ID: mmu-mir-2139
chr4:139523391-139523585 -
Display Libraries
(5)
BRAIN 		(2)
CELL-LINE 		(1)
DGCR8.mut 		(1)
EMBRYO 		(2)
ESC 		(1)
KIDNEY 		(9)
LIVER 		(1)
OTHER 		(4)
OTHER.mut 		(1)
OVARY 		(2)
PANCREAS 		(1)
PIWI.ip 		(1)
PIWI.mut 		(1)
SPLEEN 		(10)
TESTES 		(1)
THYMUS
Showing top 49 reads
AATCGGATTCTTGGCATTCCTCTGTCCCTGGCCAGCATGCTCCCCACTGGAGAAGGAGCAGAGGGCCAGGACTGGCATTTGGACATGCAGCTGCCCAGCAAGGTGGTGCTGTCCGCAGCTGCGCTGCTCCTGGTAACTGCGGCTTACAAACTCTACAAGTCCAGACCTGCCCCAGTCGGGCAGGCAGGGAGAAAC
......................................................((((..((((....)))).)))).(((.(((.(((((......)))))))))))..................................................
......................................................55.......................................................112.................................................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		mjTestesWT3()
Testes Data. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR206942(GSM723283)
other. (brain)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		mjLiverWT1()
Liver Data. (liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206941(GSM723282)
other. (brain)
............................................................GAGGGCCAGGACTGGCATTTGGACATGCA..........................................................................................................29111.0011.0011.00-----------------------------------
..............................................................GGGCCAGGACTGGCATTTGGACATGCAG.........................................................................................................2818.008.008.00-----------------------------------
.............................................................AGGGCCAGGACTGGCATTTGGACATGCAGC........................................................................................................3014.004.00---4.00--------------------------------
.........................................................................................GCTGCCCAGCAAGGTGGTG.......................................................................................1913.003.00----------1.00----------1.00-1.00------------
..........................................CCCACTGGAGAAGGAGCA.......................................................................................................................................1813.003.00--2.00-1.00-------------------------------
............................................................................ATTTGGACATGCAGCTG......................................................................................................1713.003.00-3.00----------------------------------
..........................................................................................CTGCCCAGCAAGGTGGTG.......................................................................................1812.002.00-----1.00--------1.00---------------------
............................................................................ATTTGGACATGCAGCT.......................................................................................................1612.002.00-2.00----------------------------------
.............................................................AGGGCCAGGACTGGCATT....................................................................................................................1821.501.50----0.50---------0.50----------------0.50----
...........................................................AGAGGGCCAGGACTGGCATTTGG.................................................................................................................2311.001.00----------------------------1.00-------
.............................................................................TTTGGACATGCAGCTGC.....................................................................................................1721.001.00---------1.00--------------------------
..................................................................................................CAAGGTGGTGCTGTCCG................................................................................1711.001.00-----1.00------------------------------
................................................................................................AGCAAGGTGGTGCTGTCCGCAGat...........................................................................24AT1.000.00-----------------1.00------------------
................................................................................................................................................................................CGGGCAGGCAGGGAGtaa.18TAA1.000.00--------------------1.00---------------
.............................................................AGGGCCAGGACTGGCATTTGGACATGC...........................................................................................................2711.001.00---------1.00--------------------------
...........................................................AGAGGGCCAGGACTGGCATTTG..................................................................................................................2211.001.00---------------1.00--------------------
................................................................GCCAGGACTGGCATTTGGACATGCAGCT.......................................................................................................2811.001.00---------------------------1.00--------
..............................................................................TTGGACATGCAGCTGCCCAGCAAGGTGG.........................................................................................2811.001.00----1.00-------------------------------
...............................................................GGCCAGGACTGGCATaact.................................................................................................................19AACT1.000.00------------1.00-----------------------
..............................................CTGGAGAAGGAGCAGgtga..................................................................................................................................19GTGA1.000.00--------------------------1.00---------
......................................................................................GCAGCTGCCCAGCAAGGT...........................................................................................1821.001.00---------------------------------0.500.50-
......................................GCTCCCCACTGGAGAAcca..........................................................................................................................................19CCA1.000.00-------------1.00----------------------
.......................................................................................................................................................TCTACAAGTCCAGACgatc.........................19GATC1.000.00-------------------------1.00----------
.................................................................................................GCAAGGTGGTGCTGTCCG................................................................................1811.001.00------1.00-----------------------------
...........................................................AGAGGGCCAGGACTGGCATTTGGACATGC...........................................................................................................2911.001.00-----------------------------1.00------
............................................................................ATTTGGACATGCAGCTGCCCAGCAAGGcg..........................................................................................29CG1.000.00------------------------------1.00-----
...........................................................AGAGGGCCAGGACTGGCATTTGGAg...............................................................................................................25G1.000.00-----------1.00------------------------
.........................................................GCAGAGGGCCAGGACTGGCATT....................................................................................................................2211.001.00-----1.00------------------------------
...............................................................GGCCAGGACTGGCATTaca.................................................................................................................19ACA1.000.00------------1.00-----------------------
.....................................................AGGAGCAGAGGGCCAccag...........................................................................................................................19CCAG1.000.00--1.00---------------------------------
......................................................................ACTGGCATTTGGACATGCAGC........................................................................................................2111.001.00----------1.00-------------------------
........................................................AGCAGAGGGCCAGGAggga........................................................................................................................19GGGA1.000.00-----------1.00------------------------
............................................................................ATTTGGACATGCAGCTGCCCA..................................................................................................2111.001.00------------------1.00-----------------
..............................................................GGGCCAGGACTGGCATTTGGA................................................................................................................2111.001.00-------------------1.00----------------
......................................................................ACTGGCATTTGGACATGC...........................................................................................................1811.001.00------------------------1.00-----------
............................................................................ATTTGGACATGCAGC........................................................................................................1540.750.75--------------------------------0.75---
.................................................................CCAGGACTGGCATTTGGA................................................................................................................1820.500.50--0.50---------------------------------
.............................................................................TTTGGACATGCAGCTGCCC...................................................................................................1920.500.50-----------------------------------0.50
.........................................................GCAGAGGGCCAGGACTGG........................................................................................................................1830.330.33-------------------------------0.33----
AATCGGATTCTTGGCATTCCTCTGTCCCTGGCCAGCATGCTCCCCACTGGAGAAGGAGCAGAGGGCCAGGACTGGCATTTGGACATGCAGCTGCCCAGCAAGGTGGTGCTGTCCGCAGCTGCGCTGCTCCTGGTAACTGCGGCTTACAAACTCTACAAGTCCAGACCTGCCCCAGTCGGGCAGGCAGGGAGAAAC
......................................................((((..((((....)))).)))).(((.(((.(((((......)))))))))))..................................................
......................................................55.......................................................112.................................................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		mjTestesWT3()
Testes Data. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR037897(GSM510433)
ovary_rep2. (ovary)		SRR206942(GSM723283)
other. (brain)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		mjLiverWT1()
Liver Data. (liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206941(GSM723282)
other. (brain)
..........................................................................................................................GCTGCTCCTGGTAACTGCGGCTTACA............................................... 2612.002.00------2.00-----------------------------
.........................................................................................................................................TGCGGCTTACAAACTCTACAAGTCCA................................ 2612.002.00-------1.001.00---------------------------
...........................................................................................................GCTGTCCGCAGCTGCGCTGCTCCTGGTA............................................................ 2811.001.00----------------------1.00-------------
...................................................................................................................................GGTAACTGCGGCTTACAAACTCTACAA..................................... 2711.001.00-------1.00----------------------------
................................................................................................AGCAAGGTGGTGCTGTCCGCAG............................................................................. 2211.001.00----1.00-------------------------------
.....................................................................................................................................................ACTCTACAAGTCCAGACCTGCCCCA..................... 2511.001.00-------1.00----------------------------
................TTCCTCTGTCCCTGGCCAGCATGCTCC........................................................................................................................................................ 2711.001.00----------------1.00-------------------
........................................................................................................................................CTGCGGCTTACAAACTCTACAAGTCCA................................ 2711.001.00--------1.00---------------------------
............................................................tgtGGCCAGGACTGGCATT.................................................................................................................... 19tgt1.000.00-------------1.00----------------------
..................................................................................................................................................ccAACTCTACAAGTCCA................................ 17cc1.000.00--1.00---------------------------------
.......................................................................................................................................ACTGCGGCTTACAAACTCTACAAGTCCA................................ 2811.001.00--------1.00---------------------------