ID: uc011mmv.1_intron_2_0_chrX_49034529_r
GENE: PRICKLE3(6)
chrX:49034479-49034670-


(2)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
UTERUS

Sense strand
GGCGTCACCATGCCGAATGCCTGCGTCCACGCTGCCAAGCCTGTGACGAGGTTTGGGCCTCCCTGCCCAGGGGTGGGAGTTGAGGGTGGGCAGGGCCAGGAGCAGGCTCATCTGACAGCCACAGATGGCCTGCGCCCTCCAGATCATCTTCTCCCCTGAGTGCACGGAGGCTGAGGGCCGCCACTGGCACAT
.............................................................((..((....))..)).((((.((((((((...((.....))..))))))))..)))).........................................................................
...........................................................60.............................................................123...................................................................
SizePerfect hitTotal NormPerfect NormSRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038863(GSM458546)
MM603. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038857(GSM458540)
D20. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)
.................................................................................................AGGAGCAGGCTCATCTGACAGC.........................................................................22110.0010.002.00-1.002.00-1.00---1.00-----1.00----------1.00-----1.00----------------
................................................................................................CAGGAGCAGGCTCATCTGACAGCC........................................................................2417.007.00-------------1.00----1.00--1.00-----1.00-1.00------1.00----1.00-------
.................................................................................................AGGAGCAGGCTCATCTGACAGCC........................................................................2316.006.001.001.00---1.00-----2.00--------------------------1.00----------
.................................................................................................AGGAGCAGGCTCATCTGACAGCCA.......................................................................2416.006.002.00---------2.00---------1.00------------------------1.00---
...............................................................................................CCAGGAGCAGGCTCATCTGACAGCC........................................................................2513.003.00--------------1.00----------------1.00-1.00---------------
................................................................................................CAGGAGCAGGCTCATCTGACAGC.........................................................................2313.003.00-1.00----1.00---------------------------------------1.00--
.................................................................................................AGGAGCAGGCTCATCTGACAGCA........................................................................2312.0010.00-2.00-----------------------------------------------
.................................................................................................AGGAGCAGGCTCATCTGACAGA.........................................................................2212.001.00----2.00--------------------------------------------
................................................................................................CAGGAGCAGGCTCATCTGACAG..........................................................................2212.002.00-----------------------------------1.00---1.00---------
...............................................................................................CCAGGAGCAGGCTCATCTGACA...........................................................................2212.002.00--------2.00----------------------------------------
................................................................................................CAGGAGCAGGCTCATCTGACAA..........................................................................221.000.00----------------------------------1.00--------------
.................................................................................................AGGAGCAGGCTCATCTGACAGCCACAGA...................................................................2811.001.00---1.00---------------------------------------------
................................................................................................CAGGAGCAGGCTCATCTGACATC.........................................................................231.000.00------1.00------------------------------------------
..............GAATGCCTGCGTCCACGCT...............................................................................................................................................................1911.001.00----------------------------1.00--------------------
.................................................................................................AGGAGCAGGCTCATCTGACAGCCACAG....................................................................2711.001.00---------1.00---------------------------------------
.........................................................................TGGGAGTTGAGGGTGATTT....................................................................................................191.000.00------------------------1.00------------------------
................................................................................................CAGGAGCAGGCTCATCTGACAGA.........................................................................2311.002.00--1.00----------------------------------------------
...............................................................................................CCAGGAGCAGGCTCATCTG..............................................................................1911.001.00------------------------------------------1.00------
...................................CAAGCCTGTGACGAGA.............................................................................................................................................161.000.00--1.00----------------------------------------------
...............................................................................................CCAGGAGCAGGCTCATCTGA.............................................................................2011.001.00-------------------------1.00-----------------------
.................................................................................................AGGAGCAGGCTCATCTGACAG..........................................................................2111.001.00----------------------------------------1.00--------
................................TGCCAAGCCTGTGACGAG..............................................................................................................................................1811.001.00-----------------------------------------------1.00-
................................................................................................CAGGAGCAGGCTCATCTGACAGCCAT......................................................................261.000.00-----------------1.00-------------------------------
.......................................................................................................................................................................AGGCTGAGGGCCGCCACTGGCACACGG271.000.00-------1.00-----------------------------------------
................................................................................................CAGGAGCAGGCTCATCTGCCAG..........................................................................221.000.00------------1.00------------------------------------
.................................................................................................AGGAGCAGGCTCATCTGACA...........................................................................2011.001.00-----------------------1.00-------------------------
................................................................................................CAGGAGCAGGCTCATCTGCG............................................................................201.000.00-------------------------------------------1.00-----
................................................................GCCCAGGGGTGGGAGTGGCA............................................................................................................201.000.00-------------------------------------1.00-----------
...............................................................................................CCAGGAGCAGGCTCATCTGACAGC.........................................................................2411.001.00------------1.00------------------------------------
....................................................................................................................................................................CGGAGGCTGAGGGCCG............1611.001.00------------------------------1.00------------------
................................................................................................................................................................TGCACGGAGGCTGAGAGC..............181.000.00--------------------------------------------1.00----
............................................................................................GGGCCAGGAGCAGGCTCATCTGACA...........................................................................2511.001.00----------------------1.00--------------------------
.................................................................................................AGGAGCAGGCTCATCTGA.............................................................................1820.500.50------------------------------------------------0.50
.................................................................................................AGGAGCAGGCTCATCTGATT...........................................................................2020.500.50-------------0.50-----------------------------------

Antisense strand
GGCGTCACCATGCCGAATGCCTGCGTCCACGCTGCCAAGCCTGTGACGAGGTTTGGGCCTCCCTGCCCAGGGGTGGGAGTTGAGGGTGGGCAGGGCCAGGAGCAGGCTCATCTGACAGCCACAGATGGCCTGCGCCCTCCAGATCATCTTCTCCCCTGAGTGCACGGAGGCTGAGGGCCGCCACTGGCACAT
.............................................................((..((....))..)).((((.((((((((...((.....))..))))))))..)))).........................................................................
...........................................................60.............................................................123...................................................................
SizePerfect hitTotal NormPerfect NormSRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038863(GSM458546)
MM603. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038857(GSM458540)
D20. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)
.......................................................................................................................................CCTCCAGATCATCTTCTAT...................................... 191.000.00-------------------1.00-----------------------------
.....................................................TGGGCCTCCCTGCCCAGGG........................................................................................................................ 191.000.00-------1.00-----------------------------------------
....TCACCATGCCGAATGCCTGCGTCCACGCTGA............................................................................................................................................................. 311.000.00----------------1.00--------------------------------