ID: hsa-mir-658
chr22:38240229-38240428 -
Display Libraries
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(14)
B-CELL
(3)
BRAIN
(19)
BREAST
(31)
CELL-LINE
(5)
CERVIX
(4)
HEART
(3)
HELA
(7)
LIVER
(4)
OTHER
(1)
RRP40.ip
(37)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip
Showing top 152 reads
GGAAGGGTAGTCATTGGTTCGCCGCTCTGTCTCGGCCTGAGCCCGCCCCCGCTCGGTTGCCGTGGTTGCGGGCCCTGCCCGCCCGCCAGCTCGCTGACAGCACGACTCAGGGCGGAGGGAAGTAGGTCCGTTGGTCGGTCGGGAACGAGGCTCAGGCGGCCAGGCCCGCGCGGAGCCGTTGCCATGGCAGCCGCCGCCGG
.....................................................(((((...(((.((.(((......))).)).))))))))...........................................................
...................................................................................................100................................................150................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR139210(SRX050635)
FLASHPage purified small RNA (~15-40nt) from . (testes)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................................................................CGGGAACGAGGCTCAGGCGG.........................................20115.0015.0014.00------------1.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................TGGTCGGTCGGGAACGAG...................................................1819.009.009.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGGAACGAGGCTCAGGC...........................................1818.008.005.00-1.00----------------------------------------------1.00---------------------------------------------1.00----------------------------------
........................................................................................................ACTCAGGGCGGAGGGAAGTAG...........................................................................2118.008.00-4.001.00-----1.00---1.00---------------------------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................CGGGAACGAGGCTCAGGCGGCCAG.....................................2417.007.00-3.002.00------------1.001.00-----------------------------------------------------------------------------------------------------------------
.......................................................................................................GACTCAGGGCGGAGGGAAGTAG...........................................................................2217.007.00-2.002.00--1.00------------1.00---------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................GAGGGAAGTAGGTCCGTTGG..................................................................2016.006.00----4.00----------------------------2.00------------------------------------------------------------------------------------------------
..............................................................................................................................TCCGTTGGTCGGTCGGGAA.......................................................1915.005.00-----2.00-------------------------1.00-------------------------------------------------------------1.00--------------------------1.00---------
......................................................................................................................................TCGGTCGGGAACGAGGC.................................................1715.005.00--2.00---2.00--1.00------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCGGTCGGGAACGAGGCT................................................1815.005.002.00-----1.00------------2.00--------------------------------------------------------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTtcat.........................................................................19TCAT4.500.50---------------------------2.00---------------0.50-------------------------------0.50--------------------------------------------------0.500.500.50-
.........................................................................................................................................GTCGGGAACGAGGCTCAGG............................................1914.004.00-4.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................GGCGGAGGGAAGTAGGTC........................................................................1814.004.00------1.00-----------------------1.00-------------------------------------------------------------1.00--------------------------1.00----------
.......................................................................................................................................CGGTCGGGAACGAGGCT................................................1714.004.004.00---------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGG..................................................1714.004.004.00---------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CTCAGGGCGGAGGGAAGTAGG..........................................................................2113.003.00-2.00------------------------------------1.00-------------------------------------------------------------------------------------------
.......................................................................................................................................CGGTCGGGAACGAGGCTCAGGC...........................................2213.003.00----------------------------------------1.00------1.00--------------------------------1.00-------------------------------------------------
.........................................................................................................................................GTCGGGAACGAGGCTCAGGC...........................................2013.003.00---2.00--------------------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGTAGGT.........................................................................2013.003.00-----1.00------------------------------------------------------1.00---------------------------------------------------1.00-----------------
.....................................................................................................................................GTCGGTCGGGAACGAGGCT................................................1913.003.003.00---------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................TCAGGGCGGAGGGAAGTA............................................................................1813.003.00-------1.00--2.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGTAGGTCCGT.....................................................................2413.003.00---3.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................GCTGACAGCACGACTCAGGG........................................................................................2013.003.00----2.001.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................GACTCAGGGCGGAGGGAAGTAGt..........................................................................23T3.007.00-3.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CGGTCGGGAACGAGGC.................................................1613.003.00--3.00-------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGTAG...........................................................................1813.003.00-------1.00-------------------------------1.00-------------------------------------------------------------------------1.00----------------
........................................................................................................ACTCAGGGCGGAGGGAAGTAGG..........................................................................2213.003.00------------1.00-----1.00--1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CGGTCGGGAACGAGGCTCAGGCGGC........................................2513.003.00--1.00------------------------------------------------------------------------------------------------------------1.00---1.00--------------
.........................................................................................................................................GTCGGGAACGAGGCTCA..............................................1713.003.003.00---------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................TCAGGGCGGAGGGAAGTAG...........................................................................1913.003.00-------------------------------------------------------1.00-----------------------------------1.00--1.00-----------------------------------
.......................................................................................................GACTCAGGGCGGAGGGAAG..............................................................................1913.003.00---2.00---------------------------------------------------------------------------------------------------------------------1.00--------
.........................................................................................................CTCAGGGCGGAGGGAAGTAG...........................................................................2012.002.00---------------1.00-1.00----------------------------------------------------------------------------------------------------------------
.........................................................................................CTCGCTGACAGCACGACTCAG..........................................................................................2112.002.00-------2.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................GTCGGGAACGAGGCTCAGGCG..........................................2112.002.00-1.00-------------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................GTTGGTCGGTCGGGAACGAG...................................................2012.002.00-1.00-----------------------------------------------------------1.00--------------------------------------------------------------------
.......................................................................................................................................CGGTCGGGAACGAGGCTCAG.............................................2012.002.00-1.00--------------------------------------------------------------------------------------------------------1.00-----------------------
......................................................................................................................................TCGGTCGGGAACGAGGCTC...............................................1912.002.00---1.00------------1.00-----------------------------------------------------------------------------------------------------------------
........................CTCTGTCTCGGCCTGAGCC.............................................................................................................................................................1912.002.00--------------------------------------------------------------1.00------------------1.00------------------------------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGGCTC...............................................2012.002.00---1.001.00-----------------------------------------------------------------------------------------------------------------------------
....................................................................................................CACGACTCAGGGCGGAGGGA................................................................................2012.002.00---2.00------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................GGAGGGAAGTAGGTCCGTTGGTCGGTCG...........................................................2812.002.00--------------------------2.00-------------------------------------------------------------------------------------------------------
...............................................................................................................................CCGTTGGTCGGTCGGGAA.......................................................1812.002.00-----2.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................AGGGAAGTAGGTCCGTTGGT.................................................................2012.002.00-------------------------------------------1.00---------------------1.00----------------------------------------------------------------
..............................................................................................................................TCCGTTGGTCGGTCGGGAACGAGGC.................................................2512.002.00------------1.00-------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................GGGCGGAGGGAAGTAGGT.........................................................................1812.002.00--------------1.00---------------------1.00---------------------------------------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTAGGTCCGcct...................................................................25CCT2.000.00-----------------------------------2.00----------------------------------------------------------------------------------------------
.............................................................................................................GGGCGGAGGGAAGTAGGTC........................................................................1912.002.00-----------------------------------------------------------------------------1.00--------------------1.00-------------------------------
........................................................................................................ACTCAGGGCGGAGGGAAG..............................................................................1812.002.00----------------------2.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGTAGG..........................................................................1912.002.00---------------------------------------------------------1.00----------------1.00-------------------------------------------------------
..................................................................................................................GAGGGAAGTAGGTCCGTTGGT.................................................................2112.002.00----------------------------2.00-----------------------------------------------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTtt...........................................................................17TT1.500.50--------------------------------------------1.50-------------------------------------------------------------------------------------
..........................................................................................................TCAGGGCGGAGGGAAG..............................................................................1611.001.00---------------------------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................GGGAACGAGGCTCAGGCGG.........................................1911.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CGGTCGGGAACGAGGCTCAGGCGGCCAG.....................................2811.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
............................................................................................GCTGACAGCACGACTCAGGGCGGAGGGAA...............................................................................2911.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................CGGTCGGGAACGAGG..................................................1511.001.00--------------------------------------------------------------------------------------------------------1.00-------------------------
.........................TCTGTCTCGGCCTGAGCC.............................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------------------------1.00-------------
......................................................................................................................GAAGTAGGTCCGTTGGTCGGTCGGc.........................................................25C1.000.00----------------------------------------------------------------------------------------------------------------------------1.00-----
.............................................................................................................................GTCCGTTGGTCGGTCGGGAACa.....................................................22A1.000.00-----------------------------------------------------------------------------------------------------1.00----------------------------
.........................................................................................................................................GTCGGGAACGAGGCTCAGGCGG.........................................2211.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGGCTCAGGCGG.........................................2611.001.00---1.00------------------------------------------------------------------------------------------------------------------------------
........................................................................................................ACTCAGGGCGGAGGGAAGTAGGT.........................................................................2311.001.00--------------------------------------1.00-------------------------------------------------------------------------------------------
.............................................................................................................GGGCGGAGGGAAGTAGGTCCGTT....................................................................2311.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTAG...........................................................................1711.001.00---------------------------------------------------------------------1.00------------------------------------------------------------
.........................................................................................................................................GTCGGGAACGAGGCTCAGGCGGCCAGG....................................2711.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................CGTTGGTCGGTCGGGAA.......................................................1711.001.00------------------------------------------------------------------------------------------------------------1.00---------------------
....................................................................................................................................GGTCGGTCGGGAACGAGGCTCAGGCG..........................................2611.001.00------------------------------------------------------------------------------------------------1.00---------------------------------
..................................................................................................................................TTGGTCGGTCGGGAACGAGGCTCA..............................................2411.001.00---------------------------------------1.00------------------------------------------------------------------------------------------
...........................................................................................................................AGGTCCGTTGGTCGGTC............................................................1711.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GGGAAGTAGGTCCGTTGGa.................................................................19A1.000.00-----------------------------------------1.00----------------------------------------------------------------------------------------
..............................................................................................................................TCCGTTGGTCGGTCGGGAACGAG...................................................2311.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGGAACGAGGCTCAGGCGGC........................................2111.001.00-------------------------------------------------------------------------------1.00--------------------------------------------------
...............................................................................................................................CCGTTGGTCGGTCGGGAACGAGGCTC...............................................2611.001.00-----------------------------1.00----------------------------------------------------------------------------------------------------
...................................................................................................GCACGACTCAGGGCGGAGGGAA...............................................................................2211.001.00-------------1.00--------------------------------------------------------------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTAGGT.........................................................................1911.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGctc...........................................................................18CTC1.000.00-----------------------------1.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGGAACGAGGCTCAGG............................................1711.001.001.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................GGAGGGAAGTAGGTCCGT.....................................................................1811.001.00----------------------------------------1.00-----------------------------------------------------------------------------------------
......................................................................................................CGACTCAGGGCGGAGGGA................................................................................1811.001.00------1.00---------------------------------------------------------------------------------------------------------------------------
................................................................................................................CGGAGGGAAGTAGGTCCGTTGGT.................................................................2311.001.00-----------------------------------------------------------------------------------1.00----------------------------------------------
............................................................................................GCTGACAGCACGACTCAGGGC.......................................................................................2111.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTAtttt........................................................................20TTTT1.000.00----------------------------------------------------------------------------------------------------1.00-----------------------------
....................................................................................................................................GGTCGGTCGGGAACGAGGC.................................................1911.001.00---1.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................GCGGAGGGAAGTAGGTCC.......................................................................1811.001.00----------------------------------1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................CCGTTGGTCGGTCGGGAACGAGG..................................................2311.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GGGAAGTAGGTCCGTTGGT.................................................................1911.001.00-------------------------------------------------------------------------------------------------------------1.00--------------------
.......................................................................................................................................CGGTCGGGAACGAGGCTCAGGCGG.........................................2411.001.00----------------------------------------------------------------------------------1.00-----------------------------------------------
...............................................................................................................GCGGAGGGAAGTAGGTC........................................................................1711.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................GGGCGGAGGGAAGTAGGTCCGTTGGTCGGTCGG..........................................................3311.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................GCGGAGGGAAGTAGGTCCGT.....................................................................2011.001.00--------------------------------------------------------------------------------------------------------------------------1.00-------
............................................................................................................AGGGCGGAGGGAAGTttat.........................................................................19TTAT1.000.50-------------------------------------------------------------------1.00--------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGTA............................................................................1711.001.00------------------------------------------------------------------1.00---------------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTAGaa.........................................................................19AA1.001.00-----------------------------------------------------------------------1.00----------------------------------------------------------
................................................................................................................CGGAGGGAAGTAGGTCCGTTGG..................................................................2211.001.00---------------------------------------------------1.00------------------------------------------------------------------------------
..............................................................................................................GGCGGAGGGAAGTAGGTCCGTTGGTCGGTCG...........................................................3111.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------
......................................................................................................................GAAGTAGGTCCGTTGGT.................................................................1711.001.00------1.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................AGGTCCGTTGGTCGGTCGG..........................................................1911.001.00----------------------------------1.00-----------------------------------------------------------------------------------------------
..............................................................................................TGACAGCACGACTCAGGGC.......................................................................................1911.001.00--------------------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................CAGGGCGGAGGGAAGTAGGTCCGTTG...................................................................2611.001.00-----------------------------------------------------1.00----------------------------------------------------------------------------
..........................................................................................................TCAGGGCGGAGGGAAGc.............................................................................17C1.001.00------------------------------------------------------------------------------------------1.00---------------------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGGCTCAGGCG..........................................2511.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................ACTCAGGGCGGAGGGAAGTAGGTCCGc.....................................................................27C1.000.00---------------------------------------------------------------------------------------1.00------------------------------------------
............................................................................................GCTGACAGCACGACTCAGGGCG......................................................................................2211.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------
..................................................................................................................GAGGGAAGTAGGTCCGTT....................................................................1811.001.00-----------------------------------------------------------------------------------------1.00----------------------------------------
...........................................................................................................................................CGGGAACGAGGCTCAGGCGGCC.......................................2211.001.00--------------------------------------------------------------------------------------------------------------1.00-------------------
.................................................................................................................GGAGGGAAGTAGGTCCGTTGG..................................................................2111.001.00----1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................GACAGCACGACTCAGGGCGGAGGGAAGTA............................................................................2911.001.00------------------------------------------------------------------------------------------------------1.00---------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGGCTCAG.............................................2211.001.00------------------------------------------------------------------------------------1.00---------------------------------------------
........................................................................................................ACTCAGGGCGGAGGGAAGTAGGTCCGa.....................................................................27A1.000.00--------------------------------------------------1.00-------------------------------------------------------------------------------
..............................................................................................................GGCGGAGGGAAGTAGGTCCGT.....................................................................2111.001.00------------------------------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGGC.................................................1811.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGACTCAGGGCGGAGGG.................................................................................1711.001.00---1.00------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCGGTCGGGAACGAGGCTCAG.............................................2111.001.00------------------------1.00---------------------------------------------------------------------------------------------------------
........AGTCATTGGTTCGCCG................................................................................................................................................................................1611.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................CGACTCAGGGCGGAGGGAAGTAG...........................................................................2311.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................ACGACTCAGGGCGGAGGG.................................................................................1811.001.00------1.00---------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................GTCCGTTGGTCGGTCGGGA........................................................1911.001.00-------------1.00--------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................AGGCCCGCGCGGAGCCGTTGCt.................22T1.000.00----------------------------------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................AGGGAAGTAGGTCCGTgg...................................................................18GG1.000.00-----------------------------------------1.00----------------------------------------------------------------------------------------
.........................................................................................................................GTAGGTCCGTTGGTCGGT.............................................................1811.001.00---------------------------------------------------------------------------------------------------------1.00------------------------
.......................................................................................................GACTCAGGGCGGAGGGAAGTA............................................................................2111.001.00---------------------------------------------------------------------------------------------------------------------------1.00------
........................................................................................................ACTCAGGGCGGAGGGAAGTAGGc.........................................................................23C1.003.00------------------1.00---------------------------------------------------------------------------------------------------------------
.......................................................................................................................AAGTAGGTCCGTTGGTCGGT.............................................................2011.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................TGGTCGGTCGGGAACGAGGCT................................................2111.001.00------------------------------1.00---------------------------------------------------------------------------------------------------
.................................................................................................................................GTTGGTCGGTCGGGAACGAGGC.................................................2211.001.00-------------------------------------------------------------------------------------------------1.00--------------------------------
.............................................................................................................................GTCCGTTGGTCGGTCGGGAACGAGGC.................................................2611.001.00-------------------------------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................GGGAAGTAGGTCCGTTGGTCGGTCG...........................................................2511.001.00-------------------------------------------------------------------------------------------------------1.00--------------------------
.....................................................................................................................................GTCGGTCGGGAACGAGGCTCAGGCGGCCAG.....................................3011.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
................................................................................................ACAGCACGACTCAGGGCGGAGGGAAGTAG...........................................................................2911.001.00---------------------------------------------------------------------------------------------------1.00------------------------------
............................................................................................................AGGGCGGAGGGAAGT.............................................................................1520.500.50---------------------------------------------------------------------------0.50------------------------------------------------------
............................................................................................................AGGGCGGAGGGAAGTttt..........................................................................18TTT0.500.50-----------------------------------------------------------------------------------------------------------------------------0.50----
...........................................................................................................................................................GCGGCCAGGCCCGCG..............................1560.170.17---------------------------------------------------------------------------------------------------------------------------------0.17
GGAAGGGTAGTCATTGGTTCGCCGCTCTGTCTCGGCCTGAGCCCGCCCCCGCTCGGTTGCCGTGGTTGCGGGCCCTGCCCGCCCGCCAGCTCGCTGACAGCACGACTCAGGGCGGAGGGAAGTAGGTCCGTTGGTCGGTCGGGAACGAGGCTCAGGCGGCCAGGCCCGCGCGGAGCCGTTGCCATGGCAGCCGCCGCCGG
.....................................................(((((...(((.((.(((......))).)).))))))))...........................................................
...................................................................................................100................................................150................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR139210(SRX050635)
FLASHPage purified small RNA (~15-40nt) from . (testes)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.....................................................................................................................................................................................ccgcGGCAGCCGCCGCCGG 19ccgc13.000.00--------1.00--3.00--------1.00----2.00------1.00---------------1.00-----1.00-----------------1.001.00--1.00-----------------------------------------------------
................................ccGCCTGAGCCCGCCCCC...................................................................................................................................................... 18cc3.000.00---------2.00-------------------------------------------------1.00----------------------------------------------------------------------
.................................cGCCTGAGCCCGCCCCCGC.................................................................................................................................................... 19c2.001.00-------------------1.00--------------------------------------------------------------------------------------------------1.00-----------
...............................ccaGCCTGAGCCCGCCCCC...................................................................................................................................................... 19cca1.000.00---------1.00------------------------------------------------------------------------------------------------------------------------
........................................................................aCCTGCCCGCCCGCCAG............................................................................................................... 17a1.000.00--------------------------------------------------------1.00-------------------------------------------------------------------------
...........................................................................TGCCCGCCCGCCAGCTCGC.......................................................................................................... 1911.001.00-----------------------------------------------------------------------------------------------------------1.00----------------------
........................................................................................................................gcagGGTCCGTTGGTCGGT............................................................. 19gcag1.000.00---------------------------------------------------------------1.00------------------------------------------------------------------
..................................GCCTGAGCCCGCCCCCGC.................................................................................................................................................... 1811.001.00--------------------------------------------------------------------------------------1.00-------------------------------------------
...................................tggGAGCCCGCCCCCGCT................................................................................................................................................... 18tgg1.000.00----------------------------------------------------------------------------------------1.00-----------------------------------------
......................................................................................................................................................................................cgcGGCAGCCGCCGCCGG 18cgc1.000.00-------------------------------------------------------------------------------------1.00--------------------------------------------
................................................aaggTCGGTTGCCGTGGTTG.................................................................................................................................... 20aagg1.000.00------------------------------------------------------------------------------1.00---------------------------------------------------
...................................................................accGGCCCTGCCCGCCCG................................................................................................................... 18acc1.000.00----------------------------------------------------------------------1.00-----------------------------------------------------------
............acgcGTTCGCCGCTCTGTC......................................................................................................................................................................... 19acgc1.000.00----------------------------------------------------------------1.00-----------------------------------------------------------------
..............................ccccGCCTGAGCCCGCCCCC...................................................................................................................................................... 20cccc1.000.00-------------------------------------1.00--------------------------------------------------------------------------------------------
...................................aggGAGCCCGCCCCCGCT................................................................................................................................................... 18agg1.000.00------------------------------------------1.00---------------------------------------------------------------------------------------
................................ccgtCTGAGCCCGCCCCCG..................................................................................................................................................... 19ccgt1.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------
...............................cccGCCTGAGCCCGCCCC....................................................................................................................................................... 18ccc1.000.00------------------------------------------------------------------------------------------------------------------1.00---------------
...................................acaGAGCCCGCCCCCGCT................................................................................................................................................... 18aca1.000.00------------------------------------------1.00---------------------------------------------------------------------------------------
..............................acccGCCTGAGCCCGCCCC....................................................................................................................................................... 19accc1.000.00---------------------------------------------------------------------------------------------------------------------1.00------------
.......................................................................................................................................gGGTCGGGAACGAGGC................................................. 16g1.000.00---------------------1.00------------------------------------------------------------------------------------------------------------
................................acGCCTGAGCCCGCCCCC...................................................................................................................................................... 18ac1.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------