ID: hsa-mir-3118-4
chr15:21038074-21038248 +
Display Libraries
(1)
AGO2.ip 		(8)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(5)
LIVER 		(2)
OTHER 		(1)
OVARY 		(1)
RRP40.ip 		(2)
SKIN 		(1)
SPLEEN 		(1)
UTERUS 		(1)
XRN.ip
Showing top 36 reads
GGACCCCAGCCTGGCCACATCTGCTTACAGGGCACTCTCAGGTGCCCACACATACTACAATAATTTTCATAATGCAATCACACACAATCACCGTGTGACTGCATTATGAAAATTCTTCTAGTGTGATTTACAGCTCTGTCAGGTCAGTTATTTTCTTCTTTATACTTGCTATTTT
..................................................(((((((.((.(((((((((((((((.((((((.........)))))).))))))))))))))).)).)))))))..................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189782SRR029125(GSM416754)
U2OS. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR139202(SRX050636)
FLASHPage purified small RNA (~15-40nt) from . (spleen)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR139164(SRX050631)
FLASHPage purified small RNA (~15-40nt) from . (heart)		SRR139193(SRX050634)
FLASHPage purified small RNA (~15-40nt) from . (ovary)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038856(GSM458539)
D11. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................TGTGACTGCATTATGAAAATTC............................................................22624.3324.339.005.002.670.332.33-0.33--0.330.830.330.500.500.17--0.50---------0.170.33-0.17--------0.17---0.170.170.17--0.17------
.............................................................................................TGTGACTGCATTATGAAAATT.............................................................21610.0010.004.170.17-1.00--1.001.33------0.17--------0.330.33-0.330.17--------0.17-0.17-0.17-0.17---0.170.17-------
.............................................................................................TGTGACTGCATTATGAAAA...............................................................1970.860.86---------------0.430.43--------------------------------------
.............................................................................................TGTGACTGCATTATGAAAATTt............................................................22T0.6710.00-0.170.330.17---------------------------------------------------
............GGCCACATCTGCTTACAGtgct.............................................................................................................................................22TGCT0.500.00--------------------0.50----------------------------------
.............................................................................................TGTGACTGCATTATGAAAAT..............................................................2060.500.50---0.17--------0.17--0.17---------------------------------------
...............................................................................................TGACTGCATTATGAAAATTCTT..........................................................2260.500.500.17------------0.170.17----------------------------------------
.............................................................................................TGTGACTGCATTATGAAAATTCa...........................................................23A0.5024.33--0.33-----------0.17----------------------------------------
.............................................................................................TGTGACTGCATTATGAAAATa.............................................................21A0.330.50---0.33---------------------------------------------------
.............................................................................................TGTGACTGCATTATGAAAATTCg...........................................................23G0.3324.33-----------0.33-------------------------------------------
..............................................................ATTTTCATAATGCAATCACACA...........................................................................................2290.330.33--------0.33----------------------------------------------
.............................................................................................TGTGACTGCATTATGAAAATTCc...........................................................23C0.1724.33-----------------------------------------0.17-------------
.............................................................................................TGTGACTGCATTATGAAAATTa............................................................22A0.1710.00-0.17-----------------------------------------------------
..............................................................................................GTGACTGCATTATGAAAATT.............................................................2060.170.17---0.17---------------------------------------------------
.................................................................................................ACTGCATTATGAAAATTattg.........................................................21ATTG0.170.00--------0.17----------------------------------------------
.............................................................................................TGTGACTGCATTATGAAAATTta...........................................................23TA0.1710.00--0.17----------------------------------------------------
.............................................................................................TGTGACTGCATTATGAAAAgtc............................................................22GTC0.140.86--0.14----------------------------------------------------
GGACCCCAGCCTGGCCACATCTGCTTACAGGGCACTCTCAGGTGCCCACACATACTACAATAATTTTCATAATGCAATCACACACAATCACCGTGTGACTGCATTATGAAAATTCTTCTAGTGTGATTTACAGCTCTGTCAGGTCAGTTATTTTCTTCTTTATACTTGCTATTTT
..................................................(((((((.((.(((((((((((((((.((((((.........)))))).))))))))))))))).)).)))))))..................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189782SRR029125(GSM416754)
U2OS. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR139202(SRX050636)
FLASHPage purified small RNA (~15-40nt) from . (spleen)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR139164(SRX050631)
FLASHPage purified small RNA (~15-40nt) from . (heart)		SRR139193(SRX050634)
FLASHPage purified small RNA (~15-40nt) from . (ovary)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038856(GSM458539)
D11. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
............................................................TAATTTTCATAATGCAATCACA............................................................................................. 2272.432.430.430.14-0.29--0.140.14-0.71------------0.14--------------------------0.140.140.14---
.............................................................AATTTTCATAATGCAATCACA............................................................................................. 21101.201.200.200.20-------------------0.100.10-------0.100.20--------------------0.100.100.10
.....................................................................................ggggACCGTGTGACTGCATTAT.................................................................... 22gggg1.000.00-----1.00-------------------------------------------------
caagCCCAGCCTGGCCACAT........................................................................................................................................................... 20caag0.500.00-----0.50-------------------------------------------------
...........................................................................................CGTGTGACTGCATTATGAAAAT.............................................................. 2220.500.50------------------0.50------------------------------------
.............GCCACATCTGCTTACAGGGCACTCTCAGG..................................................................................................................................... 2920.500.50-------------------0.50-----------------------------------
..............................................................................................GTGACTGCATTATGAAAATTCT........................................................... 2260.330.33--------0.33----------------------------------------------
......................................................................tgacCAATCACACACAATCA..................................................................................... 20tgac0.330.00-------------------------0.33-----------------------------
...............................aaACTCTCAGGTGCCCA............................................................................................................................... 17aa0.330.00---------------------0.33---------------------------------
..............................................................................................GTGACTGCATTATGAAAAT.............................................................. 1960.330.33-----------------------------0.33-------------------------
.............................................................ttaTTTCATAATGCAATCACA............................................................................................. 21tta0.200.00----------------------------------0.20--------------------
..........................................................agTAATTTTCATAATGCAATCA............................................................................................... 22ag0.200.00-----------------------------------0.20-------------------
............................................................taaaTTTCATAATGCAATCACA............................................................................................. 22taaa0.200.00---------------------------------0.20---------------------
............................................................attaTTTCATAATGCAATCACA............................................................................................. 22atta0.200.00--------------------------------0.20----------------------
.............................................................................................TGTGACTGCATTATGAAAAT.............................................................. 2060.170.17-------------------------------------0.17-----------------
...............................................................................................TGACTGCATTATGAAAATTCT........................................................... 2160.170.17----------------------0.17--------------------------------
............................................................................................cTGTGACTGCATTATGAAAAT.............................................................. 21c0.170.17--------0.17----------------------------------------------
...........................................................................................cacGTGACTGCATTATGAAAAT.............................................................. 22cac0.170.33--------0.17----------------------------------------------
..............................................................ATTTTCATAATGCAATCACA............................................................................................. 20100.100.10---0.10---------------------------------------------------
...............................................................TTTTCATAATGCAATCACA............................................................................................. 19100.100.10----------------0.10--------------------------------------