ID: uc011nbw.1_intron_1_0_chrY_27601766_f.3p
GENE: (2)
chrY:27602685-27602934+


(1)
AGO2.ip
(1)
BRAIN
(9)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
OTHER
(1)
SKIN
(1)
TESTES

Sense strand
GTGCCCATTGTCAGCCACCCACAGTGCTCTCTATCTGAAAGTGACTTTGAAGATTGGCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAGGAGCTGTCCAACAAAGGGAGGTTTTTTTTTTTTTTTTTTTTTTGAGAGTCCAGAGGCCCTTATTGTCTGCTTCCTTTCTCAGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAG
..............................................................................................((((...((((((...(((((((((((((..((......))..))))))))))))).)))))).))))........................................................................................
.............................................................................................94....................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCCCC......................................................................................289.000.00-7.002.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCATC.....................................................................................294.000.00-3.001.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCAGC......................................................................................283.000.00-3.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCACC......................................................................................283.000.00-3.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCTCC.....................................................................................293.000.00-3.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGCC.....................................................................................293.000.00-3.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCTGC......................................................................................282.000.00-2.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCGAG.....................................................................................292.000.00-2.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGGGG....................................................................................302.000.00-2.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTATTC......................................................................................282.000.00-2.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTAGGG........................................................................................262.000.00-1.001.00--------------
.......................................................................................................................................GAGGTTTTTTTTTTTTTTTTTTCCC..........................................................................................251.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTAGTC......................................................................................281.000.00-1.00---------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTTTTAGC........................................................................................301.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTAAGC......................................................................................281.000.00-1.00---------------
............................................................................................GCCAAGTTTGGGAAGCCTGAGAGGAGGAGCTT..............................................................................................................................321.000.00---1.00-------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCTTA......................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTAGCT........................................................................................261.000.00--1.00--------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTGCCT..........................................................................................281.000.00--1.00--------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTCC...............................................................................................231.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGCCT....................................................................................301.000.00-1.00---------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTA.............................................................................................251.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCTTC.....................................................................................291.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCAC......................................................................................281.000.00-1.00---------------
.........................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCGCC.....................................................................................281.000.00-1.00---------------
.........................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCGGC.....................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTATTT......................................................................................281.000.00--------------1.00--
...................................................................................................................................AAGGGAGGTTTTTTTTTTTTTTTTTTTGTT.........................................................................................301.000.00-1.00---------------
.....................................................................................................................................GGGAGGTTTTTTTTTTTTTTTTTCTT...........................................................................................261.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCGGG......................................................................................281.000.00-1.00---------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTTCTC..........................................................................................281.000.00--1.00--------------
.........................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCCGT.....................................................................................281.000.00-1.00---------------
......................................................................................................................................GGAGGTTTTTTTTTTTTTTTTATTG...........................................................................................251.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCTCT......................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTAATG........................................................................................261.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTAGCC........................................................................................261.000.00-1.00---------------
..................................................................................................TTTGGGAAGCCTGAGGCTA.....................................................................................................................................191.000.00------------1.00----
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGCA.....................................................................................291.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTAGCC......................................................................................281.000.00--1.00--------------
...................................................................................................................................AAGGGAGGTTTTTTTTTTTTCCTT...............................................................................................241.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTACCC........................................................................................261.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTATT.........................................................................................251.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGAC.....................................................................................291.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCGC.......................................................................................271.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTATTT........................................................................................261.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCACC.....................................................................................291.000.00-1.00---------------
.....................................................................................................................................GGGAGGTTTTTTTTTTTTTTTTTTCAG..........................................................................................271.000.00-------------1.00---
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCTTG.....................................................................................291.000.00-1.00---------------
....................................................................................................................................AGGGAGGTTTTTTTTTGGGG..................................................................................................201.000.00-----1.00-----------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCGAG......................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGAGGGC...................................................................................311.000.00-1.00---------------
.........................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCTAC.....................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCTC......................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTCATC...........................................................................................231.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGACGG....................................................................................301.000.00-1.00---------------
..............................................................................................................GAGAGGAGGAGCTGTAGC..........................................................................................................................181.000.00----------1.00------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGGTG....................................................................................301.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTCGGA...........................................................................................231.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGATTGG...................................................................................311.000.00--1.00--------------
......................................................................................................................................GGAGGTTTTTTTTTTTTATGT...............................................................................................211.000.00------1.00----------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTCGAA...........................................................................................231.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCAC.......................................................................................271.000.00-1.00---------------
...................................................................................................................................AAGGGAGGTTTTTTTTTTTTCTC................................................................................................231.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCGAT.....................................................................................291.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTGGGAC....................................................................................301.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCGGA......................................................................................281.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCATT.....................................................................................291.000.00-1.00---------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTTCGG......................................................................................281.000.00-1.00---------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTTTTGT.........................................................................................291.000.00--1.00--------------
........................................................................................................................................AGGTTTTTTTTTTTTTTTTTTTTTCCCG......................................................................................281.000.00-1.00---------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTTT............................................................................................2670.140.14--0.14--------------
....................................................................................................................................AGGGAGGTTTTTTTTTTTTTTTTTTTCTT.........................................................................................2970.140.14--0.14--------------

Antisense strand
GTGCCCATTGTCAGCCACCCACAGTGCTCTCTATCTGAAAGTGACTTTGAAGATTGGCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGAGGCCAAGTTTGGGAAGCCTGAGAGGAGGAGCTGTCCAACAAAGGGAGGTTTTTTTTTTTTTTTTTTTTTTGAGAGTCCAGAGGCCCTTATTGTCTGCTTCCTTTCTCAGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAG
..............................................................................................((((...((((((...(((((((((((((..((......))..))))))))))))).)))))).))))........................................................................................
.............................................................................................94....................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACGGT......................................... 3259.000.0059.00----------------
...........CAGCCACCCACAGTGCTCTCTATCTGAAAT................................................................................................................................................................................................................. 3027.000.0027.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGACGGT.......................................... 319.000.009.00----------------
...........CAGCCACCCACAGTGCTCTCTATCTGAAT.................................................................................................................................................................................................................. 293.000.003.00----------------
..........TCAGCCACCCACAGTGCTCTCTATCTGATG.................................................................................................................................................................................................................. 302.000.002.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACGGA......................................... 322.000.002.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACGAC......................................... 322.000.002.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGACGGA.......................................... 312.000.002.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACGT.......................................... 312.000.002.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGATGGC.......................................... 312.000.002.00----------------
............AGCCACCCACAGTGCTCTCTTAC....................................................................................................................................................................................................................... 231.000.00--1.00--------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACGTT......................................... 321.000.001.00----------------
............AGCCACCCACAGTGCTCTCTATCTGAAACT................................................................................................................................................................................................................ 301.000.001.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACTGC......................................... 321.000.001.00----------------
..........................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGAGAGGTC................................................................................. 311.000.001.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGACGCC.......................................... 311.000.001.00----------------
........................................................................GAGGAGTCATTAGCAGTGC............................................................................................................................................................... 191.000.00---------1.00-------
............................................................................................................................................................................................................ACCCCTGGCCCCAGAGCCCCCAGCAGGGCC................ 301.000.00-1.00---------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGCGGT........................................... 301.000.001.00----------------
..........TCAGCCACCCACAGTGCTCTCTATCTGAAT.................................................................................................................................................................................................................. 301.000.001.00----------------
...........CAGCCACCCACAGTGCTCTCTATCT...................................................................................................................................................................................................................... 251.000.001.00----------------
.........GTCAGCCACCCACAGTGCTCTCTATCTGAT................................................................................................................................................................................................................... 301.000.001.00----------------
.......................................................................................................................................AAAAAAAAAAAAAAAAAAAACCTC........................................................................................... 2401.001.00--------1.00--------
..............................................................................................................GAGAGGAGGAGCTGTCCTC......................................................................................................................... 191.000.00-1.00---------------
............AGCCACCCACAGTGCTCTCTATCTGAAAT................................................................................................................................................................................................................. 291.000.001.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACAAC......................................... 321.000.001.00----------------
...........................................................................................................................................................................................................................GCCCCCAGCAGGGCCGG.............. 171.000.00-------1.00---------
..........................................................................................................................................................................................GCTTCCTTTCTCAGCTGTGCC........................................... 211.000.001.00----------------
............AGCCACCCACAGTGCTCTCTATCTGAAATT................................................................................................................................................................................................................ 301.000.001.00----------------
.................................................................................................................................................................................TTATTGTCTGCTTCCTTTCTCAGCTGAACGGG......................................... 321.000.001.00----------------
...............................................................................................................................................................................CCTTATTGTCTGCTTCCTTTCTCAGCTGAAC............................................ 311.000.001.00----------------
..........................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGGCCG.................................................................................... 281.000.00----1.00------------
.................................................................................................................................................ACTCTCAAAAAAAAAAAAAAAA................................................................................... 2201.001.00-----------1.00-----
..................................................................................................................................AAAAAAAAAAAAAAAAACCTCCCTTT.............................................................................................. 2630.330.33---------------0.33-
...................................................................................................................................................................AGCAGACAATAAGGGCCTCTGGACTC............................................................. 2640.250.250.25----------------
.................................................................................................................................AAAAAACCTCCCTTTG......................................................................................................... 1690.110.11----------------0.11