ID: hsa-mir-3646
chr20:43036710-43036893 +
Display Libraries
(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(5)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(4)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(24)
SKIN 		(1)
XRN.ip
Showing top 37 reads
GCTTCCTGCTACCAGCAGGTATCAGTCACTGGGCTGTGCTTTTTCCACACTTCAGTAGGTTGGGTTCATTTCATTTTCATGACAACCCTATATGGGAAAATGTTGTGAAAATGAAATGAGCCCAGCCCATTGAACCTATTACAATTCCTCCCTTTTTGTGGATGAAGGAACTGAGGCCCACAAT
....................................................((((((.((((((((((((((((((((((..(((.(((.....)))....)))..)))))))))))))))))))))).))))))..................................................
..................................................51...................................................................................136................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189784DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR139173(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR139179(SRX050638)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
.......................................................................................................TGTGAAAATGAAATGAGCCCAGC..........................................................23146.0046.0015.0012.00-5.00----1.001.001.002.00--1.00-1.00--1.00-1.00---------1.00-1.00--------1.001.00-1.00-------
........................................................................................................GTGAAAATGAAATGAGCCCAGC..........................................................2217.007.005.001.00---------------------------------1.00-----------------
.......................................................TAGGTTGGGTTCATTTCATTTTCATGACAACCCTATATGGGAAAATGTTGTGAAAATGAAATGAtcct.............................................................68TCCT7.000.00--7.00--------------------------------------------------
.............................................................................................................................................................GTGGATGAAGGAACTGg..........17G4.000.00----4.00------------------------------------------------
.......................................................TAGGTTGGGTTCATTTCATTTTCATGACAACCCTATATGGGAAAATGTTGTGAAAATGAAATGAttt..............................................................67TTT4.000.00-----4.00-----------------------------------------------
.......................................................................................................TGTGAAAATGAAATGAGCCCAGt..........................................................23T3.001.00----------------------------1.00-----------1.001.00-----------
...........................................................................................................AAAATGAAATGAGCCCAGCCCAT......................................................2313.003.00--------1.00---------1.00-----1.00----------------------------
...........................................................TTGGGTTCATTTCATTTTCATG.......................................................................................................2222.502.50-------------1.500.50----------------------------------0.50---
...........................................................TTGGGTTCATTTCATTTTCATGA......................................................................................................2312.002.00-------2.00---------------------------------------------
...........................................................................................................AAAATGAAATGAGCCCAGCCCA.......................................................2212.002.00---------------------------1.00-1.00-----------------------
...................................................................................................ATGTTGTGAAAATGAAATGAGC...............................................................2212.002.00-----------------1.00----------------1.00------------------
...........................................................................................................AAAATGAAATGAGCCCAGCCC........................................................2111.001.00----------------------1.00------------------------------
............................................................TGGGTTCATTTCATTTTCATGA......................................................................................................2211.001.00-----------------------1.00-----------------------------
.........................................................................................................TGAAAATGAAATGAGCCCAGC..........................................................2111.001.00---------1.00-------------------------------------------
.......................................................................................................TGTGAAAATGAAATGAGCCCAG...........................................................2211.001.00--------------------------------------1.00--------------
.......................................................................................................TGTGAAAATGAAATGAGCCCAa...........................................................22A1.000.00-------------------------------------1.00---------------
............................................................................................................AAATGAAATGAGCCCAGCCCAaaa....................................................24AAA1.000.00---------------1.00-------------------------------------
...........................................................TTGGGTTCATTTCATTTTC..........................................................................................................1921.001.00-----------------------------------------------0.50--0.50--
.........................................................................................................TGAAAATGAAATGAGCCCAGta.........................................................22TA1.000.00----------1.00------------------------------------------
................................................................TTCATTTCATTTTCATGACAACa.................................................................................................23A1.000.00------------------------------------1.00----------------
.......................................................................................................TGTGAAAATGAAATGAGCCgagc..........................................................23GAGC1.000.00-1.00---------------------------------------------------
.........................................................................................................TGAAAATGAAATGAGCCCAGCCta.......................................................24TA1.000.00------------------------------1.00----------------------
.....................................................................................................................................................CCCTTTTTGTGGATGAAGGAA..............2111.001.00------1.00----------------------------------------------
...................................................................ATTTCATTTTCATGACtcc..................................................................................................19TCC1.000.00----------------------------------------------1.00------
.......................................................................................................TGTGAAAATGAAATGAGCCCAGCa.........................................................24A1.0046.00--------------------------1.00--------------------------
..................................................TTCAGTAGGTTGGGTTCATTT.................................................................................................................2111.001.00------------1.00----------------------------------------
......................................................GTAGGTTGGGTTCATTTCAT..............................................................................................................2011.001.00---------------------------------------1.00-------------
................................................................TTCATTTCATTTTCATGACAA...................................................................................................2121.001.00--------------------1.00--------------------------------
.....................................................AGTAGGTTGGGTTCATTTCATT.............................................................................................................2211.001.00------------1.00----------------------------------------
...........................................................................................................................................................TTGTGGATGAAGGAACTGAGGCCCA....2511.001.00--------------------------------------------1.00--------
.............................................................................................................................................................GTGGATGAAGGAACTGAGGCC......2111.001.00------1.00----------------------------------------------
.............................................................................................................................................................GTGGATGAAGGAACTGAGGC.......2020.500.50------0.50----------------------------------------------
...........................................................TTGGGTTCATTTCATTTTCATGt......................................................................................................23T0.502.50------------------------------------------------0.50----
............................................................TGGGTTCATTTCATTTTC..........................................................................................................1830.330.33---------------------------------------------------0.33-
.........................................................................................................................................................................ACTGAGGCCCACAAT1570.140.14----------------------------------------------------0.14
................................................................................................................................................................GATGAAGGAACTGAGGCC......18100.100.10-------------0.10---------------------------------------
GCTTCCTGCTACCAGCAGGTATCAGTCACTGGGCTGTGCTTTTTCCACACTTCAGTAGGTTGGGTTCATTTCATTTTCATGACAACCCTATATGGGAAAATGTTGTGAAAATGAAATGAGCCCAGCCCATTGAACCTATTACAATTCCTCCCTTTTTGTGGATGAAGGAACTGAGGCCCACAAT
....................................................((((((.((((((((((((((((((((((..(((.(((.....)))....)))..)))))))))))))))))))))).))))))..................................................
..................................................51...................................................................................136................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189784DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR139173(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR139179(SRX050638)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
............................ttctGCTGTGCTTTTTCCA......................................................................................................................................... 19ttct1.000.00-------------------------1.00---------------------------
.......................................................................................................gaccAAAATGAAATGAGCC.............................................................. 19gacc1.000.00--------------------------------1.00--------------------