ID: hsa-mir-583
chr5:95414792-95414966 +
Display Libraries
(2)
BREAST 		(7)
CELL-LINE 		(2)
HELA 		(2)
LIVER 		(1)
LUNG 		(5)
OTHER 		(4)
SKIN 		(1)
XRN.ip
Showing top 47 reads
TTAAAAAAAAACCTATTTAAATGATAGGAAGGCTGTTCTTTACATCTTACAACTCACACATTAACCAAAGAGGAAGGTCCCATTACTGCAGGGATCTTAGCAGTACTGGGACCTACCTCTTTGGTACTTTCCCCTGGGCCCCCTTCATTTCACTCCCTACCCACACTCTTTGTCC
...............................................................((((((((((.((((((((.(((((((((...))).)))))).)))))))).))))))))))..................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR189783SRR029125(GSM416754)
U2OS. (cell line)		SRR189784SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR139182(SRX050651)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR139186(SRX050632)
FLASHPage purified small RNA (~15-40nt) from . (lung)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.......................................................................................................TACTGGGACCTACCTCTTTGGT..................................................2212.002.00--2.00--------------------
............................................................................................GATCTTAGCAGTACTGtg.................................................................18TG1.000.00-------------------1.00---
......................GATAGGAAGGCTGTTCTTT......................................................................................................................................1911.001.00----------------------1.00
..........................................................................................................................................................CCCTACCCACACTCTTga...18GA1.000.00-----------1.00-----------
....................................................................................................................................CCTGGGCCCCCTTCAccg.........................18CCG1.000.00-----1.00-----------------
........................................................................................................ACTGGGACCTACCTCTTcg....................................................19CG1.000.001.00----------------------
......................................................................................................................CTTTGGTACTTTCCCatt.......................................18ATT1.000.00--------------------1.00--
........................................................CACATTAACCAAAGAtaa.....................................................................................................18TAA1.000.00------------1.00----------
........................................................................................................ACTGGGACCTACCTCTTTG....................................................1911.001.001.00----------------------
TTAAAAAAAAACCTATTTAAATGATAGGAAGGCTGTTCTTTACATCTTACAACTCACACATTAACCAAAGAGGAAGGTCCCATTACTGCAGGGATCTTAGCAGTACTGGGACCTACCTCTTTGGTACTTTCCCCTGGGCCCCCTTCATTTCACTCCCTACCCACACTCTTTGTCC
...............................................................((((((((((.((((((((.(((((((((...))).)))))).)))))))).))))))))))..................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR189783SRR029125(GSM416754)
U2OS. (cell line)		SRR189784SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR139182(SRX050651)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR139186(SRX050632)
FLASHPage purified small RNA (~15-40nt) from . (lung)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................AAAGAGGAAGGTCCCATTACT........................................................................................ 21111.0011.0011.00----------------------
.............................................................gatCCAAAGAGGAAGGTCCCATTAC......................................................................................... 25gat8.001.00-8.00---------------------
.................................................................CAAAGAGGAAGGTCCCATTAC......................................................................................... 2116.006.006.00----------------------
.................................................................CAAAGAGGAAGGTCCCATTACT........................................................................................ 2213.003.002.00-----------------1.00----
................................................................aaAAAGAGGAAGGTCCCATTAC......................................................................................... 22aa5.001.004.00------------1.00---------
.................................................................tAAAGAGGAAGGTCCCATTACT........................................................................................ 22t4.0011.003.00--------------1.00-------
..................................................................AAAGAGGAAGGTCCCATTACTG....................................................................................... 2214.004.00---4.00-------------------
................................................................aCAAAGAGGAAGGTCCCATTACT........................................................................................ 23a3.003.003.00----------------------
.............................................................TAACCAAAGAGGAAGGTCCCATTA.......................................................................................... 2413.003.00----3.00------------------
...............................................................aaaAAAGAGGAAGGTCCCATTAC......................................................................................... 23aaa2.001.002.00----------------------
.................................................................atAAGAGGAAGGTCCCATTACT........................................................................................ 22at2.001.002.00----------------------
................................................................gaAAAGAGGAAGGTCCCATTAC......................................................................................... 22ga2.001.002.00----------------------
................................................................CCAAAGAGGAAGGTCCCATTACT........................................................................................ 2312.002.00------2.00----------------
....................................................................................................CAGTACTGGGACCTACCTCTTT..................................................... 2212.002.00--------2.00--------------
............................................................................................................................................CCCTTCATTTCACTCCCT................. 1821.501.50---------1.50-------------
....................................................................AGAGGAAGGTCCCATTACT........................................................................................ 1911.001.00-----1.00-----------------
...............tcacAATGATAGGAAGGCT............................................................................................................................................. 19tcac1.000.00-------1.00---------------
..............................................................tACCAAAGAGGAAGGTCCCATTA.......................................................................................... 23t1.001.00---------------------1.00-
..................................................................AAAGAGGAAGGTCCCATTAC......................................................................................... 2011.001.00-----1.00-----------------
....................................................................atAGGAAGGTCCCATTACT........................................................................................ 19at1.000.001.00----------------------
...................................................................................................GCAGTACTGGGACCTACCTCT....................................................... 2111.001.001.00----------------------
..................................................................aaaaAGGAAGGTCCCATTACTG....................................................................................... 22aaaa1.000.001.00----------------------
..................................................................gaaaAGGAAGGTCCCATTACT........................................................................................ 21gaaa1.000.001.00----------------------
.................................................................taagGAGGAAGGTCCCATTACTG....................................................................................... 23taag1.000.001.00----------------------
.....................................................................GAGGAAGGTCCCATTACTGCA..................................................................................... 2111.001.001.00----------------------
...................................................................AAGAGGAAGGTCCCATTACT........................................................................................ 2011.001.001.00----------------------
................................................................tCAAAGAGGAAGGTCCCATTA.......................................................................................... 21t1.000.001.00----------------------
..................................................................................................AGCAGTACTGGGACCTACCTCTTT..................................................... 2411.001.00-------1.00---------------
cttgAAAAAAAAACCTATT.............................................................................................................................................................. 19cttg1.000.00----------------1.00------
...................................................................................................aCAGTACTGGGACCTACCTCTTT..................................................... 23a1.002.00----------1.00------------
..................................................................aagGAGGAAGGTCCCATTACT........................................................................................ 21aag1.000.001.00----------------------
..................................................................aaacAGGAAGGTCCCATTACT........................................................................................ 21aaac1.000.001.00----------------------
...................................................................................................GCAGTACTGGGACCTACCTCTTTG.................................................... 2411.001.00------1.00----------------
...............................................................ACCAAAGAGGAAGGTCCCATTA.......................................................................................... 2211.001.00----1.00------------------
.................................................................CAAAGAGGAAGGTCCCATT........................................................................................... 1911.001.001.00----------------------
...................................................................................................aCAGTACTGGGACCTACCTCTTTG.................................................... 24a1.000.00-----------------1.00-----
................................................................CCAAAGAGGAAGGTCCCATTAC......................................................................................... 2211.001.001.00----------------------
...........................................................ttaAACCAAAGAGGAAGGTCCCATTA.......................................................................................... 26tta1.000.00--------------1.00--------
....................................................................aaAGGAAGGTCCCATTACT........................................................................................ 19aa1.000.001.00----------------------