ID: hsa-mir-3189
chr19:18497322-18497494 +
Display Libraries
(1)
AGO1.ip 		(1)
AGO2.ip 		(7)
BREAST 		(23)
CELL-LINE 		(1)
FIBROBLAST 		(4)
HELA 		(4)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(1)
OTHER 		(2)
OVARY 		(2)
SKIN
Showing top 56 reads
CATATCTAATCAGGGATTCCTCATCTTGAAAAGCCCAGACCTACCTTTGAGCCTCAGTTGCCCCATCTGTGCCCTGGGTAGGAATATCCTGGATCCCCTTGGGTCTGATGGGGTAGCCGATGCCTGATTTGCACCCACAACGTGGGAGGTTATAACCTGTCCCCAAGTTGCAA
..................................................((.(((((((((((...((((.(((((((.....))))....)))..))))..))))))))))).)).....................................................
.....................................................54...................................................................123................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029130(GSM416759)
DLD2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR139172(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR139171(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR038858(GSM458541)
MEL202. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR139174(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR139173(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR139184(SRX050632)
FLASHPage purified small RNA (~15-40nt) from . (lung)		SRR139178(SRX050638)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR139192(SRX050634)
FLASHPage purified small RNA (~15-40nt) from . (ovary)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR139180(SRX050638)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR139194(SRX050634)
FLASHPage purified small RNA (~15-40nt) from . (ovary)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
...............................................................................................CCCTTGGGTCTGATGGGGTAGC........................................................22160.0060.00--16.005.008.005.001.008.002.002.002.004.00--1.002.00-1.00---1.00-----2.00----------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAG.........................................................21158.0058.008.0012.006.006.003.004.00--4.00--1.002.00--1.002.00--------2.001.00-----1.00------1.00-1.00-1.00-1.00---1.00
..........................................................TGCCCCATCTGTGCCCTGGGTAGG...........................................................................................24127.0027.0016.00---2.001.001.001.00-3.00-1.00--1.00--------------1.00--------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGt........................................................22T15.0058.00-2.00-2.001.001.001.001.00-1.00----1.00-1.001.00-1.00--------1.00-----------------1.00---
...............................................................................................CCCTTGGGTCTGATGGGGTA..........................................................20110.0010.00--1.00---1.00---2.00-1.00----1.00--2.00-----1.00-------1.00---------------
..........................................................TGCCCCATCTGTGCCCTGGGTAGGA..........................................................................................2517.007.00--1.00---5.00----------1.00--------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGa........................................................22A6.0058.00-3.00------1.00-2.00---------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCat......................................................24AT6.0060.00-----1.003.00--------1.00----1.00-----------------------------
...................................................................................................TGGGTCTGATGGGGTAGCCGAT....................................................2215.005.00-1.00------1.00----1.00--------2.00---------------------------
..........................................................TGCCCCATCTGTGCCCTGGGTAG............................................................................................2315.005.00-2.00-------2.00----1.00-----------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCt.......................................................23T5.0060.00-1.00-----------1.00----1.002.00------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCa.......................................................23A4.0060.00----1.001.00---------------1.00-1.00--------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGta.......................................................23TA4.0058.00----1.00-----------1.00-----------------------1.00------1.00--
...................................................................................................TGGGTCTGATGGGGTAGCCGttt...................................................23TTT3.000.00---3.00----------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGaat......................................................24AAT3.0058.00---3.00----------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGaaa......................................................24AAA3.0058.00-----2.00------------------------------------1.00-------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCaa......................................................24AA2.0060.00-----1.00------------1.00-------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGtt.......................................................23TT2.0058.00----2.00---------------------------------------------
..........................................................TGCCCCATCTGTGCCCTGGGTAGa...........................................................................................24A2.005.00-------------------------------1.00----1.00-------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGaa.......................................................23AA2.0058.00---1.00--------------------1.00-------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCtta.....................................................25TTA2.0060.00--------2.00-----------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCac......................................................24AC1.0060.00-----1.00--------------------------------------------
..................................................................................................TTGGGTCTGATGGGGTAGCCGA.....................................................2211.001.00----1.00---------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGcagc........................................................22CAGC1.000.001.00-------------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGCatt.....................................................25ATT1.0060.00----------1.00---------------------------------------
.................................................................................................CTTGGGTCTGATGGGGTAGC........................................................2011.001.001.00-------------------------------------------------
........................CTTGAAAAGCCCAGAgatt..................................................................................................................................19GATT1.000.00-----------------------------------1.00--------------
...............................................................................................CCCTTGGGTCTGATGGGGTAac........................................................22AC1.0010.00-------1.00------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGtttt.....................................................25TTTT1.0058.00------------------------------1.00-------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGtat......................................................24TAT1.0058.00--------------------------------------1.00-----------
...............................................................................................CCCTTGGGTCTGATGGGGT...........................................................1911.001.00---1.00----------------------------------------------
..........................................................TGCCCCATCTGTGCCCTGGGTgag...........................................................................................24GAG1.000.00------------------1.00-------------------------------
..................................................................................................TTGGGTCTGATGGGGTAGCCGt.....................................................22T1.000.00---1.00----------------------------------------------
..................................................................................................TTGGGTCTGATGGGGTAGCttt.....................................................22TTT1.000.00-------------1.00------------------------------------
................................................................................................CCTTGGGTCTGATGGGGTAGC........................................................2111.001.00--1.00-----------------------------------------------
..................................................................................................TTGGGTCTGATGGGGTA..........................................................1711.001.00----1.00---------------------------------------------
..................................................................................................TTGGGTCTGATGGGGTAGCCGAaa...................................................24AA1.001.00------------------------1.00-------------------------
..................................................................................................TTGGGTCTGATGGGGTAGa........................................................19A1.001.00----1.00---------------------------------------------
...........................................................GCCCCATCTGTGCCCTGGGTAGG...........................................................................................2311.001.00----1.00---------------------------------------------
..................................................................................................TTGGGTCTGATGGGGTAGCCGAT....................................................2311.001.00-1.00------------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGtag......................................................24TAG1.0058.00-----------------------1.00--------------------------
..................................................................................................TTGGGTCTGATGGGGTAG.........................................................1811.001.00-1.00------------------------------------------------
......................ATCTTGAAAAGCCCAGAgata..................................................................................................................................21GATA1.000.00------------------------------------------------1.00-
...................................................................................................TGGGTCTGATGGGGTA..........................................................1611.001.00---1.00----------------------------------------------
..........................................................TGCCCCATCTGTGCCCTGGGTAGGAA.........................................................................................2611.001.00-1.00------------------------------------------------
...................................................................................................TGGGTCTGATGGGGTAGa........................................................18A1.000.00-1.00------------------------------------------------
...........................................................GCCCCATCTGTGCCCTGGGTAGGt..........................................................................................24T1.001.00-------------1.00------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGaca......................................................24ACA1.0058.00------------1.00-------------------------------------
..........................................................TGCCCCATCTGTGCCCTGGGTga............................................................................................23GA1.000.00----------------------------1.00---------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGtta......................................................24TTA1.0058.00-------------------------------------1.00------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGttat.....................................................25TTAT1.0058.00------------1.00-------------------------------------
...............................................................................................CCCTTGGGTCTGATGGGGTAGag.......................................................23AG1.0058.00---1.00----------------------------------------------
...................................................................................................TGGGTCTGATGGGGTAGCCGAaa...................................................23AA1.000.00-1.00------------------------------------------------
...............................................................................................CCCTTGGGTCTGATGGG.............................................................1720.500.50----0.50---------------------------------------------
CATATCTAATCAGGGATTCCTCATCTTGAAAAGCCCAGACCTACCTTTGAGCCTCAGTTGCCCCATCTGTGCCCTGGGTAGGAATATCCTGGATCCCCTTGGGTCTGATGGGGTAGCCGATGCCTGATTTGCACCCACAACGTGGGAGGTTATAACCTGTCCCCAAGTTGCAA
..................................................((.(((((((((((...((((.(((((((.....))))....)))..))))..))))))))))).)).....................................................
.....................................................54...................................................................123................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029130(GSM416759)
DLD2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR139172(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR139171(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR038858(GSM458541)
MEL202. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR139174(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR139173(SRX050637)
FLASHPage purified small RNA (~15-40nt) from . (kidney)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR139184(SRX050632)
FLASHPage purified small RNA (~15-40nt) from . (lung)		SRR139178(SRX050638)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR139192(SRX050634)
FLASHPage purified small RNA (~15-40nt) from . (ovary)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR139180(SRX050638)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR139194(SRX050634)
FLASHPage purified small RNA (~15-40nt) from . (ovary)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
...........................................acccTGAGCCTCAGTTGCCC.............................................................................................................. 20accc1.000.00-------1.00------------------------------------------
...................................................................................actgCCTGGATCCCCTTGG....................................................................... 19actg1.000.00--------------------------------------------1.00-----
................................................................................agccTATCCTGGATCCCCT.......................................................................... 19agcc1.000.00---------------------------------1.00----------------