ID: uc011mod.1_intron_22_0_chrX_53247149_r.3p
GENE: (1)
chrX:53247099-53247348-


(5)
B-CELL 		(8)
BREAST 		(15)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(7)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CACAGCTTGGTAGCACACAAGCTGTCATCAGAACATCTTGGAATCTTTTGCTGCAATTTGAGGTTGGGATAAGGGGATAGCCCCCAGTGAAGTGAGGGACTAGAGTTGCCCTCATTGCCCTTTTGCCCTTTCTACAGGCCTACTCCCTCACATATAAATACACGTGGCACATCCATGTCTTTTCCTACTTGTTTTTTCAGATTGTGGTGGAGGAAGGTGGTTATGAAGCTATCTGCAAGGACCGTCGGTG
..........................................................(((((..(((....((((.....)))).....((((((((((....))..)))))))).)))....(((.........)))......)))))....................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189782SRR189783SRR189787SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................TTTCTACAGGCCTACGATC.......................................................................................................192116.001.0028.0020.0016.0015.0010.003.001.002.005.002.00-4.002.00--1.00--1.00---1.00--2.00----1.00-----------1.00-------1.00-----
................................................................................................................................TTTCTACAGGCCTACTATC.......................................................................................................1936.000.0019.007.00-1.001.00-4.001.002.00------------1.00----------------------------------
................................................................................................................................TTTCTACAGGCCTACGGTC.......................................................................................................19229.001.004.006.008.007.002.00--1.00-1.00----------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGATT.......................................................................................................19222.001.0010.002.004.002.002.002.00--------------------------------------------------
....................................................GCAATTTGAGGTTGGGAT....................................................................................................................................................................................18112.0012.00----------7.00---5.00-----------------------------------------
................................................................................................................................TTTCTACAGGCCTACTGTC.......................................................................................................1911.000.003.00-4.002.00---1.00----1.00-------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGACC.......................................................................................................19210.001.00-3.003.001.002.00------------------1.00--------------------------------
................................................................................................................................TTTCTACAGGCCTACGGTT.......................................................................................................1929.001.00--3.002.00-----2.00--2.00-------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTGTT.......................................................................................................198.000.003.00-2.001.00-----1.00-----1.00----------------------------------------
................................................................................................................................TTTCTACAGGCCTACGAGC.......................................................................................................1927.001.001.002.00-1.00-1.00-2.00------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTATT.......................................................................................................197.000.006.00------1.00------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGTTC.......................................................................................................1927.001.001.002.001.001.001.00--------------------------------------------1.00------
.................................................................................................................................TTCTACAGGCCTACTATC.......................................................................................................185.000.00-----1.00-1.00----------1.00---1.00----------------------------1.00----
................................................................................................................................TTTCTACAGGCCTACGCTC.......................................................................................................1925.001.001.001.001.00-2.00---------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACCATC.......................................................................................................1925.001.00-1.00---3.00-----1.00--------------------------------------------
................................................................................................................................TTTCTACAGGCCTACAATC.......................................................................................................1924.001.00-3.00--1.00---------------------------------------------------
...........................................................................................................................................................................................................GTGGTGGAGGAAGGTGGTTA...........................2013.003.00-----------------1.00---------2.00----------------------------
..........................................................................................................................................................................................................TGTGGTGGAGGAAGGTGGTT............................2013.003.00-------------1.00------2.00-----------------------------------
................................................................................................................................TTTCTACAGGCCTACGCGC.......................................................................................................1923.001.00-3.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGGCC.......................................................................................................1923.001.00--1.002.00----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGACT.......................................................................................................1923.001.001.00-1.001.00----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGGCT.......................................................................................................1923.001.00---3.00----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTACC.......................................................................................................193.000.001.00-1.001.00----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGATA.......................................................................................................1923.001.002.00-1.00-----------------------------------------------------
..............................................................................................................................................................................................................GTGGAGGAAGGTGGTTATG.........................1912.002.00-------------------1.00----1.00-------------------------------
................................................................................................................................TTTCTACAGGCCTACGTTT.......................................................................................................1922.001.00---------1.00--1.00-------------------------------------------
..................................................................................................................................TCTACAGGCCTACTCTC.......................................................................................................172.000.00--------1.00--------------1.00--------------------------------
................................................................................................................................TTTCTACAGGCCTACTACT.......................................................................................................192.000.00--1.00---1.00-------------------------------------------------
...............................................................................................................................................................................................................TGGAGGAAGGTGGTTATG.........................1812.002.00-------------------------------------------1.00--1.00---------
................................................................................................................................TTTCTACAGGCCTACAATA.......................................................................................................1922.001.001.001.00------------------------------------------------------
........................................................................................................................................................................................................ATTGTGGTGGAGGAAGGTGG..............................2012.002.00-------------2.00------------------------------------------
................................................................................................................................TTTCTACAGGCCTACCATT.......................................................................................................1922.001.00-----1.00-----1.00--------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGAAC.......................................................................................................1922.001.00----1.001.00--------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACAAGC.......................................................................................................1922.001.00-2.00------------------------------------------------------
...............................................................................................................................................................................................................................TGAAGCTATCTGCAAGGA.........1812.002.00----------------2.00---------------------------------------
................................................................................................................................TTTCTACAGGCCTACGGGC.......................................................................................................1921.001.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTGCT.......................................................................................................191.000.00------1.00-------------------------------------------------
............................................................................................TGAGGGACTAGAGTTTTTG...........................................................................................................................................191.000.00-1.00------------------------------------------------------
.....................................................................................................................................................................................................................................TATCTGCAAGGACCGTCGGT.2011.001.00------------------------------------1.00-------------------
................................................................................................................................TTTCTACAGGCCTACTTTCT......................................................................................................201.000.00-1.00------------------------------------------------------
.................................................................................................................................TTCTACAGGCCTACTGATT......................................................................................................191.000.00------1.00-------------------------------------------------
.................................................................................................................................................................................................TTTTCAGATTGTGGTGG........................................1711.001.00---------------------------------1.00----------------------
................................................................................................................................TTTCTACAGGCCTACTATG.......................................................................................................191.000.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGCTA.......................................................................................................1921.001.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGTTG.......................................................................................................1921.001.00---1.00----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGAT........................................................................................................1821.001.00------1.00-------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTA.........................................................................................................171.000.00-1.00------------------------------------------------------
.......................................................ATTTGAGGTTGGGATTGC.................................................................................................................................................................................181.000.00----------------------------------1.00---------------------
............................................................................................................................................................................................................TGGTGGAGGAAGGTGGTTATGAAG......................2411.001.00-------------------1.00------------------------------------
.........................................................................................................................................................................................................TTGTGGTGGAGGAAGGTGGTG............................211.000.00-------------1.00------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTCTG.......................................................................................................191.000.001.00-------------------------------------------------------
........................................................................................GAAGTGAGGGACTAGAGT................................................................................................................................................1811.001.00-----------------------------------------------1.00--------
...............................................................................................................................................................................................................................TGAAGCTATCTGCAAGGACCGT.....2211.001.00----------------------------------------------------1.00---
................................................................................................................................TTTCTACAGGCCTACTTTT.......................................................................................................191.000.00-------1.00------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACACTC.......................................................................................................1921.001.00--1.00-----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGGTA.......................................................................................................1921.001.001.00-------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTTTC.......................................................................................................191.000.001.00-------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTAC...........................................................................................................1521.001.00---1.00----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTATTT......................................................................................................201.000.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTAAC.......................................................................................................191.000.00-1.00------------------------------------------------------
.............................................................................................................................................................................................................................TATGAAGCTATCTGCAAGGACCGTCGGT.2811.001.00----------------------------1.00---------------------------
......................................................................................................................................................................................................................................ATCTGCAAGGACCGTCGGTGGGGT241.000.00---------------------------------------------1.00----------
...............................................................................................................................CTTTCTACAGGCCTACTCTCC......................................................................................................211.000.00-1.00------------------------------------------------------
.........................................................................................................................................................................................................TTGTGGTGGAGGAAGGTGGTTA...........................2211.001.00--------------------------1.00-----------------------------
................................................................................................................................TTTCTACAGGCCTACGCCC.......................................................................................................1921.001.00--1.00-----------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACGAGA.......................................................................................................1921.001.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACCACC.......................................................................................................1921.001.00----1.00---------------------------------------------------
....................................................................................................................................TACAGGCCTACTCCCGCA....................................................................................................181.000.00--------1.00-----------------------------------------------
.................................................................................................................................TTCTACAGGCCTACTGGC.......................................................................................................181.000.00-------------------------------1.00------------------------
................................................................................................................................................................................................................GGAGGAAGGTGGTTATTAC.......................191.000.001.00-------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTAT........................................................................................................181.000.00------1.00-------------------------------------------------
..............................................................................................................................................................................................................................ATGAAGCTATCTGCAAGGACCGTCGGT.2711.001.00-----------------------------1.00--------------------------
...........................................................................................................................................................................................................GTGGTGGAGGAAGGTGGTTATGAAG......................2511.001.00-----------------1.00--------------------------------------
.................................................................................................................................TTCTACAGGCCTACTAT........................................................................................................171.000.00-----------------------------------------1.00--------------
..........................................................................................................................................................................................................TGTGGTGGAGGAAGGTGGTTA...........................2111.001.00-------------------------------------1.00------------------
................................................................................................................................TTTCTACAGGCCTACCCAC.......................................................................................................1921.001.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACCCCG.......................................................................................................1921.001.00----1.00---------------------------------------------------
.................................................................................................................................................................................................................GAGGAAGGTGGTTATGAAGC.....................2011.001.00------------------------1.00-------------------------------
................................................................................................................................TTTCTACAGGCCTACAA.........................................................................................................1721.001.00----1.00---------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTAGG.......................................................................................................191.000.00--1.00-----------------------------------------------------
............................................................................................................................................................................................................TGGTGGAGGAAGGTGGTTA...........................1911.001.00----------------1.00---------------------------------------
................................................................................................................................TTTCTACAGGCCTACTGATC......................................................................................................201.000.00------1.00-------------------------------------------------
........................................................................................................................................................................................................ATTGTGGTGGAGGAAGGTGGTTATG.........................2511.001.00------------------------------------------------------1.00-
...........................................................................................................................................................................................................GTGGTGGAGGAAGGTGGTTATGACG......................251.000.00-----------------1.00--------------------------------------
................................................................................................................................TTTCTACAGGCCTACACTT.......................................................................................................1921.001.00-1.00------------------------------------------------------
...............................................................................................................................................................................................................................TGAAGCTATCTGCAAGGACCGTCGGT.2611.001.00------------------------------------------------1.00-------
...........................................................................................................................................................................................................GTGGTGGAGGAAGGTGGTTATGAAGCTA...................2811.001.00---------------------1.00----------------------------------
...........................................................................................................................................................................................................GTGGTGGAGGAAGGTGGTTATG.........................2211.001.00--------------------------------------------1.00-----------
............................................................................................TGAGGGACTAGAGTTTATA...........................................................................................................................................191.000.00-1.00------------------------------------------------------
....................................................................................................................................TACAGGCCTACTCCCTC.....................................................................................................1711.001.00--------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................TCTGCAAGGACCGTCGGTGGCC221.000.00--------------------------------------1.00-----------------
..................................................................................................................................TCTACAGGCCTACTCCC.......................................................................................................1711.001.00---------------1.00----------------------------------------
..........................................................................................................................................................................................................TGTGGTGGAGGAAGGTGGTTATGAGGCT....................281.000.00--------------------------------1.00-----------------------
..................................................................................................................................................................................................................................AGCTATCTGCAAGGACCG......1811.001.00-----------------------------------------------------1.00--
..........................................................................................................................................................................................................TGTGGTGGAGGAAGGTGGTTATGAA.......................2511.001.00----------------------------------------1.00---------------
................................................................................................................................TTTCTACAGGCCTACTGCTC......................................................................................................201.000.001.00-------------------------------------------------------
......................................................................................................................................................................................................................................ATCTGCAAGGACCGTCGGTT201.000.00---------------------------------------1.00----------------
................................................................................................................................TTTCTACAGGCCTACGTGC.......................................................................................................1921.001.00-1.00------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACCGAT.......................................................................................................1921.001.00-1.00------------------------------------------------------
........................................................................................................................................................................................................................................CTGCAAGGACCGTCGGTG1811.001.00--------------------------1.00-----------------------------
................................................................................................................................TTTCTACAGGCCTACTAGC.......................................................................................................191.000.001.00-------------------------------------------------------
................................................................................................................................TTTCTACAGGCCTACTATCT......................................................................................................201.000.00-1.00------------------------------------------------------
.............................................................................................................CCTCATTGCCCTTTTAAC...........................................................................................................................181.000.00-------------------------------------------------------1.00
.................................................................................................................................................................................................................GAGGAAGGTGGTTATGA........................1720.500.50------------------0.50-------------------------------------

Antisense strand
CACAGCTTGGTAGCACACAAGCTGTCATCAGAACATCTTGGAATCTTTTGCTGCAATTTGAGGTTGGGATAAGGGGATAGCCCCCAGTGAAGTGAGGGACTAGAGTTGCCCTCATTGCCCTTTTGCCCTTTCTACAGGCCTACTCCCTCACATATAAATACACGTGGCACATCCATGTCTTTTCCTACTTGTTTTTTCAGATTGTGGTGGAGGAAGGTGGTTATGAAGCTATCTGCAAGGACCGTCGGTG
..........................................................(((((..(((....((((.....)))).....((((((((((....))..)))))))).)))....(((.........)))......)))))....................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189782SRR189783SRR189787SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................CCTCACATATAAATATGCC...................................................................................... 191.000.00-------------1.00------------------------------------------
.....................................................................................................................................ACAGGCCTACTCCCTCAGGTT................................................................................................ 211.000.00---------------1.00----------------------------------------
.....................................................................................................................CCCTTTTGCCCTTTCGCT................................................................................................................... 181.000.00-----------------------------------1.00--------------------
.......................................................................................................................................TGAGGGAGTAGGCCT.................................................................................................... 1540.250.25---0.25----------------------------------------------------