ID: uc011mpk.1_intron_11_0_chrX_69649914_f.3p
GENE: (12)
chrX:69650624-69650873+


(1)
B-CELL
(1)
BREAST
(12)
CELL-LINE
(1)
HEART
(1)
OTHER

Sense strand
CATATTTCTTTTTTTAATTTGAATTTTAATTAAAAAAATTTTTTTTAGAGATAGAGTCTCACTCTGTCACCAAGCCTGTAGTGCAGTGGCCTGATCAGAGCTCACTGCAGCTTTGAACTCCTGGGCTCAAGTGATCCTGAGTAGCTAGGACTATAGGCACACACCACTATGCAAGGCTATTTTTTTTTTTTTTTTTTTAGAGACAGGTTCCTACTACCTGCCCAGGCTGGTCTCAAACTACTGGCCTCAA
..........................................................................................................................................((((((((.....(((((..........)))))...))))))))....................................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR038853(GSM458536)
MELB. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTAG..................................................244.000.00---3.001.00------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATT.................................................253.000.00--2.00---1.00----------
.................................................................................................................TGAACTCCTGGGCTCAAGTGATCCCGCC.............................................................................................................282.000.00-2.00---------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCTTT.................................................252.000.00--1.001.00-------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTTTCTC.................................................282.000.002.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTAAAAG...............................................272.000.00--1.00-1.00------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCCC...................................................232.000.002.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCTAG.................................................252.000.00---2.00-------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAAATG...............................................262.000.00-----1.001.00----------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTC.....................................................242.000.002.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTTGCGA.................................................281.000.001.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTCCCT..................................................271.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTTA..................................................241.000.00--1.00--------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTCCGC..................................................271.000.001.00----------------
...........................................................................................................................................AGTAGCTAGGACTATAGG.............................................................................................1801.001.00----------1.00------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATG.................................................251.000.00------1.00----------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTTTATTG................................................291.000.00-1.00---------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTCC.......................................................221.000.001.00----------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGAAGGG.............................................271.000.001.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTCTAC..................................................271.000.001.00----------------
......................................................................................................CACTGCAGCTTTGAACTTTG................................................................................................................................201.000.00-----------1.00-----
..............................................................................................................................................................................GGCTATTTTTTTTTTTTTTTTTGCCG..................................................261.000.001.00----------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAATCG...............................................261.000.00---1.00-------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCCCC.................................................251.000.001.00----------------
...ATTTCTTTTTTTAATTTGCAG..................................................................................................................................................................................................................................211.000.00-----1.00-----------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAAAGC...............................................261.000.001.00----------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTACGTG...............................................261.000.00--1.00--------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAAAAA...............................................261.000.00--1.00--------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTCCTG....................................................251.000.001.00----------------
...........................................................................................................CAGCTTTGAACTCCTGGGCTGAC........................................................................................................................231.000.00---------------1.00-
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTAATTG...............................................271.000.00--1.00--------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGAAGG..............................................261.000.00-1.00---------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATTAG...............................................271.000.00--1.00--------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTAACAA...............................................271.000.00----1.00------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGATAAA.............................................271.000.00-----1.00-----------
............................................................................................................................................................................AAGGCTATTTTTTTTTTTTTTTTTGAG...................................................271.000.001.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTCTTT....................................................251.000.00-1.00---------------
.............................................................................................ATCAGAGCTCACTGC..............................................................................................................................................1501.001.00-------------1.00---
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTCTG...................................................261.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTACCTG...............................................271.000.00--1.00--------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATTT................................................261.000.00--1.00--------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATTG................................................261.000.00--1.00--------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTGCTG..................................................271.000.001.00----------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAGAGCGTT............................................291.000.00----1.00------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTCTTC....................................................251.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCAAG..................................................241.000.00----1.00------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAGTTTG..............................................271.000.00-1.00---------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTTCG...................................................261.000.00-1.00---------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTTTCTTG................................................291.000.001.00----------------
.....TTCTTTTTTTAATTTGAGC..................................................................................................................................................................................................................................191.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCAGG..................................................241.000.001.00----------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTAGAGACACCTT.........................................301.000.001.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTCTG....................................................251.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATAT................................................261.000.00------1.00----------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTCTG.......................................................221.000.001.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTCTTG..................................................271.000.001.00----------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGAGTG..............................................261.000.00-----1.00-----------
................................................................................................................................................................................................TTTTTTAGAGACAGGTTCCCAC....................................221.000.00-1.00---------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTCTGC....................................................251.000.001.00----------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGAGGAG.............................................271.000.00-1.00---------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCCCG.................................................251.000.00--1.00--------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTCGAG........................................................211.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTAACAT...............................................271.000.00----1.00------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGAGGGG.............................................271.000.00-1.00---------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTAAAAC...............................................271.000.00------1.00----------
.................................................................................................................................................................................................................CCTACTACCTGCCCACGCT......................191.000.00-------1.00---------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTAAC.......................................................221.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATTTG...............................................271.000.00--1.00--------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTCG..........................................................191.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTATAG................................................261.000.00--1.00--------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTCGGC...................................................261.000.001.00----------------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTGCTC......................................................231.000.00-1.00---------------
..................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTAGAGACGGG...........................................291.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTAATC................................................261.000.00--1.00--------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCTTG.................................................251.000.00---1.00-------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTAAAGG...............................................261.000.001.00----------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTAGAGACAGTCC.........................................261.000.00-1.00---------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTTC..................................................241.000.00-----1.00-----------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTAGAGCGG.............................................261.000.00-1.00---------------
...ATTTCTTTTTTTAATCG......................................................................................................................................................................................................................................171.000.00---1.00-------------
............TTTAATTTGAATTTTATCCA..........................................................................................................................................................................................................................201.000.00---------1.00-------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTCC..................................................241.000.00-----1.00-----------
.......................................................................................................................................................................................................................................CTCAAACTACTGGCCTCCAGC211.000.00--------1.00--------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTCGC....................................................251.000.001.00----------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCCGG..................................................241.000.00------1.00----------
...........................................................................................................................................................................CAAGGCTATTTTTTTTTTTTTTTTTT.....................................................2620.500.50----0.50------------
...................................................................................................................AACTCCTGGGCTCAAGTGATCCTGAG.............................................................................................................2620.500.500.50----------------
..........................................................................................CTGATCAGAGCTCACTGC..............................................................................................................................................1860.170.17----------------0.17

Antisense strand
CATATTTCTTTTTTTAATTTGAATTTTAATTAAAAAAATTTTTTTTAGAGATAGAGTCTCACTCTGTCACCAAGCCTGTAGTGCAGTGGCCTGATCAGAGCTCACTGCAGCTTTGAACTCCTGGGCTCAAGTGATCCTGAGTAGCTAGGACTATAGGCACACACCACTATGCAAGGCTATTTTTTTTTTTTTTTTTTTAGAGACAGGTTCCTACTACCTGCCCAGGCTGGTCTCAAACTACTGGCCTCAA
..........................................................................................................................................((((((((.....(((((..........)))))...))))))))....................................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR038853(GSM458536)
MELB. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................AAAAAATTTTTTTTAGAGCTT..................................................................................................................................................................................................... 211.000.00-----1.00-----------
.............................................................................................................................................................................AGGCTATTTTTTTTTTTTTTTTTTCCTC................................................. 281.000.00--------------1.00--
..............................................................................................TCAGAGCTCACTGCAGCTTTGAACTCC................................................................................................................................. 271.000.00-1.00---------------
................................................................................................................................................................................................................................GGCTGGTCTCAAACTACTGGGC.... 221.000.001.00----------------
................................................................................................................................................................................................................................GGCTGGTCTCAAACTACTGGCCTGGGC 271.000.001.00----------------
........................................................................................................................................................................................................................CCTGCCCAGGCTGGTCTGAG.............. 201.000.00-1.00---------------
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAAATAGC.................................................... 2301.001.00------------1.00----
........................................................................................................................................................................................................................CCTGCCCAGGCTGGTCTCAAAGAA.......... 241.000.001.00----------------
........................................TTTTTTAGAGATAGAGTCTCACTCTGTCATAAG................................................................................................................................................................................. 331.000.00----1.00------------
.................................................GATAGAGTCTCACTCTGTCACAGA................................................................................................................................................................................. 241.000.00-1.00---------------
........................................................................................................................................................................................................................TAGTTTGAGACCAGCCTGGGCAGG.......... 2430.330.33-0.33---------------