ID: hsa-mir-1231
chr1:201777689-201777880 +
Display Libraries
(1)
AGO1.ip 		(11)
BRAIN 		(1)
BREAST 		(9)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(3)
PLACENTA 		(13)
SKIN 		(1)
XRN.ip
Showing top 55 reads
ACTCTGCCCACCAACTGGATCAGCTTCGGGAGACCATGCACAACATGCAGGTCAGTGTCTGGGCGGACAGCTGCAGGAAAGGGAAGACCAAGGCTTGCTGTCTGTCCAGTCTGCCACCCTACCCTGTCTGTTCTTGCCACAGTTGGAGGTGGACCTGCTGAAAGCAGAGAATGACCGACTGAAGGTAGCCCC
....................................................(((...(((((((((((((.((......((.....))...))..))))))))))))).))).......................................................
..................................................51.................................................................118........................................................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139168(SRX050648)
FLASHPage purified small RNA (~15-40nt) from . (brain)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139170(SRX050649)
FLASHPage purified small RNA (~15-40nt) from . (heart)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139201(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139169(SRX050641)
FLASHPage purified small RNA (~15-40nt) from . (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR139182(SRX050651)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR139200(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR139164(SRX050631)
FLASHPage purified small RNA (~15-40nt) from . (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR139199(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................GTGTCTGGGCGGACAGCTGCA.....................................................................................................................2115.005.00---1.00--1.00--------1.00---------1.00--1.00-------------------
....................................................................................................................................................GTGGACCTGCTGAAAGCAGA........................2012.002.002.00-----------------------------------------------
...............................................................................................................................................TGGAGGTGGACCTGCTGAAAGCAGAG.......................2612.002.00-1.00-1.00--------------------------------------------
.......................................................TGTCTGGGCGGACAGCTGCA.....................................................................................................................2012.002.00--------------2.00---------------------------------
...........................................................................................GGCTTGCTGTCTGTCCAGTCTGC..............................................................................2312.002.00--1.00-----1.00---------------------------------------
....................................................................................................................................................GTGGACCTGCTGAAAGCAG.........................1912.002.00-------------2.00----------------------------------
..................................................GTCAGTGTCTGGGCGGACAGC.........................................................................................................................2112.002.00-------2.00----------------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCACCC.........................................................................2112.002.00------------------------1.00------1.00----------------
..................................................................................................TGTCTGTCCAGTCTGCCAtgt.........................................................................21TGT2.000.00-----------1.00--------------------------1.00---------
..................................................................................................TGTCTGTCCAGTCTGCCACC..........................................................................2012.002.00-------------------1.00--------------------1.00-------
......................................................GTGTCTGGGCGGACAGCTGC......................................................................................................................2012.002.00------1.00--------------------------------1.00--------
..................................................................................................TGTCTGTCCAGTCTGCCgt...........................................................................19GT2.000.00--1.00-1.00-------------------------------------------
..................................................................................................................CACCCTACCCTGTCTGTT............................................................1811.001.00---------------------1.00--------------------------
......................................................GTGTCTGGGCGGACActgc.......................................................................................................................19CTGC1.000.00---------1.00--------------------------------------
......CCCACCAACTGGATCAGCTTCGG...................................................................................................................................................................2311.001.00------------------------------1.00-----------------
......................................................GTGTCTGGGCGGACAGCTG.......................................................................................................................1911.001.00---------------1.00--------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCACCCaa.......................................................................23AA1.002.00--------------------------1.00---------------------
..............................................................................................................................................TTGGAGGTGGACCTGCTGAAAG............................2211.001.001.00-----------------------------------------------
.................................................................................................CTGTCTGTCCAGTCTGCCc............................................................................19C1.000.00-------------------------------------1.00----------
.............................................................GGCGGACAGCTGCAGGAAAGGGAAGACCAAG....................................................................................................3111.001.00------------------1.00-----------------------------
.....................................................AGTGTCTGGGCGGACAGCTGCAG....................................................................................................................2311.001.00----------1.00-------------------------------------
.......................................................................TGCAGGAAAGGGAAGACCAAG....................................................................................................2111.001.00---------------------------1.00--------------------
..................................................................................................TGTCTGTCCAGTCTGCCtgta.........................................................................21TGTA1.000.00-----------1.00------------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCAtcc.........................................................................21TCC1.000.00------------------------------------------1.00-----
.....................................................AGTGTCTGGGCGGACAGCTGCA.....................................................................................................................2211.001.00-----------------------------------------1.00------
...........................................................TGGGCGGACAGCTGCAGG...................................................................................................................1811.001.00-1.00----------------------------------------------
....................................................CAGTGTCTGGGCGGACAGCTGCc.....................................................................................................................23C1.000.00----------1.00-------------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCtggt.........................................................................21TGGT1.000.00----------------1.00-------------------------------
..............................................................................................TTGCTGTCTGTCCAGTCTGt..............................................................................20T1.000.00----1.00-------------------------------------------
......................................................GTGTCTGGGCGGACAGCagca.....................................................................................................................21AGCA1.000.00---------1.00--------------------------------------
.............ACTGGATCAGCTTCGGGAGACCAT...........................................................................................................................................................2411.001.00-----------------1.00------------------------------
.......................................................TGTCTGGGCGGACAGCTGCAaa...................................................................................................................22AA1.002.00---------------------------------1.00--------------
.......................................................TGTCTGGGCGGACAGCTGCAGGAAA................................................................................................................2511.001.00----------------------1.00-------------------------
...............................................................................................................................................TGGAGGTGGACCTGCagg...............................18AGG1.000.00-------------------------------------------1.00----
..................................................................................................TGTCTGTCCAGTCTGCCAgt..........................................................................20GT1.000.00--------------------------------1.00---------------
...............................................................................................TGCTGTCTGTCCAGTCTGCCc............................................................................21C1.000.00-----1.00------------------------------------------
........................................................GTCTGGGCGGACAGCTG.......................................................................................................................1711.001.00---------------------------------------------1.00--
..................................................................................................TGTCTGTCCAGTCTGCCgtcc.........................................................................21GTCC1.000.00--1.00---------------------------------------------
.......................................................TGTCTGGGCGGACAGCTGCAt....................................................................................................................21T1.002.00-----1.00------------------------------------------
...........................................................................................GGCTTGCTGTCTGTCCAGTCTc...............................................................................22C1.000.00------------------------------------1.00-----------
...........................................................................................GGCTTGCTGTCTGTCCAGTgcc...............................................................................22GCC1.000.00----------------1.00-------------------------------
..................................................GTCAGTGTCTGGGCGGACAGa.........................................................................................................................21A1.000.00-1.00----------------------------------------------
......................................................GTGTCTGGGCGGACAGCaa.......................................................................................................................19AA1.000.00--------1.00---------------------------------------
..........................................................CTGGGCGGACAGCTGCA.....................................................................................................................1720.500.50-----------------0.50------------------------------
..................................................................................................................................................AGGTGGACCTGCTGAAggat..........................20GGAT0.170.17----------------------------------------------0.17-
..................................................................................................................................................AGGTGGACCTGCTGAA..............................1660.170.17-----------------------------------------------0.17
ACTCTGCCCACCAACTGGATCAGCTTCGGGAGACCATGCACAACATGCAGGTCAGTGTCTGGGCGGACAGCTGCAGGAAAGGGAAGACCAAGGCTTGCTGTCTGTCCAGTCTGCCACCCTACCCTGTCTGTTCTTGCCACAGTTGGAGGTGGACCTGCTGAAAGCAGAGAATGACCGACTGAAGGTAGCCCC
....................................................(((...(((((((((((((.((......((.....))...))..))))))))))))).))).......................................................
..................................................51.................................................................118........................................................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139168(SRX050648)
FLASHPage purified small RNA (~15-40nt) from . (brain)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139170(SRX050649)
FLASHPage purified small RNA (~15-40nt) from . (heart)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139201(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR139169(SRX050641)
FLASHPage purified small RNA (~15-40nt) from . (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR139182(SRX050651)
FLASHPage purified small RNA (~15-40nt) from . (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR139200(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR139164(SRX050631)
FLASHPage purified small RNA (~15-40nt) from . (heart)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR139199(SRX050639)
FLASHPage purified small RNA (~15-40nt) from . (placenta)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................atAGAGAATGACCGACTG........... 18at1.000.00--------------------------------------------1.00---
.................................tgcTGCACAACATGCAGG............................................................................................................................................. 18tgc1.000.00-----------------------------1.00------------------
...............ctGATCAGCTTCGGGAGA............................................................................................................................................................... 18ct1.000.00-----------------------1.00------------------------
.........................................................................................................CCAGTCTGCCACCCTACCCTGTCTGTTCT.......................................................... 2911.001.00------------1.00-----------------------------------
..................................................................................................................................tggTTGCCACAGTTGGAG............................................ 18tgg1.000.00-----------------------------------1.00------------
..................................................................ctgaCTGCAGGAAAGGGAA........................................................................................................... 19ctga1.000.00--------------------1.00---------------------------
................................................................................................................................................caatGTGGACCTGCTGAAA............................. 19caat1.000.00----------------------------------1.00-------------
......................................................................................................................................................GGACCTGCTGAAAGCAGAGAATGACCGA.............. 2811.001.00------------1.00-----------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCA............................................................................ 1820.500.50---0.50--------------------------------------------
....................................................................AGCTGCAGGAAAGGGA............................................................................................................ 1660.170.17------------------0.17-----------------------------