ID: uc011mye.1_intron_0_0_chrX_151124600_r.3p
GENE: GABRE(8)
chrX:151124550-151124799-


(1)
AGO3.ip
(1)
B-CELL
(1)
BREAST
(5)
CELL-LINE
(2)
CERVIX
(8)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(1)
RRP40.ip
(25)
SKIN
(1)
TESTES

Sense strand
TGTGCTTCTCCACCACAGCACAGACTTCCCTAGTCTCATTTGCTGAGAGTAGACATTCTGAGGGCCAGCAGTGCAGGTGTGATGTGCCTCAGAGGGTATGAAGCCCTTAGTCAGCCATCTGGATATCAGCTGCGTGGGCATGATATCTAGAAGGCTAATTGATTTTTTCACTTTCACCTGACTCTCTTGCCAACCTGCAGAGACAGACATTGGGTGTAGGACAGTGAACTGAGAAGGAAGCTATTAAGAT
..............................................................................((((.........((((((.....))))))....((((.((((((((((((((.....))).))))))))))).))))...........))))...............................................................................
.............................................................................78.............................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................AAGGCTAATTGATTTTGAC.................................................................................1958.000.0010.007.005.002.002.004.002.002.003.003.002.002.003.001.00-2.00--2.001.001.001.001.00---------1.00---1.00--------------
......................................................................................................................................................AAGGCTAATTGATTTTGACC................................................................................2025.000.003.002.003.002.003.00-2.002.001.00-------2.00--1.00-1.00-----1.001.00--------------1.00-------
.......................................................................................................................................................AGGCTAATTGATTTTGACC................................................................................1913.000.002.00--1.001.001.001.001.00-1.002.002.00-----------1.00---------------------------
......................................................................................................................................................AAGGCTAATTGATTTTGA..................................................................................182.000.001.00-------------------1.00------------------------------
.............................................................................................................................................................................................................................CAGTGAACTGAGAAGGAAG..........1912.002.00--------------2.00------------------------------------
.......................................................................................................................................................................................................................................AGAAGGAAGCTATTATGCC191.000.00--------------------------------------1.00------------
......................................................................................................................................................................................................................TGTAGGACAGTGAACTGAGAAGG.............2311.001.00--------------------------------------------1.00------
...................................................................................................................................................................TTTTTCACTTTCACCGTTT....................................................................191.000.00-----------------------------------1.00---------------
......................................................................................................................................................................................................................TGTAGGACAGTGAACTTTG.................191.000.00-----------------------------1.00---------------------
...................................................................................................................................................................................................TGCAGAGACAGACATTGGGTGTAGGAC............................2711.001.00----------------------------------1.00----------------
......................................................................................................................................................................................................................TGTAGGACAGTGAACTGAGAAGGA............2411.001.00-------------------------------1.00-------------------
..................................................................................TGTGCCTCAGAGGGTGAAA.....................................................................................................................................................191.000.00-----------------1.00---------------------------------
.....................................................................................................................................................................................................CAGAGACAGACATTGGGTGTAGGACAGTG........................2911.001.00----------------------1.00----------------------------
.......................................................................................................................................................................................................................GTAGGACAGTGAACTCTG.................181.000.00-----1.00---------------------------------------------
........................................................................................................................................................................................................................TAGGACAGTGAACTGAGAAGGAAGCT........2611.001.00---------------------------------1.00-----------------
......................................................................................................................................................AAGGCTAATTGATTTTCACC................................................................................201.000.00---1.00-----------------------------------------------
...............................................AGTAGACATTCTGAGGGCCAGCAGTGCA...............................................................................................................................................................................2811.001.00-------------1.00-------------------------------------
.......................................................................................................................TGGATATCAGCTGCGTGGGCAT.............................................................................................................2211.001.00-------------------------------------1.00-------------
......................................................................................................................................................AAGGCTAATTGATTTTTGGC................................................................................201.000.00----------------------------------------1.00----------
............................................................................................................................................................................................GCCAACCTGCAGAGAGGAG...........................................191.000.00-------------------------------------------------1.00-
..................................................................................................................................................................................................................TGGGTGTAGGACAGTGAAC.....................1911.001.00-------------------------1.00-------------------------
....................................................ACATTCTGAGGGCCAGCAGTG.................................................................................................................................................................................2111.001.00-----------------------------------------------1.00---
................................................GTAGACATTCTGAGGGCC........................................................................................................................................................................................1811.001.00------------------------------------------------1.00--
..................................................................................................................CCATCTGGATATCAGCCG......................................................................................................................181.000.00---------------------------------------1.00-----------
..........................................................................................................................................................................................................ACAGACATTGGGTGTAGGACAGTG........................2411.001.00-------------1.00-------------------------------------
.......................................................................................................................................................................................................GAGACAGACATTGGGTGC.................................181.000.00------------------------------------------1.00--------
.....................................................................................................................................GTGGGCATGATATCTAGAAGGCTAA............................................................................................2511.001.00---------------------------------------------1.00-----
....................................................................................................................................CGTGGGCATGATATCTAGAAGGCTA.............................................................................................2511.001.00-----------------------------------------1.00---------
.............................................................GGGCCAGCAGTGCAGGTGTGA........................................................................................................................................................................2111.001.00------------------------1.00--------------------------
......................................................................................................................................................AAGGCTAATTGATTTTGCCC................................................................................201.000.00---1.00-----------------------------------------------
.............................................................................................................................................................ATTGATTTTTTCACTTT............................................................................1760.170.17--------------------------------------------------0.17

Antisense strand
TGTGCTTCTCCACCACAGCACAGACTTCCCTAGTCTCATTTGCTGAGAGTAGACATTCTGAGGGCCAGCAGTGCAGGTGTGATGTGCCTCAGAGGGTATGAAGCCCTTAGTCAGCCATCTGGATATCAGCTGCGTGGGCATGATATCTAGAAGGCTAATTGATTTTTTCACTTTCACCTGACTCTCTTGCCAACCTGCAGAGACAGACATTGGGTGTAGGACAGTGAACTGAGAAGGAAGCTATTAAGAT
..............................................................................((((.........((((((.....))))))....((((.((((((((((((((.....))).))))))))))).))))...........))))...............................................................................
.............................................................................78.............................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................GTGCAGGTGTGATGTACG.................................................................................................................................................................. 181.000.00-----------------1.00---------------------------------
.....................................................................AGTGCAGGTGTGATGTCCAG................................................................................................................................................................. 201.000.00--------------------------1.00------------------------
.........................TTCCCTAGTCTCATTTGC............................................................................................................................................................................................................... 181.000.00------------------------------1.00--------------------