ID: hsa-mir-4483
chr10:115537702-115537863 -
Display Libraries
(1)
AGO2.ip
(15)
B-CELL
(2)
BRAIN
(10)
BREAST
(32)
CELL-LINE
(4)
HELA
(2)
LIVER
(1)
OTHER
(1)
PLACENTA
(1)
RRP40.ip
(5)
SKIN
(1)
TESTES
(1)
XRN.ip
Showing top 78 reads
AATTAACACATGAAGACTGCAGTGATATGCAGGACAATAGCTAGTCCTTGAAAAAACAACATACTTAGTGCATACCCATATAATATTAGGGGTGGTCTGTTGTTGTTTTTCTTTTGAGACAGGGTCTCGCTCTGTCTTCCAGGCTGGAGTGCAGTGGTGCAA
...................................................((((((((((....(((.((.(((((.((......)).)))))))))).))))))))))....................................................
..................................................51...........................................................112................................................
SizePerfect hitTotal NormPerfect NormSRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR037938(GSM510476)
293Red. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189787SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
TAX577746(Rovira)
total RNA. (breast)
SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR139200(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)
SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR139209(SRX050635)
FLASHPage purified small RNA (~15-40nt) from . (testes)
SRR029127(GSM416756)
A549. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
........................................................................................GGGGTGGTCTGTTGTTtt........................................................18TT1007.006.00570.00204.0042.0015.0011.0021.00---16.0013.003.00-12.0010.0010.008.005.006.004.004.001.004.00-3.005.004.004.003.00-3.00-1.00-2.002.00---2.001.002.002.001.00-1.00-1.00--1.001.00----1.00-1.00-1.00-1.001.001.00--1.00--1.001.00------
........................................................................................GGGGTGGTCTGTTGTTt.........................................................17T73.006.00---21.0012.00------9.0011.00--------4.00--2.00----3.00--2.00---2.002.00--1.00------------1.00--------------1.00---1.001.00----
........................................................................................GGGGTGGTCTGTTGTTta........................................................18TA51.006.0024.0017.003.001.00------1.00---1.001.00-2.00----1.00-------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTtta.......................................................19TTA17.006.007.009.00-----------------1.00----------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTtaa.......................................................19TAA17.006.0011.004.00--------------------------1.00--------------------------------1.00----------------
........................................................................................GGGGTGGTCTGTTGTTttt.......................................................19TTT9.006.006.002.00------------------1.00---------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTT..........................................................1616.006.00---2.003.00------1.00------------------------------------------------------------------
......................................................................................................................................TCTTCCAGGCTGGAGTGCAGcgac....24CGAC4.000.00------2.002.00----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTtg........................................................18TG4.006.00-2.001.00-1.00-------------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTtaaa......................................................20TAAA4.006.001.002.001.00---------------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTttaa......................................................20TTAA4.006.003.001.00----------------------------------------------------------------------------
.................................................................................................TGTTGTTGTTTTTCTTTTGttc...........................................22TTC3.000.00-------------------------------2.00---------------------------------1.00------------
........................................................................................GGGGTGGTCTGTTGTTtc........................................................18TC3.006.003.00-----------------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTGT........................................................1813.003.001.002.00----------------------------------------------------------------------------
............................................................................................................................................AGGCTGGAGTGCAGTGGTGCAgcgg25GCGG2.000.00-------2.00----------------------------------------------------------------------
.........................................................................................................................................TCCAGGCTGGAGTGCAGTGcagg..23CAGG2.000.00-------2.00----------------------------------------------------------------------
.......................................................................................AGGGGTGGTCTGTTGTTt.........................................................18T2.000.002.00-----------------------------------------------------------------------------
..................................................................................................GTTGTTGTTTTTCTTaggc.............................................19AGGC2.000.00------2.00-----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTa.........................................................17A2.006.00---1.00--------1.00-----------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTaaa.......................................................19AAA2.006.00-2.00----------------------------------------------------------------------------
.........................................................................................................................................TCCAGGCTGGAGTGCAcggc.....20CGGC2.000.00------1.001.00----------------------------------------------------------------------
............................................................................................................................................AGGCTGGAGTGCAGTGGTGCtggt24TGGT1.000.00---------------------------------------------------------------------1.00--------
....................................................................................................................AGACAGGGTCTCGCTCccc...........................19CCC1.000.00--------------------------------------1.00---------------------------------------
.......................................................................................AGGGGTGGTCTGTTGTTtt........................................................19TT1.000.001.00-----------------------------------------------------------------------------
.........................................................................................................................................TCCAGGCTGGAGTGCAGTGacgg..23ACGG1.000.00------1.00-----------------------------------------------------------------------
.............................................................................................................TCTTTTGAGACAGGGTCTCGCTCcgtc..........................27CGTC1.000.00-------1.00----------------------------------------------------------------------
...................................................................................................................................................AGTGCAGTGGTGCAAcccg19CCCG1.000.00------------------------------------------------------1.00-----------------------
.........................................................................................................................................TCCAGGCTGGAGTGCAGTGcgcc..23CGCC1.000.00-------1.00----------------------------------------------------------------------
..................................................................................................................TGAGACAGGGTCTCGCTCcgcc..........................22CGCC1.000.00------1.00-----------------------------------------------------------------------
......................................................................................................................................TCTTCCAGGCTGGAGTGCAGggtg....24GGTG1.000.00------1.00-----------------------------------------------------------------------
.......................................................................................AGGGGTGGTCTGTTGTTta........................................................19TA1.000.00-1.00----------------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTGg........................................................18G1.000.001.00-----------------------------------------------------------------------------
...............................................................................................TCTGTTGTTGTTTTTgaac................................................19GAAC1.000.00------------------------------------------------1.00-----------------------------
......................................................................................................................ACAGGGTCTCGCTCTaaa..........................18AAA1.000.00---------------------------------1.00--------------------------------------------
......................................................................................................................................TCTTCCAGGCTGGAGTGCAGTGGTGgg.27GG1.000.00-------1.00----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTttc.......................................................19TTC1.006.001.00-----------------------------------------------------------------------------
......................................................................................................TTGTTTTTCTTTTGAGAgtc........................................20GTC1.000.00------1.00-----------------------------------------------------------------------
...................................................................................................TTGTTGTTTTTCTTTTGAag...........................................20AG1.000.00------1.00-----------------------------------------------------------------------
....................................................................................................TGTTGTTTTTCTTTTGAtct..........................................20TCT1.000.00---------------------------------1.00--------------------------------------------
...........................TGCAGGACAATAGCTct......................................................................................................................17CT1.000.00------------------------------------------------------------------1.00-----------
........................................................................................GGGGTGGTCTGTTGTTaa........................................................18AA1.006.00-------------------1.00----------------------------------------------------------
.........................................................................................................................................TCCAGGCTGGAGTGCAGTGGgcgg.24GCGG1.000.00------1.00-----------------------------------------------------------------------
.........................................................................................................TTTTTCTTTTGAGACAGGGctg...................................22CTG1.000.00------1.00-----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTGTTggg....................................................22GGG1.000.00-----1.00------------------------------------------------------------------------
.........................................................................................................................................TCCAGGCTGGAGTGCAGcgca....21CGCA1.000.00------1.00-----------------------------------------------------------------------
........................................................................................................................................TTCCAGGCTGGAGTGCAGTGaac...23AAC1.000.00---------------------------------------------------------1.00--------------------
.................................................................................................TGTTGTTGTTTTTCTTTTGtgc...........................................22TGC1.000.00-------------------------------1.00----------------------------------------------
........................................................................................GGGGTGGTCTGTTGTTct........................................................18CT1.006.001.00-----------------------------------------------------------------------------
............................................................................................................................TCTCGCTCTGTCTTCCAGGCTGGAGa............26A1.000.00-------------------------------------------------1.00----------------------------
...............................................................................................TCTGTTGTTGTTTTTCTTTTcgag...........................................24CGAG1.000.00-------1.00----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTctt........................................................18CTT0.670.330.330.33----------------------------------------------------------------------------
............................................................................................................................................AGGCTGGAGTGCAGTGGTcgg.21CGG0.500.00-------0.50----------------------------------------------------------------------
................................................................................................CTGTTGTTGTTTTTCTTT................................................1870.430.43-------0.14-------------------------0.29--------------------------------------------
............................................................................................................................................AGGCTGGAGTGCAGTGGTGggta23GGTA0.330.00-------0.33----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTctg........................................................18CTG0.330.33-0.33----------------------------------------------------------------------------
..........................................................................................................................................CCAGGCTGGAGTGCAGTGGTGaaca25AACA0.330.00-------0.33----------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTgtta.......................................................19GTTA0.330.33-0.33----------------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGTcgt........................................................18CGT0.330.33-----0.33------------------------------------------------------------------------
........................................................................................GGGGTGGTCTGTTGT...........................................................1530.330.33---0.33--------------------------------------------------------------------------
..........................................................................................................................................CCAGGCTGGAGTGCAGTcgac...21CGAC0.170.00---------------------------------------------------------------------------0.17--
..........................................................................................................................................CCAGGCTGGAGTGCAGTtaga...21TAGA0.170.00--------------------------------------------------------------------------0.17---
...........................................................................................................................................CAGGCTGGAGTGCAGTattt...20ATTT0.140.00----------------------------------------------------------------------------0.14-
...........................................................................................................................................CAGGCTGGAGTGCAGTctac...20CTAC0.140.00-----------------------------------------------------------------------------0.14
AATTAACACATGAAGACTGCAGTGATATGCAGGACAATAGCTAGTCCTTGAAAAAACAACATACTTAGTGCATACCCATATAATATTAGGGGTGGTCTGTTGTTGTTTTTCTTTTGAGACAGGGTCTCGCTCTGTCTTCCAGGCTGGAGTGCAGTGGTGCAA
...................................................((((((((((....(((.((.(((((.((......)).)))))))))).))))))))))....................................................
..................................................51...........................................................112................................................
SizePerfect hitTotal NormPerfect NormSRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR037938(GSM510476)
293Red. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189787SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
TAX577746(Rovira)
total RNA. (breast)
SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR139200(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)
SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR139209(SRX050635)
FLASHPage purified small RNA (~15-40nt) from . (testes)
SRR029127(GSM416756)
A549. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
...............................................tccgAAAAACAACATACTT................................................................................................ 19tccg21.000.00--------15.00--------------5.00-------------------------------1.00----------------------
.........................................................................................................................................gctcGGCTGGAGTGCAGTGGTGCAA 25gctc3.000.00------2.001.00----------------------------------------------------------------------
.........................................................................................................................................gtccGGCTGGAGTGCAGTGGTGCA. 24gtcc3.000.00------3.00-----------------------------------------------------------------------
................................................ccgAAAAACAACATACTT................................................................................................ 18ccg2.000.00--------2.00---------------------------------------------------------------------
.........................................................................................................................................gtccGGCTGGAGTGCAGTGGTGCAA 25gtcc2.000.00-------2.00----------------------------------------------------------------------
.........................................................................................................................................tgccGGCTGGAGTGCAGTGGTGCA. 24tgcc2.000.00------2.00-----------------------------------------------------------------------
.............................................................................................................tcccTTGAGACAGGGTCTCGCTCTGT........................... 26tccc1.000.00-------1.00----------------------------------------------------------------------
.......................................................................................ccGGGTGGTCTGTTGTTGT........................................................ 19cc1.000.00--------------------------------------1.00---------------------------------------
.......................................................................................................................................atggCAGGCTGGAGTGCAGTGGTGCA. 26atgg1.000.00-----------------------------------------------------------1.00------------------
.........................................................................................................................................gctcGGCTGGAGTGCAGTGGTGCA. 24gctc1.000.00------1.00-----------------------------------------------------------------------
........................agcaGCAGGACAATAGCTA....................................................................................................................... 19agca1.000.00--------------------------------------------1.00---------------------------------
.........................................................................................................................................tgtgGGCTGGAGTGCAGTGGTGC.. 23tgtg1.000.00----------------------------------------------------1.00-------------------------
..................................................................................................................cggGACAGGGTCTCGCTCTGT........................... 21cgg1.000.00-------1.00----------------------------------------------------------------------
.........................................................................................................................................gatcGGCTGGAGTGCAGTGGTGCA. 24gatc1.000.00-------1.00----------------------------------------------------------------------
........................................................................................................................................ctatAGGCTGGAGTGCAGTGGTGCA. 25ctat1.000.00----------------------------------------------1.00-------------------------------
.......................................................................................................................CAGGGTCTCGCTCTGTCTTCCAGGCT................. 26100.100.10------0.10-----------------------------------------------------------------------