ID: uc011msx.1_intron_10_0_chrX_110963399_f.5p
GENE: (11)
chrX:110963349-110963598+


(1)
B-CELL 		(8)
BRAIN 		(4)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(1)
LIVER 		(4)
OTHER 		(1)
XRN.ip

Sense strand
ATGCTGAAAATATACCAGAGGGCTACAATAAAGGAACAGAAGAAACAAAGGTTTGATATTTTCTAAGGCAAAGAATTTTCATAGTCTTGGCTTGCAGCATCATGACTTAAACTAGTTAAAGTCAGATATTATATTCTAGTTATATGGGTTGAGGGAGGAGTTGGTCATTTTCCTTTGTGAAAGTCTTACCTATCTTTAAACTTCAAATGCATACTTAATGTTCTTTGAATTCTTATTTTTACAGAATTTT
.....................................................................................................((((((..((((..((....((((...((((((.......)))))).))))..))..))))))))))..................................................................................
....................................................................................................101.....................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................................................TGAGGGAGGAGTTGGTACAG.................................................................................2018.000.0017.00---------1.00-------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGATAG..................................................................................1916.000.0015.00----------------1.00------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTAGAG.................................................................................204.000.004.00-----------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTATAG.................................................................................203.000.001.00--1.00--1.00-----------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTGTTG.................................................................................202.000.00---1.00----------1.00---------------
.....................................................................................................................................................TGAGGGAGGAGTTGGATA...................................................................................182.000.001.00------------1.00----------------
........................ACAATAAAGGAACAGAAGAAACA...........................................................................................................................................................................................................2312.002.00----2.00-------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTACA..................................................................................192.000.00---------1.00-1.00------------------
.......................TACAATAAAGGAACAGAAGAAACAAAG........................................................................................................................................................................................................2712.002.00-------2.00----------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTATTG.................................................................................202.000.00---1.00--------------------1.00-----
.....................................................................................................................................................TGAGGGAGGAGTTGGTATA..................................................................................192.000.001.00--------------1.00--------------
.....................................................................................................................................................TGAGGGAGGAGTTGGATAA..................................................................................192.000.002.00-----------------------------
.......................TACAATAAAGGAACAGAAGAAACA...........................................................................................................................................................................................................2412.002.00------------1.00------------1.00----
.....................................................................................................................................................TGAGGGAGGAGTTGGACA...................................................................................182.000.002.00-----------------------------
.........ATATACCAGAGGGCTACAAAAGG..........................................................................................................................................................................................................................232.000.00-2.00----------------------------
.........................................................................................................CTTAAACTAGTTAAAAATA..............................................................................................................................191.000.001.00-----------------------------
.................GAGGGCTACAATAAAGGAACAGAAGAA..............................................................................................................................................................................................................2711.001.00--------1.00---------------------
............................TAAAGGAACAGAAGAAACAAAG........................................................................................................................................................................................................2211.001.00-----------------------1.00------
................AGAGGGCTACAATAAAGGAACAGAAGAA..............................................................................................................................................................................................................2811.001.00--------------------------1.00---
............................................................................................................................................................................................................AAATGCATACTTAATGTCCT..........................201.000.00-----------------------------1.00
.....................................................................................................................................................TGAGGGAGGAGTTGGTCTTGT................................................................................211.000.00----------------------------1.00-
.................................................................................................................................................GGGTTGAGGGAGGAGTTGGTC....................................................................................2111.001.00-------------------1.00----------
..................................................................................AGTCTTGGCTTGCAGCATCATGAC................................................................................................................................................2411.001.00--1.00---------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGACC...................................................................................181.000.00------------------1.00-----------
.....................................................................................................................................................TGAGGGAGGAGTTGGTCCAGT................................................................................211.000.00------------1.00-----------------
................................GGAACAGAAGAAACAAAGTCT.....................................................................................................................................................................................................211.000.00-----1.00------------------------
..........................................................................ATTTTCATAGTCTTGGCTTGCAGCATC.....................................................................................................................................................2711.001.00-1.00----------------------------
..............................................................................................................................................TATGGGTTGAGGGAGGAGTTGGCC....................................................................................241.000.00-1.00----------------------------
...................................................................GCAAAGAATTTTCATTGGG....................................................................................................................................................................191.000.001.00-----------------------------
....................................................................................................................................................TTGAGGGAGGAGTTGGTGTTG.................................................................................211.000.00------1.00-----------------------
...............CAGAGGGCTACAATAAAGGAAC.....................................................................................................................................................................................................................2211.001.00----------------------1.00-------
.....................................................................................................................................................TGAGGGAGGAGTTGGACAG..................................................................................191.000.001.00-----------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTATGG.................................................................................201.000.00---------1.00--------------------
....................................................................................................................................................TTGAGGGAGGAGTTGTATG...................................................................................191.000.001.00-----------------------------
.............................................................................................................................................ATATGGGTTGAGGGAGGAGTCGG......................................................................................231.000.00--1.00---------------------------
................AGAGGGCTACAATAAAGGAACAGAAGAAA.............................................................................................................................................................................................................2911.001.00-1.00----------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTTTGT.................................................................................201.000.00-----------1.00------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTAAAG.................................................................................201.000.00--------------------1.00---------
.....................................................................................................................................................TGAGGGAGGAGTTGGTGC...................................................................................181.000.00----------------1.00-------------
.......................TACAATAAAGGAACAGAAGAAA.............................................................................................................................................................................................................2211.001.00---------------------1.00--------
.....................................................................................................................................................TGAGGGAGGAGTTGGTCAAG.................................................................................201.000.001.00-----------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGTCCGCC................................................................................211.000.00----------1.00-------------------
...............................................................................................................................................ATGGGTTGAGGGAGGAGGCGG......................................................................................211.000.00--1.00---------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGACGA..................................................................................191.000.001.00-----------------------------
.....................................................................................................................................................TGAGGGAGGAGTTGGATTG..................................................................................191.000.001.00-----------------------------
...................................................................................................................................................................................................................................AATTCTTATTTTTACGGA.....181.000.00---------------------------1.00--
..........................AATAAAGGAACAGAAGAAACAA..........................................................................................................................................................................................................2211.001.00--------1.00---------------------
...........................ATAAAGGAACAGAAGAAACAAAGTCT.....................................................................................................................................................................................................261.000.00-----1.00------------------------
.............................AAAGGAACAGAAGAAACA...........................................................................................................................................................................................................1880.120.12----0.12-------------------------

Antisense strand
ATGCTGAAAATATACCAGAGGGCTACAATAAAGGAACAGAAGAAACAAAGGTTTGATATTTTCTAAGGCAAAGAATTTTCATAGTCTTGGCTTGCAGCATCATGACTTAAACTAGTTAAAGTCAGATATTATATTCTAGTTATATGGGTTGAGGGAGGAGTTGGTCATTTTCCTTTGTGAAAGTCTTACCTATCTTTAAACTTCAAATGCATACTTAATGTTCTTTGAATTCTTATTTTTACAGAATTTT
.....................................................................................................((((((..((((..((....((((...((((((.......)))))).))))..))..))))))))))..................................................................................
....................................................................................................101.....................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................................................................TGCATACTTAATGTTCTCAA....................... 201.000.001.00-----------------------------