ID: uc011mod.1_intron_0_0_chrX_53222019_r.3p
GENE: (23)
chrX:53221969-53222218-


(2)
B-CELL 		(3)
BRAIN 		(3)
BREAST 		(11)
CELL-LINE 		(5)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(1)
OVARY 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCCTTTCTCCACTCTGACTCCCCGGCTGCATCTGCCCTGCCCACAGCAGCCGCCTCAGCAACAGTTGTGACAGTGGCTGAGCCTAGCACAGACCCTGACAGAGACCCCCCTCGGCCTCAAGGATCCTCTTTCTGACCATCAAGCCTGCTTCTTGGGGGGTGGGCGGGTAGGGGGGTGGCCATCCCTGCTACCCGCCCACCCCTGAGTCCCTTGACTTTTGTATTCTGACTCCAAGGTATTGTTCAGACCT
........................................................................................................................((((((.((..((.(((.....(((..((((....))))..))).))).))..)).))..))))..................................................................
.....................................................................................................................118.................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
..........................................................................................................................ATCCTCTTTCTGACCATCAAG...........................................................................................................2118.008.00--2.004.00-------------1.00-------------1.00--------------------------
..............................................................................................................................................................................................................TCCCTTGACTTTTGTATTCTG.......................2113.003.00--2.001.00------------------------------------------------------
..................................................................................................................................................................GCGGGTAGGGGGGTGGGGCG....................................................................202.000.00--------------------------------------1.001.00------------------
.....................................................................................................................................................................................................................ACTTTTGTATTCTGACTCCAAG...............2212.002.00-----------2.00----------------------------------------------
.......................................................................................................................................................................................................................TTTTGTATTCTGACTCCAAGGT.............2212.002.00-------2.00--------------------------------------------------
.................................................................................................................................TTCTGACCATCAAGCCTGCT.....................................................................................................2012.002.00---------------1.00---------------------------------1.00--------
.............................................................................TGAGCCTAGCACAGACCCTGACAGAGACCCC..............................................................................................................................................3112.002.00------------2.00---------------------------------------------
......................................................................................................................AAGGATCCTCTTTCTGACCATCAAGCCTGCCTC...................................................................................................332.000.002.00---------------------------------------------------------
......................................................TCAGCAACAGTTGTGACAGTGGCTGAGCCTAGCA..................................................................................................................................................................3412.002.00---------2.00------------------------------------------------
..........................................................................................GACCCTGACAGAGACCCCCCTC..........................................................................................................................................2212.002.00------2.00---------------------------------------------------
.......................GGCTGCATCTGCCCTTTTT................................................................................................................................................................................................................191.000.00-----------------------------------1.00----------------------
..................................................................GTGACAGTGGCTGAGTTCT.....................................................................................................................................................................191.000.00---------------------------1.00------------------------------
.....................................................................................................AGACCCCCCTCGGCCTCAAGGATCCTCC.........................................................................................................................281.000.001.00---------------------------------------------------------
.....................................................................ACAGTGGCTGAGCCTAGCA..................................................................................................................................................................1911.001.00-------------1.00--------------------------------------------
......CTCCACTCTGACTCCCCGGCTGC.............................................................................................................................................................................................................................2311.001.001.00---------------------------------------------------------
.......................................................................................ACAGACCCTGACAGAGACCCCCC............................................................................................................................................2311.001.00---------------------------------------------1.00------------
.............................................................................................................................................................................................................................ATTCTGACTCCAAGGTATTGTTCA.....2411.001.00--------------1.00-------------------------------------------
..................................................................................................................................TCTGACCATCAAGCCTG.......................................................................................................1711.001.00----------------------------1.00-----------------------------
..............................................................................................................................................................................................................................TTCTGACTCCAAGGTATT..........1811.001.00-------------------1.00--------------------------------------
.....................................................................................................AGACCCCCCTCGGCCTCAAGGATCCTCTC........................................................................................................................291.000.001.00---------------------------------------------------------
................ACTCCCCGGCTGCATCTGCCCTGCCCAC..............................................................................................................................................................................................................2811.001.00-1.00--------------------------------------------------------
..CTTTCTCCACTCTGACTCCCCGGC................................................................................................................................................................................................................................2411.001.00--------------------------1.00-------------------------------
....................................................................................................................................................TTCTTGGGGGGTGGGGAGG...................................................................................191.000.00--1.00-------------------------------------------------------
................ACTCCCCGGCTGCATCTGCCCGCCC.................................................................................................................................................................................................................251.000.00-1.00--------------------------------------------------------
...............................................................GTTGTGACAGTGGCTGAGCCTAGC...................................................................................................................................................................2411.001.00--------------1.00-------------------------------------------
...............................................................GTTGTGACAGTGGCTGAGCC.......................................................................................................................................................................2011.001.00-----------------------1.00----------------------------------
....TTCTCCACTCTGACTCCCCGGCT...............................................................................................................................................................................................................................2311.001.00-----------------------------1.00----------------------------
.......................................................................AGTGGCTGAGCCTAGCACAGACCCTGACAGA....................................................................................................................................................3111.001.00-1.00--------------------------------------------------------
....................................................................................AGCACAGACCCTGACAGAGACCCCC.............................................................................................................................................2511.001.00----------1.00-----------------------------------------------
....TTCTCCACTCTGACTCCCCG..................................................................................................................................................................................................................................2011.001.00---------------1.00------------------------------------------
.......................................................................................ACAGACCCTGACAGAGACCCCCCTCGGCC......................................................................................................................................2911.001.00----1.00-----------------------------------------------------
.......................................................................................................................AGGATCCTCTTTCTGACCATCAAGCCCGC......................................................................................................291.000.001.00---------------------------------------------------------
.............................................................CAGTTGTGACAGTGGCTGAGCCTAGC...................................................................................................................................................................2611.001.00------------------1.00---------------------------------------
......................................................................................CACAGACCCTGACAGAGACCCCCCTCGGCT......................................................................................................................................301.000.00--------------------------------1.00-------------------------
....................................................................................................................................................................................................................GACTTTTGTATTCTGACTCC..................2011.001.00----1.00-----------------------------------------------------
..........................................ACAGCAGCCGCCTCAGCCACT...........................................................................................................................................................................................211.000.00-------------------------1.00--------------------------------
...............................................................................................................................................................................................................................TCTGACTCCAAGGTATTGTTCAG....2311.001.00------------------------------------1.00---------------------
............................................................ACAGTTGTGACAGTGGCTGAGCCTAGCA..................................................................................................................................................................2811.001.00-----1.00----------------------------------------------------
.......................................................................................ACAGACCCTGACAGAGACCCCCCTCGGCCCC....................................................................................................................................3111.001.00-1.00--------------------------------------------------------
.....TCTCCACTCTGACTCCCCGGCTGCACC..........................................................................................................................................................................................................................271.000.001.00---------------------------------------------------------
.................................................................................................ACAGAGACCCCCCTCGGCCTCAAGGATCCTCC.........................................................................................................................321.000.001.00---------------------------------------------------------
................................................................................................................GGCCTCAAGGATCCTCTTTCTGACC.................................................................................................................2511.001.00-----1.00----------------------------------------------------
..................................................................................................................................................................GCGGGTAGGGGGGTGGGCTG....................................................................201.000.00---------------------------------1.00------------------------
..................................................CGCCTCAGCAACAGTTGTGACAG.................................................................................................................................................................................2311.001.00-----------------------------------------1.00----------------
...............................................................GTTGTGACAGTGGCTGAGC........................................................................................................................................................................1911.001.00-----1.00----------------------------------------------------
.................................................................................................ACAGAGACCCCCCTCGGCCTCAAGGACCTC...........................................................................................................................301.000.00-1.00--------------------------------------------------------
.......................................................................................................ACCCCCCTCGGCCTCAAGGATCCTCC.........................................................................................................................261.000.00-1.00--------------------------------------------------------
.........................................................GCAACAGTTGTGACAGTGGCTGAG.........................................................................................................................................................................2411.001.00----------------------------------1.00-----------------------
.........................................................................................................................................................................................................................TTGTATTCTGACTCCAAG...............1811.001.00----------------1.00-----------------------------------------
....TTCTCCACTCTGACTCCCCGGCTGCAC...........................................................................................................................................................................................................................2711.001.001.00---------------------------------------------------------
................................................................................................................................................................................................................CCTTGACTTTTGTATTCTGA......................2011.001.00------------------------------1.00---------------------------
....TTCTCCACTCTGACTCCCCGGCTGCA............................................................................................................................................................................................................................2611.001.00----1.00-----------------------------------------------------
.............................................................................TGAGCCTAGCACAGACCC...........................................................................................................................................................1811.001.00--------------------------------------------------1.00-------
......................................................................................................................AAGGATCCTCTTTCTGACCATCAAGC..........................................................................................................2611.001.00------------------------------------------------1.00---------
...................................................................................TAGCACAGACCCTGACAGAGACCCC..............................................................................................................................................2511.001.00----------1.00-----------------------------------------------
.......................................................................................ACAGACCCTGACAGAGACCCCCCTC..........................................................................................................................................2511.001.00----------------------------------------------1.00-----------
.......................................................CAGCAACAGTTGTGACAG.................................................................................................................................................................................1811.001.00----------------------1.00-----------------------------------
.....................................................................................................AGACCCCCCTCGGCCTCAAGGATCCCC..........................................................................................................................271.000.001.00---------------------------------------------------------
..............................................................................................................................TCTTTCTGACCATCAAGCCTGCTTC...................................................................................................2511.001.00----1.00-----------------------------------------------------
...............................................................................................................................................................TGGGCGGGTAGGGGGGTGCTCG.....................................................................221.000.00-1.00--------------------------------------------------------
....................................................................................................................................................TTCTTGGGGGGTGGGCGGGT..................................................................................2011.001.00----------------1.00-----------------------------------------
...............................................................................................................................CTTTCTGACCATCAAGCCTGCT.....................................................................................................2211.001.00--------------------------------------------1.00-------------
...............................................................................................................................................................TGGGCGGGTAGGGGGGTGGAA......................................................................211.000.00------------------------1.00---------------------------------
....................................................................................................................................................................................ATCCCTGCTACCCGCCCACCCCT...............................................2311.001.00-------------------------------------1.00--------------------
................................................................................................................................................................................................................CCTTGACTTTTGTATTCTGACTCCAAGG..............2811.001.00------------------------------------------1.00---------------
...............................................................................................................................CTTTCTGACCATCAAGCCTGCTCCTT.................................................................................................2611.001.00--------------------1.00-------------------------------------
.................................................................................................................................................................GGCGGGTAGGGGGGTGGGGG.....................................................................201.000.001.00---------------------------------------------------------
...........................................................................GCTGAGCCTAGCACAGAC.............................................................................................................................................................1811.001.00---------------------1.00------------------------------------
..............TGACTCCCCGGCTGCATCTGCCCTGCCCACAG............................................................................................................................................................................................................3211.001.001.00---------------------------------------------------------
...............................................................................................................................................................TGGGCGGGTAGGGGGGGTGG.......................................................................201.000.00-----------------1.00----------------------------------------
..............................................................................................................................TCTTTCTGACCATCAAGCCTGCTTCC..................................................................................................2611.001.001.00---------------------------------------------------------
..................TCCCCGGCTGCATCTGCC......................................................................................................................................................................................................................1811.001.00-------------1.00--------------------------------------------
.........................................................................TGGCTGAGCCTAGCACAGACCCCGAC.......................................................................................................................................................261.000.001.00---------------------------------------------------------
..........ACTCTGACTCCCCGGCTGCATCTGCCCCG...................................................................................................................................................................................................................291.000.00-1.00--------------------------------------------------------
..............................................................................................................................................................................................................................TTCTGACTCCAAGGTATTGTTCAGACC.2711.001.00-------------------------------------------1.00--------------
.......................................................................................................................AGGATCCTCTTTCTGAC..................................................................................................................1720.500.50---------------------------------------------------0.50------
.................................................................................CCTAGCACAGACCCTGA........................................................................................................................................................1720.500.50----------------------------------------------------0.50-----
..........................................................CAACAGTTGTGACAGT................................................................................................................................................................................1630.330.33-----0.33----------------------------------------------------
..............................................................................................CTGACAGAGACCCCCC............................................................................................................................................1630.330.33-----------------------------------------------------0.33----
...................................................................................................................................................................CGGGTAGGGGGGTGG........................................................................1570.140.14---------------------------------------------------------0.14

Antisense strand
CCCTTTCTCCACTCTGACTCCCCGGCTGCATCTGCCCTGCCCACAGCAGCCGCCTCAGCAACAGTTGTGACAGTGGCTGAGCCTAGCACAGACCCTGACAGAGACCCCCCTCGGCCTCAAGGATCCTCTTTCTGACCATCAAGCCTGCTTCTTGGGGGGTGGGCGGGTAGGGGGGTGGCCATCCCTGCTACCCGCCCACCCCTGAGTCCCTTGACTTTTGTATTCTGACTCCAAGGTATTGTTCAGACCT
........................................................................................................................((((((.((..((.(((.....(((..((((....))))..))).))).))..)).))..))))..................................................................
.....................................................................................................................118.................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
..............................................................................................................................................................................................................................TTCTGACTCCAAGGTGGC.......... 182.000.00--------2.00-------------------------------------------------
..............................................................................................................................................................................................................................TTCTGACTCCAAGGTGGAA......... 191.000.00-----------------------------------------------1.00----------
..................................................................................................................................................................................................CCCACCCCTGAGTCCCTGACT................................... 211.000.00----------------------------------------1.00-----------------
..............................................................................................................................................CCCCCAAGAAGCAGGC............................................................................................ 1640.500.50------------------0.25------------------------------------0.25--
................................................................................................................................................................ACCCCCCTACCCGCCC.......................................................................... 1630.330.33------------------------------------------------------0.33---
.................................................................................................................................................................................GGTAGCAGGGATGGC.......................................................... 1580.250.25--------------------------------------------------------0.25-