--0.50------------------------------------------------------
..............CGGCGGCGGAGGCGGGGGggt...................................................................................................................................................21GGT0.500.00------------------------------------------0.50--------------
........................................................TGCAGCTCCGGCTCCCCCTGGt........................................................................................................22T0.500.00--------------------------------------------------0.50------
..........GCGGCGGCGGCGGAGGCGGGGGaggt..................................................................................................................................................26AGGT0.500.00------------------------------------0.50--------------------
............GGCGGCGGCGGAGGCGGta.......................................................................................................................................................19TA0.500.00-----------------------------------------------------0.50---
....................CGGAGGCGGGGGCAGTcg................................................................................................................................................18CG0.500.00------------------------------------------------0.50--------
.............GCGGCGGCGGAGGCGGGattt....................................................................................................................................................21ATTT0.500.00---------0.50-----------------------------------------------
............GGCGGCGGCGGAGGCGGtaa......................................................................................................................................................20TAA0.500.00---------------0.50-----------------------------------------
...................................................................CTCCCCCTGGCCTCCtctt................................................................................................19TCTT0.500.00---------------0.50-----------------------------------------
.................CGGCGGAGGCGGGGGCcgc..................................................................................................................................................19CGC0.500.00-------------------------------------------------------0.50-
...................................................TCCTCTGCAGCTCCGtcgc................................................................................................................19TCGC0.500.00----------------------------------0.50----------------------
AACAGCGCTGGCGGCGGCGGCGGAGGCGGGGGCAGTGGCGGCGGCGGAGGCTCCTCTGCAGCTCCGGCTCCCCCTGGCCTCCCGGGAACTACAAGTCCCAGGGGGCCTGGCGGCGGGCGGAGACCGGAAGAGGCGGGCTCGGCACCTCGAGGCCGGAAGTGGCCGTGGAGGCGGAAGTGGCG
..................................................((..(((((((((((((.(((((((.((((........)))).))))))).......))).)))).)))).))..))......................................................
.........................................................58..............................................................................138..........................................
SizePerfect hitTotal NormPerfect NormSRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT2()
Testes Data. (testes)		GSM416732(GSM416732)
MEF. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (blood)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR037935(GSM510473)
293cand3. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR206942(GSM723283)
other. (brain)
....................................GGCGGCGGCGGAGGCTCCTCTGCAG......................................................................................................................... 2512.002.00----2.00----------------------------------------------------
........................................................................CCTGGCCTCCCGGGAACTACAA........................................................................................ 2212.002.00-----2.00---------------------------------------------------
...............................................AGGCTCCTCTGCAGCTCCGGC.................................................................................................................. 2112.002.00--------------1.00-------------1.00----------------------------
.......................................GGCGGCGGAGGCTCCTCTG............................................................................................................................ 1912.002.00------2.00--------------------------------------------------
................................................GGCTCCTCTGCAGCTCCGGCT................................................................................................................. 2111.001.001.00--------------------------------------------------------
............................................CGGAGGCTCCTCTGCAGCTC...................................................................................................................... 2011.001.00-1.00-------------------------------------------------------
..................................................................tCTCCCCCTGGCCTCCCGGGAACTAC.......................................................................................... 26t1.000.00---1.00-----------------------------------------------------
....................................................................................................................gacaAGACCGGAAGAGGCG............................................... 19gaca1.000.00-------------1.00-------------------------------------------
...........................................................................GGCCTCCCGGGAACTACAAGTCCCAG................................................................................. 2611.001.00--------------------------------------1.00------------------
....................................................CCTCTGCAGCTCCGGCTC................................................................................................................ 1811.001.00--------------------------1.00------------------------------
................................................................CGGCTCCCCCTGGCCTCCCGGGAACTACAAGTCCC................................................................................... 3511.001.00-------------------1.00-------------------------------------
.................................................GCTCCTCTGCAGCTCCG.................................................................................................................... 1721.001.00-------------------------------1.00-------------------------
........................................GCGGCGGAGGCTCCTCTG............................................................................................................................ 1811.001.00--1.00------------------------------------------------------
..............................................GAGGCTCCTCTGCAGCTCCG.................................................................................................................... 2011.001.00--------1.00------------------------------------------------
...................................................TCCTCTGCAGCTCCGGCTCC............................................................................................................... 2011.001.00--------1.00------------------------------------------------
...............................................AGGCTCCTCTGCAGCTCCGGCT................................................................................................................. 2211.001.00-1.00-------------------------------------------------------
.............................................GGAGGCTCCTCTGCAGCTCCG.................................................................................................................... 2111.001.00-------------------------------------1.00-------------------
...........................................................................................................gacCGGCGGGCGGAGACC......................................................... 18gac1.000.00---------1.00-----------------------------------------------
...........................................................................................................gccCGGCGGGCGGAGACC......................................................... 18gcc1.000.00---------------------------------1.00-----------------------
................................................................................................................GCGGGCGGAGACCGGAAGA................................................... 1911.001.00--------------------------------1.00------------------------
.............................................................CTCCGGCTCCCCCTGGCCTCCC................................................................................................... 2211.001.00--1.00------------------------------------------------------
.............................................GGAGGCTCCTCTGCAGCTCCGGC.................................................................................................................. 2311.001.00-1.00-------------------------------------------------------
...................................................TCCTCTGCAGCTCCGGCTCCCCCTGGCCTC..................................................................................................... 3011.001.00-----------------------------------1.00---------------------
................................................acaTCCTCTGCAGCTCCG.................................................................................................................... 18aca0.500.00----------------------------------------------0.50----------
.....aagaGGCGGCGGCGGCGGAG............................................................................................................................................................. 20aaga0.500.00-----------0.50---------------------------------------------
...................................................cgtaCTGCAGCTCCGGCTCC............................................................................................................... 20cgta0.500.00----------------------------------0.50----------------------
...................................................TCCTCTGCAGCTCCGGC.................................................................................................................. 1720.500.50-----------------------------------------0.50---------------
........................................................acCAGCTCCGGCTCCCC............................................................................................................. 17ac0.500.00----------------------------------------------------0.50----