ID: mmu-mir-1905
chr3:88340173-88340354 -
Display Libraries
(2)
BRAIN 		(1)
CELL-LINE 		(6)
EMBRYO 		(4)
ESC 		(1)
LYMPH 		(4)
OTHER.mut 		(1)
OVARY 		(6)
PIWI.ip 		(3)
PIWI.mut 		(1)
SPLEEN 		(26)
TESTES
Showing top 90 reads
CGGTTATCTCAAACACGGGGTCGCGGTCCCGGCTGGGAGTGATGATGTACGTGTTGGTCTGCTGCTGGATGCGTTTGATGGTCGCTCCCTTGGGGCCCACCACCAGTCCCACCACGCGGTAGGGTACTCGTACACGGATGGTCACTTGGCCTGGCAGAGCAGGGGCCACGCCAAAGGCGGCG
......................................................((.((((((((.(((.(((.........))))))..((((((.........))))))....)))))))).))........................................................
..................................................51...............................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesWT2()
Testes Data. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		mjTestesWT3()
Testes Data. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (testes)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037937(GSM510475)
293cand2. (cell line)
...........................................................TGCTGCTGGATGCGTTTGATGGTCG..................................................................................................2512.002.00--1.001.00--------------------------------------
..........................................TGATGTACGTGTTGGTCTGCTGCTG...................................................................................................................2512.002.00--------------1.00-------------1.00-------------
.......................................................................................................................TAGGGTACTCGTACACGGA............................................1912.002.00--2.00---------------------------------------
..................................................................................................................................TACACGGATGGTCACTTGGCCTGGCA..........................2611.001.00-------1.00----------------------------------
......................................................TGGTCTGCTGCTGGATGCGTTTGATGGT....................................................................................................2811.001.00-1.00----------------------------------------
.............................................TGTACGTGTTGGTCTGCTGCTGGATG...............................................................................................................2611.001.00--------------1.00---------------------------
..................................................................................................................................TACACGGATGGTCACTTGGCCTGGC...........................2511.001.00---1.00--------------------------------------
...............................................................................................................................TCGTACACGGATGGTCACTTGGCCTGGCA..........................2911.001.00-------------------------------------1.00----
..............................................................TGCTGGATGCGTTTGATGGTCGCTCC..............................................................................................2611.001.00--1.00---------------------------------------
....................................................................................................................CGGTAGGGTACTCGTt..................................................16T1.000.00------------------------------1.00-----------
................................................................CTGGATGCGTTTGATGGT....................................................................................................1811.001.00-----------1.00------------------------------
.................................................................................................................ACGCGGTAGGGTACTCGTACACGGAT...........................................2611.001.00-1.00----------------------------------------
..............ACGGGGTCGCGGTCCCGGCaaa..................................................................................................................................................22AAA1.000.00-----------------1.00------------------------
...................................................................................................................GCGGTAGGGTACTCGaga.................................................18AGA1.000.00-----------------------------1.00------------
..........................................TGATGTACGTGTTGGTCTGCTGC.....................................................................................................................2311.001.00--1.00---------------------------------------
..............................................................TGCTGGATGCGTTTGATGGTCGCccc..............................................................................................26CCC1.000.00--------------------1.00---------------------
......................................................................................................................................CGGATGGTCACTTGGCCTGGCAGAGC......................2611.001.00---1.00--------------------------------------
...........................................................TGCTGCTGGATGCGTTTGATGGT....................................................................................................2311.001.00---1.00--------------------------------------
............................................................................................GGGCCCACCACCAGTCCtca......................................................................20TCA1.000.00-----------------------------------------1.00
...................................................................................................................................................GGCCTGGCAGAGCAGcgct................19CGCT1.000.00-----------1.00------------------------------
......................................................TGGTCTGCTGCTGGATGCGTTTGAT.......................................................................................................2511.001.00------------1.00-----------------------------
.............................................TGTACGTGTTGGTCTGCTGCTGGAT................................................................................................................2511.001.00---------------------------------1.00--------
...........................................................TGCTGCTGGATGCGTTTGATGGTCGC.................................................................................................2611.001.00---------------------------------------1.00--
...........................................................TGCTGCTGGATGCGTTTGATGGTC...................................................................................................2411.001.00--------1.00---------------------------------
.....................................AGTGATGATGTACGTGTTGGTCTG.........................................................................................................................2411.001.00----------------------------------1.00-------
..........................................................................................................................................TGGTCACTTGGCCTGGCAGAGCAGGGa.................27A1.000.00--1.00---------------------------------------
.......................................TGATGATGTACGTGTTGGTCTGCTGC.....................................................................................................................2611.001.00------------------------1.00-----------------
CGGTTATCTCAAACACGGGGTCGCGGTCCCGGCTGGGAGTGATGATGTACGTGTTGGTCTGCTGCTGGATGCGTTTGATGGTCGCTCCCTTGGGGCCCACCACCAGTCCCACCACGCGGTAGGGTACTCGTACACGGATGGTCACTTGGCCTGGCAGAGCAGGGGCCACGCCAAAGGCGGCG
......................................................((.((((((((.(((.(((.........))))))..((((((.........))))))....)))))))).))........................................................
..................................................51...............................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesWT2()
Testes Data. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		mjTestesWT3()
Testes Data. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (testes)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037937(GSM510475)
293cand2. (cell line)
........................................GATGATGTACGTGTTGGTCTGCTGCTGGA................................................................................................................. 29113.0013.005.004.00----3.00----------------1.00------------------
.........................................................................................................GTCCCACCACGCGGTAGGGT......................................................... 2017.007.00----4.00----1.00-----2.00--------------------------
..................................................GTGTTGGTCTGCTGCTGGATGCGTTTGA........................................................................................................ 2815.005.001.00--1.00--1.001.00------1.00---------------------------
................................................................................................CCACCACCAGTCCCACCACGCGGTA............................................................. 2515.005.003.001.00-1.00--------------------------------------
.....................................................................................................................GGTAGGGTACTCGTACACGGATGGTCA...................................... 2715.005.00-----5.00------------------------------------
......................................................................................................................................CGGATGGTCACTTGGCCTGGCAGAGCA..................... 2714.004.00-1.001.00-----1.00-1.00-------------------------------
....................................GAGTGATGATGTACGTGTTGGTCTGCT....................................................................................................................... 2713.003.002.001.00----------------------------------------
.................................................................................................CACCACCAGTCCCACCACGCGGTA............................................................. 2412.002.00-------1.00----------1.00-----------------------
..........................................TGATGTACGTGTTGGTCTGCTGCTGGA................................................................................................................. 2712.002.001.001.00----------------------------------------
..................................................................................................................................TACACGGATGGTCACTTGGCCTGGCA.......................... 2612.002.00--1.00-----1.00---------------------------------
................................................................................................................CACGCGGTAGGGTACTCGTACACGGA............................................ 2612.002.001.00-------1.00---------------------------------
.................................................CGTGTTGGTCTGCTGCTGGATGCGTTTGA........................................................................................................ 2912.002.00-------------2.00----------------------------
.........................................................................................................GTCCCACCACGCGGTAGGGTACTCGTA.................................................. 2712.002.00---1.00----------------1.00---------------------
.................................................................................................................................................TTGGCCTGGCAGAGCAGGGGCCA.............. 2312.002.00---------1.00-----1.00--------------------------
....................................................................................................CACCAGTCCCACCACGCGGTAGGGTA........................................................ 2612.002.00-------1.00--1.00-------------------------------
..............................................................................................................................CTCGTACACGGATGGTCACTTGGCCTGG............................ 2812.002.00--------1.00-1.00-------------------------------
.............................................................................................tagCCACCACCAGTCCCA....................................................................... 18tag2.000.00-----------1.00---------1.00--------------------
....................................................................................................................................CACGGATGGTCACTTGGCCTGGCAGAGCA..................... 2912.002.00---1.00----------------------------1.00---------
.................tGGTCGCGGTCCCGGCTGGGAGTGA............................................................................................................................................ 25t2.000.00-----2.00------------------------------------
.......................................................GGTCTGCTGCTGGATGCGTTTGATGG..................................................................................................... 2611.001.001.00-----------------------------------------
.........................................ATGATGTACGTGTTGGTCT.......................................................................................................................... 1911.001.00---------1.00--------------------------------
...................................................................................................CCACCAGTCCCACCACGCGGTA............................................................. 2211.001.00-------1.00----------------------------------
..................................................................................................ACCACCAGTCCCACCACGCGGTA............................................................. 2311.001.00------------1.00-----------------------------
...................................................................................................................................cCACGGATGGTCACTTGGCCTGGCAGAGCA..................... 30c1.002.00----------1.00-------------------------------
.......................................................GGTCTGCTGCTGGATGCG............................................................................................................. 1811.001.00-------------------1.00----------------------
........................................................................................................AGTCCCACCACGCGGTAGGGT......................................................... 2111.001.00----1.00-------------------------------------
.......................................................GGTCTGCTGCTGGATGCGTT........................................................................................................... 2011.001.00-------------1.00----------------------------
...............................................................................................................CCACGCGGTAGGGTACTCGTACA................................................ 2311.001.00---1.00--------------------------------------
...................................GGAGTGATGATGTACGTGTTGGTCTG......................................................................................................................... 2611.001.001.00-----------------------------------------
................................CTGGGAGTGATGATGTACGTG................................................................................................................................. 2111.001.00-----------------------------------1.00------
.........................................................................................................................GGGTACTCGTACACGGATGGTCACT.................................... 2511.001.00--1.00---------------------------------------
..............................................................................................................................CTCGTACACGGATGGTCACTT................................... 2111.001.00-----------------1.00------------------------
...............................................................................................ccccCCACCAGTCCCACCAC................................................................... 20cccc1.000.00-------------------------1.00----------------
.........................................ATGATGTACGTGTTGGTCTGCTGCTGGA................................................................................................................. 2811.001.00-1.00----------------------------------------
.....................................................................................................ACCAGTCCCACCACGCGGTAGGGTA........................................................ 2511.001.00------------1.00-----------------------------
..................................................................................................cCCACCAGTCCCACCACGCGGTA............................................................. 23c1.001.00-------1.00----------------------------------
.................................TGGGAGTGATGATGTACGTGTTGGTC........................................................................................................................... 2611.001.00------------------------------------1.00-----
.................................................cgttTTGGTCTGCTGCTGGATGCGTTTGA........................................................................................................ 29cgtt1.000.00-----1.00------------------------------------
........................................................................................................AGTCCCACCACGCGGT.............................................................. 1611.001.00----------------------------------------1.00-
.............................................................................................................ccCCACGCGGTAGGGTACTCGTACACGGA............................................ 29cc1.000.00--------------------------------------1.00---
................................................................................................accCCACCAGTCCCACCACGCGGTA............................................................. 25acc1.001.00------------------1.00-----------------------
.............................................................................................GGCCCACCACCAGTCCCACCAC................................................................... 2211.001.00----------------------1.00-------------------
....................................................................................................................CGGTAGGGTACTCGTACACGGATGGT........................................ 2611.001.00-------------------------------1.00----------
.................................................................................................................ACGCGGTAGGGTACTCGTAC................................................. 2011.001.00---------1.00--------------------------------
........................................................tTCTGCTGCTGGATGCGTT........................................................................................................... 19t1.000.00----1.00-------------------------------------
.......................................................GGTCTGCTGCTGGATGCGTTTGATGGT.................................................................................................... 2711.001.00-------1.00----------------------------------
.................................................................................................................................GTACACGGATGGTCACTTGGCCTGGCA.......................... 2711.001.00------1.00-----------------------------------
.................................................................................................ccCCACCAGTCCCACCACGCGGTA............................................................. 24cc1.001.00------1.00-----------------------------------
................................................................................................................................................CTTGGCCTGGCAGAGCAGGGGCC............... 2311.001.00----1.00-------------------------------------
..................................................................................................................................TACACGGATGGTCACTTGGCCTGGCAGA........................ 2811.001.00--------1.00---------------------------------
..................................GGGAGTGATGATGTACGTGTTGGTCTG......................................................................................................................... 2711.001.00-1.00----------------------------------------
.................................................................................................tACCACCAGTCCCACCACGCGGTA............................................................. 24t1.001.00--------------------------1.00---------------
................................................................................................aCACCACCAGTCCCACCACGCGGTA............................................................. 25a1.002.00------1.00-----------------------------------
...............................................................................................CCCACCACCAGTCCCACCACGCGGT.............................................................. 2511.001.001.00-----------------------------------------
........................................................................................................AGTCCCACCACGCGGTAGGGTACTCGTA.................................................. 2811.001.00--1.00---------------------------------------
..............................................................................cgtgCGCTCCCTTGGGGCC..................................................................................... 19cgtg1.000.00---------------------------1.00--------------
...............................................................................................CCCACCACCAGTCCCACCAC................................................................... 2011.001.00-------------------1.00----------------------
........................................GATGATGTACGTGTTGGTCTGCTGCTG................................................................................................................... 2711.001.00------1.00-----------------------------------
...................................GGAGTGATGATGTACGTGTTGGTCTGCTG...................................................................................................................... 2911.001.001.00-----------------------------------------
.........................................................................................................GTCCCACCACGCGGTAGGGTACTCGT................................................... 2611.001.00----------------1.00-------------------------
........................................................................................................................AGGGTACTCGTACACGGATGGTC....................................... 2311.001.00----------------1.00-------------------------
..............................................................................TGGTCGCTCCCTTGGGGCCCACCA................................................................................ 2411.001.00----1.00-------------------------------------
................................................ACGTGTTGGTCTGCTGCTGGATGCGTTTGA........................................................................................................ 3011.001.00--------1.00---------------------------------
......................................GTGATGATGTACGTGTTGGTCTGCTGCTGGA................................................................................................................. 3111.001.001.00-----------------------------------------